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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHA418
Library VH
(Link to library)
Clone ID VHA418
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11459-1
Original site URL
Representative seq. ID VHA418P
(Link to Original site)
Representative DNA sequence 
>VHA418 (VHA418Q) /CSM/VH/VHA4-A/VHA418Q.Seq.d/
ATATTCATATATATAGAATTTCAATAGGATACGAATATGAGTAGTGGAATATCATTTGCA
AGAAATCTACATATTAGAATTAAAAATGGTGTTACATCAGCACCATTTGGTTATGCATCA
GTATTGAAATTTGGTATACCAGTGATACCACCAAGAACTCCAGGTAAAATTGAAGTTATT
GAATCACCAATTATAAAATATGCACAAGAATTTGCTGATAGTCATCGTGAAATTGGCTAT
TTAACAGATAATCGTTTATCACAAGATGCATACAATTATGCAAGTTTAAAACTTTCATAC
ATGAAAAAAGGTTTAAGTGAATCACAAGCTAATACACAAGCAAAAAAAGATGTTATAAAA
AATTTAGAAGTTCGTTCATTAGAGTTGGATCTCATTCAAAATCAAGCTCTTAAAATTGGT
ATTCCATCTTTTCAACCAAAATCTCATTTAGAACAAATTAATACTTTAACAAAAAAAGTT
GAAGATCGTAGAGCAGAATATGAAATTATTGAAGCAAGAGAAAAATTAGAAGGTACATTG
GCACTTAAATTTCAATATGGTGATATGACACCATTAACATTATCAAATGTATCATTATTA
TCACCAATTCAATATTTTATTTTTGTTAAXXXXXXXXXXACAGATATTGAAATGGAAATT
GTGGAAATCTTGGAAAGTTTAACAAATCAATCATTGACCGCCAGAAAGAATGCTCATAAT
CATCTATACCCAGAGTATAAGAATGCCTCAAAGTCAATCATCAATGAAAAGAAGATCTCT
GAAGATTTAATTAGATATGTTATCGATTCTGATCTCATCTCTCATAAATATAATGTTGCC
CCATCCATCGATAAAGAAGACAAGGTCGATTTTAGAACTTTGAAATTGGATCCAGAAACT
GAGCATCAATATGCCCACCACATTAAAGAGTTTAGAGATAAAGATGCCAAAGGTCTCATC
TCTCAACAAGATGCCTTTGAATTTACAAATTACATCAACTACTTAAAGGAAAGTTCTGCT
ACTTCTCCAATCATTCAATCTCTTAAATCTTCAATTCATATGAAATCAAATAACAATGAA
CTCATCGATCAATTCAATGCTGAATCTTTAGAAAAAGATACCACCACCACCGATAAACTC
TCCCCTGAAGGTTTGTTCTTTAAGCAACTCGGAGAAATGTTCCCTTCCGAAGCTGATAAA
GAAATTGCTATCAATACTCTCTTATATCAAAATAATAAAAATCAAAAGATTCAAAAACTT
GAAAATGATTTGGTTAATGCAATCTCTAAGGATTCCACCATTCGTATTCCTTCTCCAAAA
GAATTAAATCAATCTCTTGCTGATGCCAAAGTTGAATTCTCCAAAAAAACTTTAACTTCA
AAGGNATCAATT
sequence update 2002.10.25
Translated Amino Acid sequence 
ifiyiefq*DTNMSSGISFARNLHIRIKNGVTSAPFGYASVLKFGIPVIPPRTPGKIEVI
ESPIIKYAQEFADSHREIGYLTDNRLSQDAYNYASLKLSYMKKGLSESQANTQAKKDVIK
NLEVRSLELDLIQNQALKIGIPSFQPKSHLEQINTLTKKVEDRRAEYEIIEAREKLEGTL
ALKFQYGDMTPLTLSNVSLLSPIQYFIFV---

---TDIEMEIVEILESLTNQSLTARKNAHNHLYPEYKNASKSIINEKKISEDLIRYVIDS
DLISHKYNVAPSIDKEDKVDFRTLKLDPETEHQYAHHIKEFRDKDAKGLISQQDAFEFTN
YINYLKESSATSPIIQSLKSSIHMKSNNNELIDQFNAESLEKDTTTTDKLSPEGLFFKQL
GEMFPSEADKEIAINTLLYQNNKNQKIQKLENDLVNAISKDSTIRIPSPKELNQSLADAK
VEFSKKTLTSKXSI
Translated Amino Acid sequence (All Frames) 
Frame A:
ifiyiefq*DTNMSSGISFARNLHIRIKNGVTSAPFGYASVLKFGIPVIPPRTPGKIEVI
ESPIIKYAQEFADSHREIGYLTDNRLSQDAYNYASLKLSYMKKGLSESQANTQAKKDVIK
NLEVRSLELDLIQNQALKIGIPSFQPKSHLEQINTLTKKVEDRRAEYEIIEAREKLEGTL
ALKFQYGDMTPLTLSNVSLLSPIQYFIFV---

