VHA441
Library VH
(Link to library)
Clone ID VHA441
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12067-1
Original site URL
Representative seq. ID VHA441P
(Link to Original site)
Representative DNA sequence
>VHA441 (VHA441Q) /CSM/VH/VHA4-B/VHA441Q.Seq.d/
AGAAGTGGTGCTGCTCAAGGTTTATCAGAGGTTTTAGCTTCATTAGATATTAGTAGATTC
AATTCATTAATCAATGAATTGTTAGCAATGACCAATTCACCACGTCCACATGTTAGAGAA
GGTATTTTATCAATCTTTATTTTTACACCAATTTCTTTGGGTGATCTTTTCCTTCCATAT
CTTCCAAAAGTTTTACCACAAGTTTTGAAAGGTTTAGCTGATGATTCTGATCCAGTTCGT
GAAGTTTGTATGAGATGTGGTCAATCGATTGTTTTACAATTTGCAGTAACAGGTATTGAA
GTGATTGTTCCAGCCTTAGAGAAAGTATTATTCCATGAAAATTGGAGAATTCGTTTATCT
TGTGTTCAATTATTTGGTGATTTATTATTCAAATTAGCAGGTACAACCGCTCAAGAAGTC
CAATCAAATAATAGTTCTTATAATGCTAAAGATGATGATGATGATGAACCAGGTTCAAGT
GGTAATGATATTCAAAAGATTTTAGGTAAAGAAAGATTAGGTCGTATTCTTTCATCATTG
TATATGATGAGATTTGATAATAATTCATCAGTTCGTCAAAAGGTATTATTAATTTGGAAA
TATATTGTTAGTAATACACCAXXXXXXXXXXAAGCTACACTCGATAAAGCAATCGCCACC
ATTGTGGACTTCCTTTATCAACCTTCCGATGATCTCAGATCAATGGTCGCTCAAACTATT
GGTGCCTCTTCAAAATGTTTTACTTCTCTCACTGAATTGAATCAATTCATTAAAACCAAT
CTCATCTCACCTTCTCAATCAGTACTCTCTCGTTATGGTAAATCATTGGCATTGGGTGAA
ATTTTCAAAGCATCTGGTAAGAATTTAATCGATTCTCAATCACCAAATATGCCAACCATC
ATTAAAATCATTCAAACCGATTGTCGTGATGAAAAAGGTCCAATTCGTGAATCCTCTGCT
TATTTGGCTGAAGCTATTTTAGTTGCTTCGCCTTTAACCTATGCAAAGGATTTAGTACCT
TCCATTTGTCATCTCATTGGTGATCAATCATCTTCCGTATCAATTAGTGCTCTCAATGTT
ATTAAACGTTTCTGTAAATCAAATCAACAATTATCAAGACAATATTTACGTGATATTGTC
GTACCAACTATGAATAGATTAAAAGAAAGAACTAATTTACCTCTAAAATTAGCTGCTGAA
AGAACTTTAGTTCATTCACTTCAAATCTTTAAAGAATCCATTGTAATGGATGATTTAATT
AAACAATTAGAATTATCTGGTGATTCATCAATGGCAAATTCTTTAATTNATTATCATAAA
AGAGTTTTAAGAAATTATCACC
sequence update 2002.10.25
Translated Amino Acid sequence
RSGAAQGLSEVLASLDISRFNSLINELLAMTNSPRPHVREGILSIFIFTPISLGDLFLPY
LPKVLPQVLKGLADDSDPVREVCMRCGQSIVLQFAVTGIEVIVPALEKVLFHENWRIRLS
CVQLFGDLLFKLAGTTAQEVQSNNSSYNAKDDDDDEPGSSGNDIQKILGKERLGRILSSL
YMMRFDNNSSVRQKVLLIWKYIVSNTP---

---ATLDKAIATIVDFLYQPSDDLRSMVAQTIGASSKCFTSLTELNQFIKTNLISPSQSV
LSRYGKSLALGEIFKASGKNLIDSQSPNMPTIIKIIQTDCRDEKGPIRESSAYLAEAILV
ASPLTYAKDLVPSICHLIGDQSSSVSISALNVIKRFCKSNQQLSRQYLRDIVVPTMNRLK
ERTNLPLKLAAERTLVHSLQIFKESIVMDDLIKQLELSGDSSMANSLIXYHKRVLRNYH


