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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHA439
Library VH
(Link to library)
Clone ID VHA439
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11159-1|Contig-U12695-1
Original site URL
Representative seq. ID VHA439P
(Link to Original site)
Representative DNA sequence 
>VHA439 (VHA439Q) /CSM/VH/VHA4-B/VHA439Q.Seq.d/
TATTTTATAAGCTTTGAAGAAAATGAGAGAATTTTTAAAAGATGATTATGATGTAATAGT
TTGTGGTGGTGGTCCAGTTGGTTTGGCTACTGCATACAGATGTGCCAAAGCTGGAAAGAA
AGTACTTTGTCTCGAAAAATCAGTATTCTTTAATGGAGGTGGTAGTAGTGGTGATGTTGT
TAGAATGTTACGTACAATGTACACTGAAGATTATATGGCCGATTTAGCACATGAAACCCT
TGGACTCTGGAAAGAACTTGGTGATGATGCTGGTGAAGGTGATTTAGTTTGGATGACAGG
TCTCCTAAATTTTGGTGATCCAAATTCTGGTGCAGGTGGTCCAGAAGGTACTTTATTAGG
ACCAATTCCAAATTTAGAGAGATTGGGTATGCAATACAAAGTGTTAACTGCTCAAGAAAT
TATGGAAGAGTATCCATTTAGAAACATTCCATCCAATCACCAAGGTGTTTTTGCTCCAGA
CAATGGTGTTATCAATTTACCATTGGTATTACGTTCTCTTTACAAGTTATGTTTACAATA
TGGTTGTAAAATGGTAAGXXXXXXXXXXACCCTCCAACAATTATTTGTTGATTACAAATG
TTGGGATTGGNANAATGATGATTATTCATCAGGGGCATTTGNTTTTTACAGTCCATCNCA
ATTTTTTCAATTGTTCCCNTCNCTTANTAAACCNTCCCCANATGGTANATTCCNTTTAGN
TGGNGAAGCAACATNTGTTCATCANGGNTGGGTCATTGGTTTTTTTAACTNTGCCTATNG
NTCAGTCGATCNCATTTTTCAAGTTGAAGGTNTTGATGAGTTACGNGCCAAANTACGTTT
CAATTGGGGNTTNATCGANGAAGTTGAANATCCNCAANATGATCAACAATATGTTGACCC
NCATCNCAATTTAAGNGGTCCAAATGNTAAAAAATTCAGATCAAATGTATCCCAAGTTGC
CNTTCAACCAANATTNAAAGNTCCAANAAACTTTAAACCAANAAANACTGCTGNTAGTAN
TGGGGGTTTTAAATAAATCAAAACCNANTGTCNTTTATTAAATGAATTTTTTTTTTTTAG
AAAAAAAAAATAATAATAGTAATAATAAAAAAAGTAATAATAAAAACAGNAATAATAATA
ATAAAAACAAGGAAAT
sequence update 2002.10.25
Translated Amino Acid sequence 
il*ALKKMREFLKDDYDVIVCGGGPVGLATAYRCAKAGKKVLCLEKSVFFNGGGSSGDVV
RMLRTMYTEDYMADLAHETLGLWKELGDDAGEGDLVWMTGLLNFGDPNSGAGGPEGTLLG
PIPNLERLGMQYKVLTAQEIMEEYPFRNIPSNHQGVFAPDNGVINLPLVLRSLYKLCLQY
GCKMV---

---TLQQLFVDYKCWDWXNDDYSSGAFXFYSPSQFFQLFPSLXKPSPXGXFXLXGEATXV
HXGWVIGFFNXAYXSVDXIFQVEGXDELRAKXRFNWGXIXEVEXPQXDQQYVDPHXNLXG
PNXKKFRSNVSQVAXQPXXKXPXNFKPXXTAXSXGGFK*iktxcxllneffffrkkk***
***kk***kqx****kqgn
Translated Amino Acid sequence (All Frames) 
Frame A:
yfisfeenerifkr*l*cnslwwwsswfgyciqmcqswkestlsrkisil*wrw**w*cc
*nvtynvh*rlygrfst*npwtlertw**cw*r*fslddrspkfw*skfwcrwsrryfir
tnskfreigyaiqsvncsrnygrvsi*khsiqsprcfcsrqwcyqftigitfslqvmfti
wl*ngk---