---TDIEMEIVEILESLTNQSLTARKNAHNHLYPEYKNASKSIINEKKISEDLIRYVIDS
DLISHKYNVAPSIDKEDKVDFRTLKLDPETEHQYAHHIKEFRDKDAKGLISQQDAFEFTN
YINYLKESSATSPIIQSLKSSIHMKSNNNELIDQFNAESLEKDTTTTDKLSPEGLFFKQL
GEMFPSEADKEIAINTLLYQNNKNQKIQKLENDLVNAISKDSTIRIPSPKELNQSLADAK
VEFSKKTLTSKXSI

Frame B:
ysyi*nfnriri*vveyhlqeiyilelkmvlhqhhlvmhqy*nlvyq*yhqelqvklkll
nhql*nmhknllivivklai*qiivyhkmhtimqv*nfht*kkv*vnhklihkqkkml*k
i*kfvh*swisfkikllklvfhlfnqnli*nklil*qkklkiveqnmkllkqekn*kvhw
hlnfnmvi*hh*hyqmyhyyhqfnilfll---

---qilkwklwkswkv*qinh*ppermliiiytqsirmpqsqssmkrrslki*ldmlsil
isslinimlphpsikktrsilel*nwiqklsinmpttlksleikmpkvsslnkmplnlqi
tstt*rkvllllqsfnllnlqfi*nqitmnssinsmlnl*kkippppinsplkvcslsns
ekcslpklikkllsilsyikiikikrfknlkmiwlmqslrippfvfllqkn*inlllmpk
lnspkkl*lqrxq

Frame C:
ihiyrisigyeye*wniickksty*n*kwcyistiwlcisieiwytsdttknsr*n*sy*
itnykictric**ss*nwlfnr*sfitrciqlckfktfihekrfk*its*ytskkrcykk
frssfirvgshsksss*nwysifstkisfrtn*yfnkks*rs*sri*ny*skrkirryig
t*isiw*ydtiniikciiiitnsifyfc*---

---ry*ngncgnlgkfnksiidrqkecs*ssiprv*eclkvnhq*kedl*rfn*icyrf*
shls*i*ccpihr*rrqgrf*nfeigsrn*asicpph*rv*r*rcqrshlstrcl*iykl
hqllkgkfcyfsnhsis*ifnsyeik*q*thrsiqc*ifrkryhhhr*tlp*rfvl*atr
rnvpfrs**rncyqyslisk**kskdskt*k*fg*cnl*gfhhsysfskriksisc*cqs
*ilqknfnfkgin
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHA418 (VHA418Q) /CSM/VH/VHA4-A/VHA418Q.Seq.d/                       2286   0.0
VHN206 (VHN206Q) /CSM/VH/VHN2-A/VHN206Q.Seq.d/                       1162   0.0
VHA130 (VHA130Q) /CSM/VH/VHA1-B/VHA130Q.Seq.d/                       1162   0.0
VHG269 (VHG269Q) /CSM/VH/VHG2-C/VHG269Q.Seq.d/                       1156   0.0
VHM828 (VHM828Q) /CSM/VH/VHM8-B/VHM828Q.Seq.d/                       1144   0.0
VHN232 (VHN232Q) /CSM/VH/VHN2-B/VHN232Q.Seq.d/                       1136   0.0
SHK605 (SHK605Q) /CSM/SH/SHK6-A/SHK605Q.Seq.d/                       1134   0.0
AHL671 (AHL671Q) /CSM/AH/AHL6-C/AHL671Q.Seq.d/                       1098   0.0
VHC224 (VHC224Q) /CSM/VH/VHC2-A/VHC224Q.Seq.d/                       1096   0.0
VHO315 (VHO315Q) /CSM/VH/VHO3-A/VHO315Q.Seq.d/                       1084   0.0
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

