VHA431
Library VH
(Link to library)
Clone ID VHA431
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12529-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>VHA431 (VHA431Q) /CSM/VH/VHA4-B/VHA431Q.Seq.d/
XXXXXXXXXXCTTAGAATTAACATTCAGTAAAGTGGTTGCATTGGATTTACTAATTTCAA
TGTGTAAACAAAAGAATGATTTCCCACTACTAAGAGAGATCTACCATATTAAAGATCAGT
CAAAAGAAATGGGTAATATCTATCTTCAAGAAGCATTATCCTCCCACCCATCTCAATTGG
ATCAAAGAATTAAAGCATACAATAAATCCATCGAGCATTACCATCACTCAAAGGATAAAG
ACGATCAAGCCACTTCAAAATTCATTGATGATCAAATTAAATTGGAAATGTTACAAAAGG
AATTAGAAACCAATTTACAAGATGAATCATTCGTTGGAATTTCAATCAATGATACAATCT
ATAAATTAATCACTATGAATCAACCAAGGAAAGCTCAATCAATTAGATCAGAATTTAAAG
TTCCTGATAAAAGATTTTGGTGGATTAAAATTAAAGCTCTTTCAATTATGAATGATTGGG
AAGAATTAATGAAATTTTCAAAAGAAAAAAAATCTCCAATTGGTTATGAACCTTTTGTTG
AAGTTTGTCTTGATCAAAAAAATCAAATTGAAGCTTTAAAATATATTCCAAAAATTACTG
ATATTTTNCCNAANANTCAATTCTACATTCAAATTGGTGNCTNTAGAGAAGCNGCTGATA
TGGCTTTTAAAGAGAGNAATT
sequence update 2002. 9.10
Translated Amino Acid sequence
---LELTFSKVVALDLLISMCKQKNDFPLLREIYHIKDQSKEMGNIYLQEALSSHPSQLD
QRIKAYNKSIEHYHHSKDKDDQATSKFIDDQIKLEMLQKELETNLQDESFVGISINDTIY
KLITMNQPRKAQSIRSEFKVPDKRFWWIKIKALSIMNDWEELMKFSKEKKSPIGYEPFVE
VCLDQKNQIEALKYIPKITDIXPXXQFYIQIGXXREAADMAFKEXN


Translated Amino Acid sequence (All Frames)
Frame A:
---LELTFSKVVALDLLISMCKQKNDFPLLREIYHIKDQSKEMGNIYLQEALSSHPSQLD
QRIKAYNKSIEHYHHSKDKDDQATSKFIDDQIKLEMLQKELETNLQDESFVGISINDTIY
KLITMNQPRKAQSIRSEFKVPDKRFWWIKIKALSIMNDWEELMKFSKEKKSPIGYEPFVE
VCLDQKNQIEALKYIPKITDIXPXXQFYIQIGXXREAADMAFKEXN


Frame B:
---*n*hsvkwlhwiy*fqcvnkrmishy*erstilkisqkkwvisifkkhyppthlnwi
kelkhtinpssititqriktikplqnslmiklnwkcykrn*kpiykmnhslefqsmiqsi
n*sl*inqgklnqldqnlkflikdfgglklklfql*migkn**nfqkkknlqlvmnlllk
fvlikkiklkl*nifqkllifxxxxnstfklvxxekxliwllkrxi


Frame C:
---riniq*sgcigftnfnv*tke*fpttkrdlpy*rsvkrng*ylssrsiilppisigs
kn*siq*ihralpslkg*rrsshfkih**sn*ignvtkgirnqftr*iirwnfnq*ynl*
inhyestkessin*iri*ss**kilvd*n*ssfnye*lgrineifkrkkisnwl*tfc*s
ls*skksn*sfkiyskny*yfxxxsilhsnwxl*rsx*ygf*rex


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHA431 (VHA431Q) /CSM/VH/VHA4-B/VHA431Q.Seq.d/ 1193 0.0
VHL811 (VHL811Q) /CSM/VH/VHL8-A/VHL811Q.Seq.d/ 1132 0.0
SHC872 (SHC872Q) /CSM/SH/SHC8-C/SHC872Q.Seq.d/ 977 0.0
AHI531 (AHI531Q) /CSM/AH/AHI5-B/AHI531Q.Seq.d/ 531 e-150
VSF824 (VSF824Q) /CSM/VS/VSF8-A/VSF824Q.Seq.d/ 285 4e-76
VSC317 (VSC317Q) /CSM/VS/VSC3-A/VSC317Q.Seq.d/ 36 0.67
VHK350 (VHK350Q) /CSM/VH/VHK3-C/VHK350Q.Seq.d/ 36 0.67
VHH832 (VHH832Q) /CSM/VH/VHH8-B/VHH832Q.Seq.d/ 36 0.67
VHA710 (VHA710Q) /CSM/VH/VHA7-A/VHA710Q.Seq.d/ 36 0.67
SSI528 (SSI528Q) /CSM/SS/SSI5-B/SSI528Q.Seq.d/ 36 0.67