---TLQQLFVDYKCWDWXNDDYSSGAFXFYSPSQFFQLFPSLXKPSPXGXFXLXGEATXV
HXGWVIGFFNXAYXSVDXIFQVEGXDELRAKXRFNWGXIXEVEXPQXDQQYVDPHXNLXG
PNXKKFRSNVSQVAXQPXXKXPXNFKPXXTAXSXGGFK*iktxcxllneffffrkkk***
***kk***kqx****kqgn

Frame B:
il*ALKKMREFLKDDYDVIVCGGGPVGLATAYRCAKAGKKVLCLEKSVFFNGGGSSGDVV
RMLRTMYTEDYMADLAHETLGLWKELGDDAGEGDLVWMTGLLNFGDPNSGAGGPEGTLLG
PIPNLERLGMQYKVLTAQEIMEEYPFRNIPSNHQGVFAPDNGVINLPLVLRSLYKLCLQY
GCKMV---

---psnnyllitnvgigxmmiihqghlxftvhxnffncsxxlxnxpxmvxsx*xxkqhxf
ixxgslvfltxpxxqsixffklkvlmsyxpxyvsigxxsxklxixxminnmltxixi*xv
qmxknsdqmypklpfnqxxkxqxtlnqxxllxvxgvlnkskpxvxy*mnffflekknnns
nnkksnnknxnnnnknke

Frame C:
fykl*rk*enf*kmimm**fvvvvqlvwllhtdvpklerkyfvsknqyslmevvvvvmll
ecyvqctlkiiwpi*hmkpldsgknlvmmlvkvi*fg*qvs*ilviqilvqvvqkvly*d
qfqi*rdwvcntkc*llkklwksihletfhpitkvfllqtmvlsiyhwyyvlftsyvynm
vvkw*---

---pptiic*lqmlglxx**lfirgixflqsixifsivpxxx*txpxwxipfxwxsnxcs
sxxghwff*lclxxsrshfss*rx**vtxqxtfqlgxxrxs*xsxx*stic*pxsqfkxs
kx*kiqikcipscxstxixxsxkl*txkxcx*xwgf*inqnxxsfik*ifff*kkkiiiv
iikkviiktxiiiiktrk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHA439 (VHA439Q) /CSM/VH/VHA4-B/VHA439Q.Seq.d/                       1744   0.0
VHQ418 (VHQ418Q) /CSM/VH/VHQ4-A/VHQ418Q.Seq.d/                       1098   0.0
VHQ415 (VHQ415Q) /CSM/VH/VHQ4-A/VHQ415Q.Seq.d/                       1098   0.0
VHP706 (VHP706Q) /CSM/VH/VHP7-A/VHP706Q.Seq.d/                       1098   0.0
VHP659 (VHP659Q) /CSM/VH/VHP6-C/VHP659Q.Seq.d/                       1098   0.0
VHO851 (VHO851Q) /CSM/VH/VHO8-C/VHO851Q.Seq.d/                       1098   0.0
VHO717 (VHO717Q) /CSM/VH/VHO7-A/VHO717Q.Seq.d/                       1098   0.0
VHO690 (VHO690Q) /CSM/VH/VHO6-D/VHO690Q.Seq.d/                       1098   0.0
VHM609 (VHM609Q) /CSM/VH/VHM6-A/VHM609Q.Seq.d/                       1098   0.0
VHM587 (VHM587Q) /CSM/VH/VHM5-D/VHM587Q.Seq.d/                       1098   0.0
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC009598|AC009598.3 Homo sapiens chromosome 8 clone RP11-223O12 map 8, WORKING DRAFTSEQUENCE, 9 unordered pieces.    40   0.10   4
CQ344998|CQ344998.1 Sequence 19092 from Patent WO0157275.          38   0.45   2
CQ308193|CQ308193.1 Sequence 19298 from Patent WO0186003.          38   0.45   2
CQ270885|CQ270885.1 Sequence 19146 from Patent WO0157277.          38   0.45   2
CQ232880|CQ232880.1 Sequence 19719 from Patent WO0157273.          38   0.45   2
CQ184373|CQ184373.1 Sequence 15769 from Patent WO0157274.          38   0.45   2
CQ149594|CQ149594.1 Sequence 19616 from Patent WO0157276.          38   0.45   2
CQ110849|CQ110849.1 Sequence 19708 from Patent WO0157272.          38   0.45   2
EJ261209|EJ261209.1 1095349040450 Global-Ocean-Sampling_GS-27-01-01-1P8-2P0KB marine metagenome genomic clone 1061005495618 3', genomic survey sequence.    48   0.55   1
EJ150489|EJ150489.1 1092343756363 Global-Ocean-Sampling_GS-27-01-01-1P8-2P0KB marine metagenome genomic clone 1061001453166 5', genomic survey sequence.    48   0.55   1
dna update 2007. 3.16
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CU638744_413(CU638744|pid:none) Podospora anserina genomic DNA c...   202   2e-50
Y18574_4(Y18574|pid:none) Streptomyces tendae strain Tue901, nik...   109   2e-22
AM286415_1545(AM286415|pid:none) Yersinia enterocolitica subsp. ...    80   1e-13
CP001291_5186(CP001291|pid:none) Cyanothece sp. PCC 7424, comple...    79   3e-13
(Q29RU9) RecName: Full=Peroxisomal sarcosine oxidase;          S...    77   9e-13
AY892312_1(AY892312|pid:none) Synthetic construct Homo sapiens c...    76   2e-12
BC114006_1(BC114006|pid:none) Bos taurus L-pipecolic acid oxidas...    76   2e-12
CR457155_1(CR457155|pid:none) Homo sapiens full open reading fra...    76   2e-12
AF134593_1(AF134593|pid:none) Homo sapiens L-pipecolic acid oxid...    76   2e-12
AX882278_1(AX882278|pid:none) Sequence 17183 from Patent EP10746...    76   2e-12
protein update 2009. 6.26
PSORT 

 psg: 0.67  gvh: 0.49  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.03  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 36.0 %: nuclear
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: Golgi

>> prediction for VHA439 is cyt
5' end seq. ID VHA439F
5' end seq. 
>VHA439F.Seq
TATTTTATAAGCTTTGAAGAAAATGAGAGAATTTTTAAAAGATGATTATGATGTAATAGT
TTGTGGTGGTGGTCCAGTTGGTTTGGCTACTGCATACAGATGTGCCAAAGCTGGAAAGAA
AGTACTTTGTCTCGAAAAATCAGTATTCTTTAATGGAGGTGGTAGTAGTGGTGATGTTGT
TAGAATGTTACGTACAATGTACACTGAAGATTATATGGCCGATTTAGCACATGAAACCCT
TGGACTCTGGAAAGAACTTGGTGATGATGCTGGTGAAGGTGATTTAGTTTGGATGACAGG
TCTCCTAAATTTTGGTGATCCAAATTCTGGTGCAGGTGGTCCAGAAGGTACTTTATTAGG
ACCAATTCCAAATTTAGAGAGATTGGGTATGCAATACAAAGTGTTAACTGCTCAAGAAAT
TATGGAAGAGTATCCATTTAGAAACATTCCATCCAATCACCAAGGTGTTTTTGCTCCAGA
CAATGGTGTTATCAATTTACCATTGGTATTACGTTCTCTTTACAAGTTATGTTTACAATA
TGGTTGTAAAATGGTAAGNNNNNNNNNN
Length of 5' end seq. 568
3' end seq. ID VHA439Z
3' end seq. 
>VHA439Z.Seq
NNNNNNNNNNACCCTCCAACAATTATTTGTTGATTACAAATGTTGGGATTGGNANAATGA
TGATTATTCATCAGGGGCATTTGNTTTTTACAGTCCATCNCAATTTTTTCAATTGTTCCC
NTCNCTTANTAAACCNTCCCCANATGGTANATTCCNTTTAGNTGGNGAAGCAACATNTGT
TCATCANGGNTGGGTCATTGGTTTTTTTAACTNTGCCTATNGNTCAGTCGATCNCATTTT
TCAAGTTGAAGGTNTTGATGAGTTACGNGCCAAANTACGTTTCAATTGGGGNTTNATCGA
NGAAGTTGAANATCCNCAANATGATCAACAATATGTTGACCCNCATCNCAATTTAAGNGG
TCCAAATGNTAAAAAATTCAGATCAAATGTATCCCAAGTTGCCNTTCAACCAANATTNAA
AGNTCCAANAAACTTTAAACCAANAAANACTGCTGNTAGTANTGGGGGTTTTAAATAAAT
CAAAACCNANTGTCNTTTATTAAATGAATTTTTTTTTTTTAGAAAAAAAAAATAATAATA
GTAATAATAAAAAAAGTAATAATAAAAACAGNAATAATAATAATAAAAACAAGGAAAT
Length of 3' end seq. 598
Connected seq. ID VHA439P
Connected seq. 
>VHA439P.Seq
TATTTTATAAGCTTTGAAGAAAATGAGAGAATTTTTAAAAGATGATTATGATGTAATAGT
TTGTGGTGGTGGTCCAGTTGGTTTGGCTACTGCATACAGATGTGCCAAAGCTGGAAAGAA
AGTACTTTGTCTCGAAAAATCAGTATTCTTTAATGGAGGTGGTAGTAGTGGTGATGTTGT
TAGAATGTTACGTACAATGTACACTGAAGATTATATGGCCGATTTAGCACATGAAACCCT
TGGACTCTGGAAAGAACTTGGTGATGATGCTGGTGAAGGTGATTTAGTTTGGATGACAGG
TCTCCTAAATTTTGGTGATCCAAATTCTGGTGCAGGTGGTCCAGAAGGTACTTTATTAGG
ACCAATTCCAAATTTAGAGAGATTGGGTATGCAATACAAAGTGTTAACTGCTCAAGAAAT
TATGGAAGAGTATCCATTTAGAAACATTCCATCCAATCACCAAGGTGTTTTTGCTCCAGA
CAATGGTGTTATCAATTTACCATTGGTATTACGTTCTCTTTACAAGTTATGTTTACAATA
TGGTTGTAAAATGGTAAG----------ACCCTCCAACAATTATTTGTTGATTACAAATG
TTGGGATTGGNANAATGATGATTATTCATCAGGGGCATTTGNTTTTTACAGTCCATCNCA
ATTTTTTCAATTGTTCCCNTCNCTTANTAAACCNTCCCCANATGGTANATTCCNTTTAGN
TGGNGAAGCAACATNTGTTCATCANGGNTGGGTCATTGGTTTTTTTAACTNTGCCTATNG
NTCAGTCGATCNCATTTTTCAAGTTGAAGGTNTTGATGAGTTACGNGCCAAANTACGTTT
CAATTGGGGNTTNATCGANGAAGTTGAANATCCNCAANATGATCAACAATATGTTGACCC
NCATCNCAATTTAAGNGGTCCAAATGNTAAAAAATTCAGATCAAATGTATCCCAAGTTGC
CNTTCAACCAANATTNAAAGNTCCAANAAACTTTAAACCAANAAANACTGCTGNTAGTAN
TGGGGGTTTTAAATAAATCAAAACCNANTGTCNTTTATTAAATGAATTTTTTTTTTTTAG
AAAAAAAAAATAATAATAGTAATAATAAAAAAAGTAATAATAAAAACAGNAATAATAATA
ATAAAAACAAGGAAAT
Length of connected seq. 1146
Full length Seq ID -
Full length Seq. -
Length of full length seq. -