Translated Amino Acid sequence (All Frames)
Frame A:
RSGAAQGLSEVLASLDISRFNSLINELLAMTNSPRPHVREGILSIFIFTPISLGDLFLPY
LPKVLPQVLKGLADDSDPVREVCMRCGQSIVLQFAVTGIEVIVPALEKVLFHENWRIRLS
CVQLFGDLLFKLAGTTAQEVQSNNSSYNAKDDDDDEPGSSGNDIQKILGKERLGRILSSL
YMMRFDNNSSVRQKVLLIWKYIVSNTP---

---klhsikqspplwtsfinlpmisdqwslkllvplqnvlllsln*inslkpisshllnq
yslvmvnhwhwvkfskhlvri*silnhqicqpslksfkpivvmkkvqfvnplliwlklf*
llrl*pmqri*ylpfvislvinhlpyqlvlsmllnvsvnqinnyqdniyvilsyql*id*
kkeliyl*n*llkel*fihfkslknpl*wmi*lnn*nylvihqwqil*xiiikef*eiit

Frame B:
evvllkvyqrf*lh*ilvdsih*smnc*q*pihhvhmlekvfyqslflhqflwvifsfhi
fqkfyhkf*kv*lmiliqfvkfv*dvvnrlfynlq*qvlk*lfqp*rkyysmkigefvyl
vfnylviyysn*qvqplkksnqiivlimlkmmmmmnqvqvvmifkrf*vkkd*vvffhhc
i**dliiihqfvkryy*fgnillvih---

---sytr*snrhhcglplstfr*sqingrsnywclfkmfyfsh*iesih*nqshltfsis
tlslw*iigig*nfqsiw*efnrfsitkyanhh*nhsnrls**krsns*ilclfg*syfs
cfafnlckgfstfhlsshw*siifrin*csqcy*tfl*ikstiiktift*ycrtnye*ik
rkn*ftskisc*knfssftsnl*rihcng*fn*tiriiw*fingkffnxls*ksfkkls

Frame C:
kwccsrfirgfsfiry**iqfinq*ivsndqfttstc*rryfinlyfytnffg*sfpsis
sksfttsferfs**f*sss*slyemwsidcfticsnry*sdcsslresiip*klensfil
csiiw*fiiqisrynrsrspik**fl*c*r*****trfkw**yskdfr*rkirsysfiiv
ydei***fissskgiinleiyc**yt---

---ATLDKAIATIVDFLYQPSDDLRSMVAQTIGASSKCFTSLTELNQFIKTNLISPSQSV
LSRYGKSLALGEIFKASGKNLIDSQSPNMPTIIKIIQTDCRDEKGPIRESSAYLAEAILV
ASPLTYAKDLVPSICHLIGDQSSSVSISALNVIKRFCKSNQQLSRQYLRDIVVPTMNRLK
ERTNLPLKLAAERTLVHSLQIFKESIVMDDLIKQLELSGDSSMANSLIXYHKRVLRNYH

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHA441 (VHA441Q) /CSM/VH/VHA4-B/VHA441Q.Seq.d/ 1669 0.0
VHB245 (VHB245Q) /CSM/VH/VHB2-B/VHB245Q.Seq.d/ 1374 0.0
VHI374 (VHI374Q) /CSM/VH/VHI3-D/VHI374Q.Seq.d/ 1368 0.0
VHC675 (VHC675Q) /CSM/VH/VHC6-D/VHC675Q.Seq.d/ 1364 0.0
SHF505 (SHF505Q) /CSM/SH/SHF5-A/SHF505Q.Seq.d/ 1358 0.0
VHA755 (VHA755Q) /CSM/VH/VHA7-C/VHA755Q.Seq.d/ 1269 0.0
VHO589 (VHO589Q) /CSM/VH/VHO5-D/VHO589Q.Seq.d/ 1265 0.0
VHK689 (VHK689Q) /CSM/VH/VHK6-D/VHK689Q.Seq.d/ 1261 0.0
VHL277 (VHL277Q) /CSM/VH/VHL2-D/VHL277Q.Seq.d/ 1219 0.0
VHF215 (VHF215Q) /CSM/VH/VHF2-A/VHF215Q.Seq.d/ 957 0.0

own update 2004.12.24
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC119982|AC119982.6 Mus musculus chromosome 19, clone RP24-498L9, complete sequence. 56 0.003 1
AC118724|AC118724.18 Mus musculus, clone RP24-160H20, complete sequence. 56 0.003 1
BH167468|BH167468.1 ENTSH94TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 50 0.16 1
BH163191|BH163191.1 ENTTE33TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 50 0.16 1
AZ531303|AZ531303.1 ENTCH17TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 50 0.16 1
ED460729|ED460729.1 AUAC-aao05g05.g1 Ascaris suum whole genome shotgun library (PMAJ_4 GSS) Ascaris suum genomic, genomic survey sequence. 50 0.16 1
ED450392|ED450392.1 AUAC-aan56c12.g1 Ascaris suum whole genome shotgun library (PMAJ_4 GSS) Ascaris suum genomic, genomic survey sequence. 50 0.16 1
ED393242|ED393242.1 AUAC-aai25f10.g1 Ascaris suum whole genome shotgun library (PMAJ_4 GSS) Ascaris suum genomic, genomic survey sequence. 50 0.16 1
ED186094|ED186094.1 AUAC-aah66a04.g1 Ascaris suum whole genome shotgun library (PMAJ_4 GSS) Ascaris suum genomic, genomic survey sequence. 50 0.16 1
BD453058|BD453058.1 Diagnosis of Diseases Associated with tumor suppressor genes and oncogenes. 40 0.69 2
dna update 2007. 3.16
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54WR2) RecName: Full=Translational activator gcn1; AltName: Fu... 443 e-123
(Q10105) RecName: Full=Translational activator gcn1; &CU329670_... 196 2e-48
AC146936_30(AC146936|pid:none) Oryza sativa (japonica cultivar-g... 194 5e-48
BC135787_1(BC135787|pid:none) Xenopus tropicalis GCN1 general co... 192 2e-47
AP008209_2460(AP008209|pid:none) Oryza sativa (japonica cultivar... 191 5e-47
AC004812_3(AC004812|pid:none) Homo sapiens PAC clone 267D11 from... 190 9e-47
BC168513_1(BC168513|pid:none) Danio rerio cDNA clone IMAGE:69620... 190 9e-47
U77700_1(U77700|pid:none) Homo sapiens HsGCN1 mRNA, partial cds. 190 9e-47
(Q99736) RecName: Full=Translational activator GCN1; AltName: Fu... 190 9e-47
D86973_1(D86973|pid:none) Homo sapiens mRNA for KIAA0219 gene, p... 190 9e-47
protein update 2009. 6.26
PSORT

psg: 0.81 gvh: 0.55 alm: 0.28 top: 0.50 tms: 0.13 mit: 0.25 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.50 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 1.00 m3b: 0.00 m_ : 0.00

28.0 %: mitochondrial
28.0 %: endoplasmic reticulum
20.0 %: plasma membrane
8.0 %: extracellular, including cell wall
4.0 %: vacuolar
4.0 %: Golgi
4.0 %: nuclear
4.0 %: vesicles of secretory system

>> prediction for VHA441 is mit

5' end seq. ID VHA441F
5' end seq.
>VHA441F.Seq
AGAAGTGGTGCTGCTCAAGGTTTATCAGAGGTTTTAGCTTCATTAGATATTAGTAGATTC
AATTCATTAATCAATGAATTGTTAGCAATGACCAATTCACCACGTCCACATGTTAGAGAA
GGTATTTTATCAATCTTTATTTTTACACCAATTTCTTTGGGTGATCTTTTCCTTCCATAT
CTTCCAAAAGTTTTACCACAAGTTTTGAAAGGTTTAGCTGATGATTCTGATCCAGTTCGT
GAAGTTTGTATGAGATGTGGTCAATCGATTGTTTTACAATTTGCAGTAACAGGTATTGAA
GTGATTGTTCCAGCCTTAGAGAAAGTATTATTCCATGAAAATTGGAGAATTCGTTTATCT
TGTGTTCAATTATTTGGTGATTTATTATTCAAATTAGCAGGTACAACCGCTCAAGAAGTC
CAATCAAATAATAGTTCTTATAATGCTAAAGATGATGATGATGATGAACCAGGTTCAAGT
GGTAATGATATTCAAAAGATTTTAGGTAAAGAAAGATTAGGTCGTATTCTTTCATCATTG
TATATGATGAGATTTGATAATAATTCATCAGTTCGTCAAAAGGTATTATTAATTTGGAAA
TATATTGTTAGTAATACACCANNNNNNNNNN
Length of 5' end seq. 631
3' end seq. ID VHA441Z
3' end seq.
>VHA441Z.Seq
NNNNNNNNNNAAGCTACACTCGATAAAGCAATCGCCACCATTGTGGACTTCCTTTATCAA
CCTTCCGATGATCTCAGATCAATGGTCGCTCAAACTATTGGTGCCTCTTCAAAATGTTTT
ACTTCTCTCACTGAATTGAATCAATTCATTAAAACCAATCTCATCTCACCTTCTCAATCA
GTACTCTCTCGTTATGGTAAATCATTGGCATTGGGTGAAATTTTCAAAGCATCTGGTAAG
AATTTAATCGATTCTCAATCACCAAATATGCCAACCATCATTAAAATCATTCAAACCGAT
TGTCGTGATGAAAAAGGTCCAATTCGTGAATCCTCTGCTTATTTGGCTGAAGCTATTTTA
GTTGCTTCGCCTTTAACCTATGCAAAGGATTTAGTACCTTCCATTTGTCATCTCATTGGT
GATCAATCATCTTCCGTATCAATTAGTGCTCTCAATGTTATTAAACGTTTCTGTAAATCA
AATCAACAATTATCAAGACAATATTTACGTGATATTGTCGTACCAACTATGAATAGATTA
AAAGAAAGAACTAATTTACCTCTAAAATTAGCTGCTGAAAGAACTTTAGTTCATTCACTT
CAAATCTTTAAAGAATCCATTGTAATGGATGATTTAATTAAACAATTAGAATTATCTGGT
GATTCATCAATGGCAAATTCTTTAATTNATTATCATAAAAGAGTTTTAAGAAATTATCAC
C
Length of 3' end seq. 721
Connected seq. ID VHA441P
Connected seq.
>VHA441P.Seq
AGAAGTGGTGCTGCTCAAGGTTTATCAGAGGTTTTAGCTTCATTAGATATTAGTAGATTC
AATTCATTAATCAATGAATTGTTAGCAATGACCAATTCACCACGTCCACATGTTAGAGAA
GGTATTTTATCAATCTTTATTTTTACACCAATTTCTTTGGGTGATCTTTTCCTTCCATAT
CTTCCAAAAGTTTTACCACAAGTTTTGAAAGGTTTAGCTGATGATTCTGATCCAGTTCGT
GAAGTTTGTATGAGATGTGGTCAATCGATTGTTTTACAATTTGCAGTAACAGGTATTGAA
GTGATTGTTCCAGCCTTAGAGAAAGTATTATTCCATGAAAATTGGAGAATTCGTTTATCT
TGTGTTCAATTATTTGGTGATTTATTATTCAAATTAGCAGGTACAACCGCTCAAGAAGTC
CAATCAAATAATAGTTCTTATAATGCTAAAGATGATGATGATGATGAACCAGGTTCAAGT
GGTAATGATATTCAAAAGATTTTAGGTAAAGAAAGATTAGGTCGTATTCTTTCATCATTG
TATATGATGAGATTTGATAATAATTCATCAGTTCGTCAAAAGGTATTATTAATTTGGAAA
TATATTGTTAGTAATACACCA----------AAGCTACACTCGATAAAGCAATCGCCACC
ATTGTGGACTTCCTTTATCAACCTTCCGATGATCTCAGATCAATGGTCGCTCAAACTATT
GGTGCCTCTTCAAAATGTTTTACTTCTCTCACTGAATTGAATCAATTCATTAAAACCAAT
CTCATCTCACCTTCTCAATCAGTACTCTCTCGTTATGGTAAATCATTGGCATTGGGTGAA
ATTTTCAAAGCATCTGGTAAGAATTTAATCGATTCTCAATCACCAAATATGCCAACCATC
ATTAAAATCATTCAAACCGATTGTCGTGATGAAAAAGGTCCAATTCGTGAATCCTCTGCT
TATTTGGCTGAAGCTATTTTAGTTGCTTCGCCTTTAACCTATGCAAAGGATTTAGTACCT
TCCATTTGTCATCTCATTGGTGATCAATCATCTTCCGTATCAATTAGTGCTCTCAATGTT
ATTAAACGTTTCTGTAAATCAAATCAACAATTATCAAGACAATATTTACGTGATATTGTC
GTACCAACTATGAATAGATTAAAAGAAAGAACTAATTTACCTCTAAAATTAGCTGCTGAA
AGAACTTTAGTTCATTCACTTCAAATCTTTAAAGAATCCATTGTAATGGATGATTTAATT
AAACAATTAGAATTATCTGGTGATTCATCAATGGCAAATTCTTTAATTNATTATCATAAA
AGAGTTTTAAGAAATTATCACC
Length of connected seq. 1332
Full length Seq ID -
Full length Seq. -
Length of full length seq. -