own update 2002.12.20
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

EE001261|EE001261.1 ROE00007783 Rhizopus oryzae Company Rhizopus oryzae cDNA, mRNA sequence. 54 0.005 1
EE001244|EE001244.1 ROE00007879 Rhizopus oryzae Company Rhizopus oryzae cDNA, mRNA sequence. 54 0.005 1
EC999904|EC999904.1 ROE00007591 Rhizopus oryzae Company Rhizopus oryzae cDNA, mRNA sequence. 54 0.005 1
EC999895|EC999895.1 ROE00007687 Rhizopus oryzae Company Rhizopus oryzae cDNA, mRNA sequence. 54 0.005 1
CA175566|CA175566.1 SCJLST1019H02.g ST1 Saccharum officinarum cDNA clone SCJLST1019H02 5', mRNA sequence. 36 0.063 2
AC127711|AC127711.3 Rattus norvegicus clone CH230-62C14, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces. 38 0.24 5
AE014298|AE014298.4 Drosophila melanogaster chromosome X, complete sequence. 34 0.48 2
AC012376|AC012376.12 Drosophila melanogaster clone BACR48C12, complete sequence. 34 0.67 2
AC008337|AC008337.8 Drosophila melanogaster clone BACR02B03, complete sequence. 34 0.67 2
AC015339|AC015339.1 Drosophila melanogaster, *** SEQUENCING IN PROGRESS ***. 34 0.72 2
dna update 2007. 3.16
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q5E9L7) RecName: Full=Vacuolar protein sorting-associated prote... 143 5e-33
BC021291_1(BC021291|pid:none) Homo sapiens vacuolar protein sort... 140 3e-32
AL161656_10(AL161656|pid:none) Human DNA sequence from clone RP1... 140 3e-32
BC126431_1(BC126431|pid:none) Homo sapiens vacuolar protein sort... 140 3e-32
(Q9H269) RecName: Full=Vacuolar protein sorting-associated prote... 140 3e-32
AL834401_1(AL834401|pid:none) Homo sapiens mRNA; cDNA DKFZp547D2... 140 3e-32
BC064406_1(BC064406|pid:none) Homo sapiens vacuolar protein sort... 140 3e-32
AF308801_1(AF308801|pid:none) Homo sapiens vacuolar protein sort... 138 2e-31
BC081963_1(BC081963|pid:none) Rattus norvegicus vacuolar protein... 137 2e-31
BX890605_10(BX890605|pid:none) Mouse DNA sequence from clone RP2... 136 5e-31
protein update 2009. 6.26
PSORT

psg: 0.85 gvh: 0.55 alm: 0.37 top: 0.60 tms: 0.00 mit: 0.25 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

56.0 %: cytoplasmic
28.0 %: nuclear
8.0 %: mitochondrial
4.0 %: endoplasmic reticulum
4.0 %: peroxisomal

>> prediction for VHA431 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VHA431Z
3' end seq.
>VHA431Z.Seq
NNNNNNNNNNCTTAGAATTAACATTCAGTAAAGTGGTTGCATTGGATTTACTAATTTCAA
TGTGTAAACAAAAGAATGATTTCCCACTACTAAGAGAGATCTACCATATTAAAGATCAGT
CAAAAGAAATGGGTAATATCTATCTTCAAGAAGCATTATCCTCCCACCCATCTCAATTGG
ATCAAAGAATTAAAGCATACAATAAATCCATCGAGCATTACCATCACTCAAAGGATAAAG
ACGATCAAGCCACTTCAAAATTCATTGATGATCAAATTAAATTGGAAATGTTACAAAAGG
AATTAGAAACCAATTTACAAGATGAATCATTCGTTGGAATTTCAATCAATGATACAATCT
ATAAATTAATCACTATGAATCAACCAAGGAAAGCTCAATCAATTAGATCAGAATTTAAAG
TTCCTGATAAAAGATTTTGGTGGATTAAAATTAAAGCTCTTTCAATTATGAATGATTGGG
AAGAATTAATGAAATTTTCAAAAGAAAAAAAATCTCCAATTGGTTATGAACCTTTTGTTG
AAGTTTGTCTTGATCAAAAAAATCAAATTGAAGCTTTAAAATATATTCCAAAAATTACTG
ATATTTTNCCNAANANTCAATTCTACATTCAAATTGGTGNCTNTAGAGAAGCNGCTGATA
TGGCTTTTAAAGAGAGNAATT
Length of 3' end seq. 681
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -