VHA526
Library VH
(Link to library)
Clone ID VHA526
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13245-1|Contig-U15639-1
Original site URL
Representative seq. ID VHA526P
(Link to Original site)
Representative DNA sequence
>VHA526 (VHA526Q) /CSM/VH/VHA5-B/VHA526Q.Seq.d/
AATTTTTTTATTTATTTATACATTTTTATTATTTTAAATTTATAACATTTATCATATTAA
AAACTAAATTAAAATAAAAAAACAATTCTATTAATTATTTATTATTATAAATCCAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAATTTTTTTTTTTTTTNAAAAAAAAAAAAAAAAAAAA
AAAAAAAANGGGGNNNNNAAAAAXXXXXXXXXXCTCAGAGAGATGAAAGGTTAGTAGTAG
ACNNGCTGCATTCAATAAAATCATTANNGATACATTGATTCAACANGTTCGTGTTGTTTT
CAATGGTGATGGTTATAGTGGTGATTGGAAAGAACTCGCCAAATNTAGAGGNTTAGCAAA
TTTACCATCGACTCCAGAGGCTTTAACAAATATTAACTCTGAAAAGAATATTAAACTCTT
TTCTGAAAGTAATATTCTCTCACCAGTNGAATTGGAATCACGTCAAGAGATTCTCTTTGA
AATTTATAATAAATCAATTAAAATCGAAGCAAACTCTTTATATGATTTAGTTTCAACTTT
GGTACTTCCAGCTTGTTTTGCTCATCAAAAGAATATTGCTGAATCTGTAAACTCTATAAT
GCCATTCATTCAAAGTCAAAAATCTTTCAGTCAACCAAATCATCAATATTCTCATCTCTC
TGAAGTCGTTGAATCTGTC
sequence update 2002.10.25
Translated Amino Acid sequence
nffiylyifiilnl*hlsy*kln*NKKTILLIIYYYKSKKKKKKKKKKIFFFFXKKKKKK
KKXGXXK---

---QRDERLVVDXLHSIKSLXIH*fnxfvlfsmvmvivvigknspnxex*qiyhrlqrl*
qiltlkrilnsflkvifshqxnwnhvkrfslkfiinqlkskqtlymi*fqlwyfqlvlli
krillnl*tl*chsfkvknlsvnqiinilislkslnl


Translated Amino Acid sequence (All Frames)
Frame A:
nffiylyifiilnl*hlsy*kln*NKKTILLIIYYYKSKKKKKKKKKKIFFFFXKKKKKK
KKXGXXK---

---lremkg***txciq*nhxxyidstxsccfqw*wl*w*lertrqx*rxskftidsrgf
nky*l*key*tlf*k*ysltsxigitsrdsl*nl**in*nrsklfi*fsfnfgtsslfcs
skeyc*icklynaihskskifqstkssifssl*sr*ic

Frame B:
iflfiytfllf*iyniyhikn*ikikkqfy*lfiiinpkkkkkkkkkkffffxkkkkkkk
kkxgxxk---

---ser*kvssrxaafnkiixdtliqxvrvvfngdgysgdwkelakxrglanlpstpeal
tninsekniklfsesnilspvelesrqeilfeiynksikieanslydlvstlvlpacfah
qkniaesvnsimpfiqsqksfsqpnhqyshlsevvesv

Frame C:
ffylfihfyyfkfitfiilktklk*knnsinylll*iqkkkkkkkkknffffxkkkkkkk
kkxgxxk---

---QRDERLVVDXLHSIKSLXIH*fnxfvlfsmvmvivvigknspnxex*qiyhrlqrl*
qiltlkrilnsflkvifshqxnwnhvkrfslkfiinqlkskqtlymi*fqlwyfqlvlli
krillnl*tl*chsfkvknlsvnqiinilislkslnl

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHA526 (VHA526Q) /CSM/VH/VHA5-B/VHA526Q.Seq.d/ 876 0.0
SHK163 (SHK163Q) /CSM/SH/SHK1-C/SHK163Q.Seq.d/ 854 0.0
VHP667 (VHP667Q) /CSM/VH/VHP6-C/VHP667Q.Seq.d/ 852 0.0
VHN461 (VHN461Q) /CSM/VH/VHN4-C/VHN461Q.Seq.d/ 852 0.0
VHM420 (VHM420Q) /CSM/VH/VHM4-A/VHM420Q.Seq.d/ 852 0.0
VHH608 (VHH608Q) /CSM/VH/VHH6-A/VHH608Q.Seq.d/ 852 0.0
VHB523 (VHB523Q) /CSM/VH/VHB5-A/VHB523Q.Seq.d/ 852 0.0
SHJ542 (SHJ542Q) /CSM/SH/SHJ5-B/SHJ542Q.Seq.d/ 852 0.0
SHA796 (SHA796Q) /CSM/SH/SHA7-D/SHA796Q.Seq.d/ 852 0.0
SHA735 (SHA735Q) /CSM/SH/SHA7-B/SHA735Q.Seq.d/ 852 0.0

