VHA506
Library VH
(Link to library)
Clone ID VHA506
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14719-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>VHA506 (VHA506Q) /CSM/VH/VHA5-A/VHA506Q.Seq.d/
AGGTTATAACTCTTGGAGACAGTAATGTTGGTAAAACATCTCTCTTTTATAATTATATGT
ATGGGAAATTTATATATCATAGGTCATGCTCAATTGATTTTTGTTCAAAGGAACTAATGA
TTGAAAATCAGCATGTGTCTATGATGGTAAGTGGTAAAAAAAAAAAAAATCGTAAANGGG
AGGTCCCCCAANCAATTAATTTNTANAAAAAAAAXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence
VITLGDSNVGKTSLFYNYMYGKFIYHRSCSIDFCSKELMIENQHVSMMVSGKKKKNRKXE
VPQXINXXKK---


Translated Amino Acid sequence (All Frames)
Frame A:
rl*lletvmlvkhlsfiiicmgnlyiighaqlifvqrn**lkismcl*w*vvkkkkivxg
rspxqlixxkk---


Frame B:
gynswrq*cw*nisll*lyvweiyis*vmln*flfkgtnd*ksacvydgkw*kkkks*xg
gppxn*fxxk---


Frame C:
VITLGDSNVGKTSLFYNYMYGKFIYHRSCSIDFCSKELMIENQHVSMMVSGKKKKNRKXE
VPQXINXXKK---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHA506 (VHA506Q) /CSM/VH/VHA5-A/VHA506Q.Seq.d/ 307 4e-83
SSF442 (SSF442Q) /CSM/SS/SSF4-B/SSF442Q.Seq.d/ 155 3e-37
SSJ862 (SSJ862Q) /CSM/SS/SSJ8-C/SSJ862Q.Seq.d/ 46 2e-04
SSJ429 (SSJ429Q) /CSM/SS/SSJ4-B/SSJ429Q.Seq.d/ 46 2e-04
CHR645 (CHR645Q) /CSM/CH/CHR6-B/CHR645Q.Seq.d/ 46 2e-04
SSJ532 (SSJ532Q) /CSM/SS/SSJ5-B/SSJ532Q.Seq.d/ 38 0.053
SSG433 (SSG433Q) /CSM/SS/SSG4-B/SSG433Q.Seq.d/ 38 0.053
SSF622 (SSF622Q) /CSM/SS/SSF6-A/SSF622Q.Seq.d/ 38 0.053
SSE736 (SSE736Q) /CSM/SS/SSE7-B/SSE736Q.Seq.d/ 38 0.053
SSC718 (SSC718Q) /CSM/SS/SSC7-A/SSC718Q.Seq.d/ 38 0.053

own update 2002.12.20
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AF081681|AF081681.1 Dictyostelium discoideum GTP binding protein RARE7L gene, complete cds. 98 1e-16 1
EJ291224|EJ291224.1 1095383002841 Global-Ocean-Sampling_GS-27-01-01-1P8-2P0KB marine metagenome genomic clone 1061005539944 3', genomic survey sequence. 34 0.27 2
AM187598|AM187598.1 Paracentrotus lividus EST, clone MPMGp1172O1618Q, 5' end. 46 0.39 1
AC156388|AC156388.6 Mus musculus 10 BAC RP24-254P7 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence. 32 0.80 2
AC166066|AC166066.6 Mus musculus 10 BAC RP24-285H2 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence. 32 0.80 2
AC153490|AC153490.1 Mus musculus BAC RP23-210M12 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence. 32 0.81 2
AX344577|AX344577.1 Sequence 2 from Patent WO0200927. 32 0.91 2
CR259153|CR259153.1 Forward strand read from insert in 5'HPRT insertion targeting and chromosome engineering clone MHPN413n15. 32 1.1 2
BU497602|BU497602.1 PfESToab81g05.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to SW:RAB7_CANFA P18067 RAS-RELATED PROTEIN RAB-7. [1] ;, mRNA sequence. 44 1.5 1
BQ596061|BQ596061.1 PfESToab28g07.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to SW:RAB7_CANFA P18067 RAS-RELATED PROTEIN RAB-7. [1] ;, mRNA sequence. 44 1.5 1
dna update 2007. 3.16
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AF081681_1(AF081681|pid:none) Dictyostelium discoideum GTP bindi... 63 4e-09
(Q54FK7) RecName: Full=Ras-related protein RabL; 63 4e-09
AC155898_18(AC155898|pid:none) Medicago truncatula clone mth2-10... 47 3e-04
C84606(C84606)probable RAS type GTP-binding protein [imported] -... 45 6e-04
AJ290938_1(AJ290938|pid:none) Plasmodium falciparum mRNA for put... 45 8e-04
BT036376_1(BT036376|pid:none) Zea mays full-length cDNA clone ZM... 45 8e-04
AK111495_1(AK111495|pid:none) Oryza sativa Japonica Group cDNA c... 45 8e-04
(Q54FK8) RecName: Full=Ras-related protein RabM; 45 8e-04
BC072717_1(BC072717|pid:none) Danio rerio zgc:91909, mRNA (cDNA ... 45 0.001
AM910989_4(AM910989|pid:none) Plasmodium knowlesi strain H chrom... 45 0.001
protein update 2009. 6.26
PSORT

psg: 0.81 gvh: 0.32 alm: 0.56 top: 0.53 tms: 0.00 mit: 0.21 mip: 0.06
nuc: 0.04 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: nuclear
32.0 %: cytoplasmic
16.0 %: cytoskeletal
8.0 %: mitochondrial

>> prediction for VHA506 is nuc

5' end seq. ID VHA506F
5' end seq.
>VHA506F.Seq
AGGTTATAACTCTTGGAGACAGTAATGTTGGTAAAACATCTCTCTTTTATAATTATATGT
ATGGGAAATTTATATATCATAGGTCATGCTCAATTGATTTTTGTTCAAAGGAACTAATGA
TTGAAAATCAGCATGTGTCTATGATGGTAAGTGGTAAAAAAAAAAAAAATCGTAAANGGG
AGGTCCCCCAANCAATTAATTTNTANAAAAAAAANNNNNNNNNN
Length of 5' end seq. 224
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -