>VHA442 (VHA442Q) /CSM/VH/VHA4-B/VHA442Q.Seq.d/
XXXXXXXXXXTTCAAAAGATTTCCTCTACACTCAAAGAAAAGGAAACAATCATTCAATCA
TATCAAGAGATTATGAGTCAATTAAAATATAATTTAAAGGATTCATCATTAATGGATAAA
AAAGATTCTGCCATTGTTCAACTACTTTATCAATTTTCGTCAATAACAAATAATTGTGTT
GGTAGTAGTAGTGGTGGTAGTAGCAGTAGTAATAATAGCGGCGCTGGAGGTAGTATTAAT
CCAACAGAGAATATATTGTTGGTAAAAGAAACCATTGTAAATAAGTCATTAGAGATTCAA
TTGGAGGAATTGAAAAAGGAAAATCAAAAATTAAAAGAAAATTCAACAAATAATCAAACA
AAATTATTAGAGTACGATTTAATTAAGCAAACCATTACCAATAGGATACAGATAGAAGCT
GTTTCAGTTGATAATCTTTTAGGAGATAAATTGGATTCACTCGAGATGAAAGACCTTGAC
AAGTTGGAAGAACTCTACCATAACGTTTTAAAGAAAGTTGGTTCCGCCAAACAAGATCTA
CTTCAAAAACAACTATTAAAAATGCAAAGAGAAAAAGAAGAAAGTGCTGCAAATGGCAAT
GGTAAAACTTGTGTTGTTTGTGTTGATCTTTTAATTAATACCGTATTAGTACCTTGTAGA
CATAGTTGTATATGTAGTACTTGCTCAAAGAAATTATCACTTTGTCCACTTTGCAGAACC
CCAATTAAAG

---QKISSTLKEKETIIQSYQEIMSQLKYNLKDSSLMDKKDSAIVQLLYQFSSITNNCVG
SSSGGSSSSNNSGAGGSINPTENILLVKETIVNKSLEIQLEELKKENQKLKENSTNNQTK
LLEYDLIKQTITNRIQIEAVSVDNLLGDKLDSLEMKDLDKLEELYHNVLKKVGSAKQDLL
QKQLLKMQREKEESAANGNGKTCVVCVDLLINTVLVPCRHSCICSTCSKKLSLCPLCRTP
IK

Frame A:
---skdflytqrkgnnhsiisrdyesiki*fkgfiing*krfchcsttlsifvnnk*lcw
***ww**q****rrwr*y*snreyivgkrnhck*virdsiggiekgkskikrkfnk*snk
iirvrfn*anhyq*dtdrscfs**sfrr*igftrderp*qvgrtlp*rfkeswfrqtrst
skttiknakrkrrkcckwqw*nlcclc*sfn*yristl*t*lym*yllkeiitlstlqnp
n*


Frame B:
---QKISSTLKEKETIIQSYQEIMSQLKYNLKDSSLMDKKDSAIVQLLYQFSSITNNCVG
SSSGGSSSSNNSGAGGSINPTENILLVKETIVNKSLEIQLEELKKENQKLKENSTNNQTK
LLEYDLIKQTITNRIQIEAVSVDNLLGDKLDSLEMKDLDKLEELYHNVLKKVGSAKQDLL
QKQLLKMQREKEESAANGNGKTCVVCVDLLINTVLVPCRHSCICSTCSKKLSLCPLCRTP
IK


Frame C:
---krfplhskkrkqsfnhikrl*vn*nii*rihh*wikkilplfnyfinfrq*qiivlv
vvvvvvavviiaalevvliqqriycw*kkpl*ish*rfnwrn*krkikn*kkiqqiikqn
y*sti*lskplpigyr*klfqliif*einwihsr*ktltswknstitf*rklvppnkiyf
knny*kckekkkkvlqmamvklvlfvlif*lipy*ylvdivvyvvlaqrnyhfvhfaepq
lk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHO509 (VHO509Q) /CSM/VH/VHO5-A/VHO509Q.Seq.d/                        597   e-169
VHL450 (VHL450Q) /CSM/VH/VHL4-C/VHL450Q.Seq.d/                        597   e-169
VHE376 (VHE376Q) /CSM/VH/VHE3-D/VHE376Q.Seq.d/                        597   e-169
VHC687 (VHC687Q) /CSM/VH/VHC6-D/VHC687Q.Seq.d/                        597   e-169
VHA442 (VHA442Q) /CSM/VH/VHA4-B/VHA442Q.Seq.d/                        597   e-169
CHR188 (CHR188Q) /CSM/CH/CHR1-D/CHR188Q.Seq.d/                        597   e-169
CHP347 (CHP347Q) /CSM/CH/CHP3-B/CHP347Q.Seq.d/                        597   e-169
CHI825 (CHI825Q) /CSM/CH/CHI8-B/CHI825Q.Seq.d/                        597   e-169
CHI217 (CHI217Q) /CSM/CH/CHI2-A/CHI217Q.Seq.d/                        597   e-169
AHJ445 (AHJ445Q) /CSM/AH/AHJ4-B/AHJ445Q.Seq.d/                        597   e-169

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AL592077|AL592077.8 Zebrafish DNA sequence from clone XX-DZ35C18.    52   8e-05  2
CT301886|CT301886.1 Sus scrofa genomic clone CH242-214G5, genomic survey sequence.    60   9e-05  1
AC113390|AC113390.3 Homo sapiens chromosome 5 clone RP11-360C3, complete sequence.    50   3e-04  2
AC181043|AC181043.1 Strongylocentrotus purpuratus clone R3-3050G1, WORKING DRAFT SEQUENCE, 14 unordered pieces.    42   3e-04  2
AC174116|AC174116.2 Strongylocentrotus purpuratus clone R3-46M20, WORKING DRAFT SEQUENCE, 10 unordered pieces.    42   3e-04  2
AC127460|AC127460.2 Homo sapiens chromosome 5 clone RP11-689B23, complete sequence.    50   3e-04  2
AC176703|AC176703.1 Strongylocentrotus purpuratus clone R3-3088N23, WORKING DRAFT SEQUENCE, 21 unordered pieces.    42   3e-04  2
CV792687|CV792687.1 c-030112-2w_E01.abd cDNA library of Tamarix androssowii Tamarix androssowii cDNA, mRNA sequence.    58   4e-04  1
CF199667|CF199667.1 EST1268 Tamarix androssowii leaf Tamarix androssowii cDNA, mRNA sequence.    58   4e-04  1
AC146990|AC146990.2 Lytechinus variegatus clone BLV-104N16, WORKING DRAFT SEQUENCE, 6 ordered pieces.    58   4e-04  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK228124_1(AK228124|pid:none) Arabidopsis thaliana mRNA for hypo...    59   2e-07
EF085152_1(EF085152|pid:none) Picea sitchensis clone WS0272_C07 ...    58   3e-07
BT061187_1(BT061187|pid:none) Zea mays full-length cDNA clone ZM...    57   8e-07
AK100160_1(AK100160|pid:none) Oryza sativa Japonica Group cDNA c...    57   8e-07
AB179092_1(AB179092|pid:none) Macaca fascicularis testis cDNA cl...    56   1e-06
AC015985_17(AC015985|pid:none) Arabidopsis thaliana chromosome I...    56   1e-06
AB005240_11(AB005240|pid:none) Arabidopsis thaliana genomic DNA,...    56   1e-06
AK289478_1(AK289478|pid:none) Homo sapiens cDNA FLJ77881 complet...    56   1e-06
AK315318_1(AK315318|pid:none) Homo sapiens cDNA, FLJ96350, highl...    56   1e-06
BC015063_1(BC015063|pid:none) Homo sapiens cell growth regulator...    56   1e-06

 psg: 0.66  gvh: 0.41  alm: 0.29  top: 0.77  tms: 0.07  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.15  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 1.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: cytoplasmic
	 20.0 %: nuclear
	 16.0 %: vesicles of secretory system
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  8.0 %: endoplasmic reticulum
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for VHA442 is cyt

>VHA442Z.Seq
NNNNNNNNNNTTCAAAAGATTTCCTCTACACTCAAAGAAAAGGAAACAATCATTCAATCA
TATCAAGAGATTATGAGTCAATTAAAATATAATTTAAAGGATTCATCATTAATGGATAAA
AAAGATTCTGCCATTGTTCAACTACTTTATCAATTTTCGTCAATAACAAATAATTGTGTT
GGTAGTAGTAGTGGTGGTAGTAGCAGTAGTAATAATAGCGGCGCTGGAGGTAGTATTAAT
CCAACAGAGAATATATTGTTGGTAAAAGAAACCATTGTAAATAAGTCATTAGAGATTCAA
TTGGAGGAATTGAAAAAGGAAAATCAAAAATTAAAAGAAAATTCAACAAATAATCAAACA
AAATTATTAGAGTACGATTTAATTAAGCAAACCATTACCAATAGGATACAGATAGAAGCT
GTTTCAGTTGATAATCTTTTAGGAGATAAATTGGATTCACTCGAGATGAAAGACCTTGAC
AAGTTGGAAGAACTCTACCATAACGTTTTAAAGAAAGTTGGTTCCGCCAAACAAGATCTA
CTTCAAAAACAACTATTAAAAATGCAAAGAGAAAAAGAAGAAAGTGCTGCAAATGGCAAT
GGTAAAACTTGTGTTGTTTGTGTTGATCTTTTAATTAATACCGTATTAGTACCTTGTAGA
CATAGTTGTATATGTAGTACTTGCTCAAAGAAATTATCACTTTGTCCACTTTGCAGAACC
CCAATTAAAG