own update 2004.12.24
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 38 0.047 2
AC172925|AC172925.2 Bos taurus clone CH240-308P13, WORKING DRAFT SEQUENCE, 10 unordered pieces. 48 0.32 1
EK249703|EK249703.1 1095460272432 Global-Ocean-Sampling_GS-31-01-01-1P3-1P8KB marine metagenome genomic clone 1061005673847 3', genomic survey sequence. 48 0.32 1
EK217716|EK217716.1 1095460124509 Global-Ocean-Sampling_GS-31-01-01-1P3-1P8KB marine metagenome genomic clone 1061005673847 5', genomic survey sequence. 48 0.32 1
EK215529|EK215529.1 1095460117317 Global-Ocean-Sampling_GS-31-01-01-1P3-1P8KB marine metagenome genomic clone 1061005693089 5', genomic survey sequence. 48 0.32 1
EK085045|EK085045.1 1092961138295 Global-Ocean-Sampling_GS-31-01-01-1P3-1P8KB marine metagenome genomic clone 1061001944114 5', genomic survey sequence. 48 0.32 1
CT333556|CT333556.1 Sus scrofa genomic clone CH242-389K11, genomic survey sequence. 46 1.3 1
AC149663|AC149663.3 Bos taurus clone CH240-65H8, *** SEQUENCING IN PROGRESS ***, 30 unordered pieces. 32 2.4 2
AC007178|AC007178.6 Arabidopsis thaliana chromosome 2 clone F3L12 map mi320, complete sequence. 44 2.7 3
AC069189|AC069189.1 Homo sapiens chromosome 3 clone RP11-579A2 map 3, LOW-PASS SEQUENCE SAMPLING. 42 2.8 3
dna update 2007. 3.19
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54WR9) RecName: Full=Type-3 glutamine synthetase; EC=... 284 2e-75
CP000885_3336(CP000885|pid:none) Clostridium phytofermentans ISD... 94 3e-18
CP001114_1380(CP001114|pid:none) Deinococcus deserti VCD115, com... 94 5e-18
CP001348_555(CP001348|pid:none) Clostridium cellulolyticum H10, ... 94 5e-18
CP000359_1193(CP000359|pid:none) Deinococcus geothermalis DSM 11... 92 1e-17
CP001124_3048(CP001124|pid:none) Geobacter bemidjiensis Bem, com... 91 2e-17
CP000568_195(CP000568|pid:none) Clostridium thermocellum ATCC 27... 89 9e-17
CP001107_677(CP001107|pid:none) Eubacterium rectale ATCC 33656, ... 89 2e-16
CT573071_568(CT573071|pid:none) Kuenenia stuttgartiensis genome ... 88 3e-16
AE017285_1252(AE017285|pid:none) Desulfovibrio vulgaris subsp. v... 87 5e-16
protein update 2009. 6.26
PSORT

psg: 0.91 gvh: 0.46 alm: 0.56 top: 1.07 tms: 0.00 mit: 0.32 mip: 0.00
nuc: 1.47 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

76.0 %: nuclear
8.0 %: mitochondrial
8.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: plasma membrane

>> prediction for VHA526 is nuc

5' end seq. ID VHA526F
5' end seq.
>VHA526F.Seq
AATTTTTTTATTTATTTATACATTTTTATTATTTTAAATTTATAACATTTATCATATTAA
AAACTAAATTAAAATAAAAAAACAATTCTATTAATTATTTATTATTATAAATCCAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAATTTTTTTTTTTTTTNAAAAAAAAAAAAAAAAAAAA
AAAAAAAANGGGGNNNNNAAAAANNNNNNNNNN
Length of 5' end seq. 213
3' end seq. ID VHA526Z
3' end seq.
>VHA526Z.Seq
NNNNNNNNNNCTCAGAGAGATGAAAGGTTAGTAGTAGACNNGCTGCATTCAATAAAATCA
TTANNGATACATTGATTCAACANGTTCGTGTTGTTTTCAATGGTGATGGTTATAGTGGTG
ATTGGAAAGAACTCGCCAAATNTAGAGGNTTAGCAAATTTACCATCGACTCCAGAGGCTT
TAACAAATATTAACTCTGAAAAGAATATTAAACTCTTTTCTGAAAGTAATATTCTCTCAC
CAGTNGAATTGGAATCACGTCAAGAGATTCTCTTTGAAATTTATAATAAATCAATTAAAA
TCGAAGCAAACTCTTTATATGATTTAGTTTCAACTTTGGTACTTCCAGCTTGTTTTGCTC
ATCAAAAGAATATTGCTGAATCTGTAAACTCTATAATGCCATTCATTCAAAGTCAAAAAT
CTTTCAGTCAACCAAATCATCAATATTCTCATCTCTCTGAAGTCGTTGAATCTGTC
Length of 3' end seq. 476
Connected seq. ID VHA526P
Connected seq.
>VHA526P.Seq
AATTTTTTTATTTATTTATACATTTTTATTATTTTAAATTTATAACATTTATCATATTAA
AAACTAAATTAAAATAAAAAAACAATTCTATTAATTATTTATTATTATAAATCCAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAATTTTTTTTTTTTTTNAAAAAAAAAAAAAAAAAAAA
AAAAAAAANGGGGNNNNNAAAAA----------CTCAGAGAGATGAAAGGTTAGTAGTAG
ACNNGCTGCATTCAATAAAATCATTANNGATACATTGATTCAACANGTTCGTGTTGTTTT
CAATGGTGATGGTTATAGTGGTGATTGGAAAGAACTCGCCAAATNTAGAGGNTTAGCAAA
TTTACCATCGACTCCAGAGGCTTTAACAAATATTAACTCTGAAAAGAATATTAAACTCTT
TTCTGAAAGTAATATTCTCTCACCAGTNGAATTGGAATCACGTCAAGAGATTCTCTTTGA
AATTTATAATAAATCAATTAAAATCGAAGCAAACTCTTTATATGATTTAGTTTCAACTTT
GGTACTTCCAGCTTGTTTTGCTCATCAAAAGAATATTGCTGAATCTGTAAACTCTATAAT
GCCATTCATTCAAAGTCAAAAATCTTTCAGTCAACCAAATCATCAATATTCTCATCTCTC
TGAAGTCGTTGAATCTGTC
Length of connected seq. 669
Full length Seq ID -
Full length Seq. -
Length of full length seq. -