EJ232326|EJ232326.1 1092404030385 Global-Ocean-Sampling_GS-27-01-01-1P8-2P0KB marine metagenome genomic clone 1061001533792 5', genomic survey sequence.    44   0.005  2
DQ630521|DQ630521.1 Stigeoclonium helveticum strain UTEX 441 chloroplast, complete genome.    38   0.59   8
EJ423057|EJ423057.1 1093012243138 Global-Ocean-Sampling_GS-28-01-01-1P6-2P0KB marine metagenome genomic clone 1061002293369 3', genomic survey sequence.    36   0.84   2
EJ995204|EJ995204.1 1093023082745 Global-Ocean-Sampling_GS-30-02-01-1P0-1P3KB marine metagenome genomic clone 1061002898451 5', genomic survey sequence.    46   2.6    1
EJ945654|EJ945654.1 1093018911701 Global-Ocean-Sampling_GS-30-02-01-1P0-1P3KB marine metagenome genomic clone 1061002898451 3', genomic survey sequence.    46   2.6    1
EJ438102|EJ438102.1 1093015290499 Global-Ocean-Sampling_GS-28-01-01-1P6-2P0KB marine metagenome genomic clone 1061002356553 5', genomic survey sequence.    46   2.6    1
ER535512|ER535512.1 1093015835361 Global-Ocean-Sampling_GS-35-01-01-1P5KB marine metagenome genomic clone 1061002539575 3', genomic survey sequence.    46   2.6    1
ED419185|ED419185.1 AUAC-aab08f12.g1 Ascaris suum whole genome shotgun library (PMAJ_4 GSS) Ascaris suum genomic, genomic survey sequence.    46   2.6    1
ED361276|ED361276.1 AUAC-aal14e01.b1 Ascaris suum whole genome shotgun library (PMAJ_4 GSS) Ascaris suum genomic, genomic survey sequence.    46   2.6    1
ED337566|ED337566.1 AUAC-aao38c10.g1 Ascaris suum whole genome shotgun library (PMAJ_4 GSS) Ascaris suum genomic, genomic survey sequence.    46   2.6    1
dna update 2007. 3.15
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF202180_1(AF202180|pid:none) Plasmodium falciparum erythrocyte ...    50   1e-04
AE014186_473(AE014186|pid:none) Plasmodium falciparum 3D7 chromo...    50   1e-04
CU179680_105(CU179680|pid:none) Mycoplasma agalactiae PG2 chromo...    47   0.002
CP000764_1309(CP000764|pid:none) Bacillus cereus subsp. cytotoxi...    41   0.090
CP001357_1786(CP001357|pid:none) Brachyspira hyodysenteriae WA1,...    40   0.20
AF130119_2(AF130119|pid:none) Mycoplasma bovis oligopeptide perm...    40   0.20
T28676(T28676;A45521)rhoptry protein - Plasmodium yoelii (fragme...    40   0.26
CP000383_40(CP000383|pid:none) Cytophaga hutchinsonii ATCC 33406...    40   0.26
AE001362_41(AE001362|pid:none) Plasmodium falciparum 3D7 chromos...    39   0.45
AF315282_1(AF315282|pid:none) Plasmodium yoelii yoelii p235 rhop...    39   0.45
protein update 2009. 6.26
PSORT 

 psg: 0.75  gvh: 0.40  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.28  mip: 0.08
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 24.0 %: cytoplasmic
	 16.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for VHA418 is nuc
5' end seq. ID VHA418F
5' end seq. 
>VHA418F.Seq
ATATTCATATATATAGAATTTCAATAGGATACGAATATGAGTAGTGGAATATCATTTGCA
AGAAATCTACATATTAGAATTAAAAATGGTGTTACATCAGCACCATTTGGTTATGCATCA
GTATTGAAATTTGGTATACCAGTGATACCACCAAGAACTCCAGGTAAAATTGAAGTTATT
GAATCACCAATTATAAAATATGCACAAGAATTTGCTGATAGTCATCGTGAAATTGGCTAT
TTAACAGATAATCGTTTATCACAAGATGCATACAATTATGCAAGTTTAAAACTTTCATAC
ATGAAAAAAGGTTTAAGTGAATCACAAGCTAATACACAAGCAAAAAAAGATGTTATAAAA
AATTTAGAAGTTCGTTCATTAGAGTTGGATCTCATTCAAAATCAAGCTCTTAAAATTGGT
ATTCCATCTTTTCAACCAAAATCTCATTTAGAACAAATTAATACTTTAACAAAAAAAGTT
GAAGATCGTAGAGCAGAATATGAAATTATTGAAGCAAGAGAAAAATTAGAAGGTACATTG
GCACTTAAATTTCAATATGGTGATATGACACCATTAACATTATCAAATGTATCATTATTA
TCACCAATTCAATATTTTATTTTTGTTAANNNNNNNNNN
Length of 5' end seq. 639
3' end seq. ID VHA418Z
3' end seq. 
>VHA418Z.Seq
NNNNNNNNNNACAGATATTGAAATGGAAATTGTGGAAATCTTGGAAAGTTTAACAAATCA
ATCATTGACCGCCAGAAAGAATGCTCATAATCATCTATACCCAGAGTATAAGAATGCCTC
AAAGTCAATCATCAATGAAAAGAAGATCTCTGAAGATTTAATTAGATATGTTATCGATTC
TGATCTCATCTCTCATAAATATAATGTTGCCCCATCCATCGATAAAGAAGACAAGGTCGA
TTTTAGAACTTTGAAATTGGATCCAGAAACTGAGCATCAATATGCCCACCACATTAAAGA
GTTTAGAGATAAAGATGCCAAAGGTCTCATCTCTCAACAAGATGCCTTTGAATTTACAAA
TTACATCAACTACTTAAAGGAAAGTTCTGCTACTTCTCCAATCATTCAATCTCTTAAATC
TTCAATTCATATGAAATCAAATAACAATGAACTCATCGATCAATTCAATGCTGAATCTTT
AGAAAAAGATACCACCACCACCGATAAACTCTCCCCTGAAGGTTTGTTCTTTAAGCAACT
CGGAGAAATGTTCCCTTCCGAAGCTGATAAAGAAATTGCTATCAATACTCTCTTATATCA
AAATAATAAAAATCAAAAGATTCAAAAACTTGAAAATGATTTGGTTAATGCAATCTCTAA
GGATTCCACCATTCGTATTCCTTCTCCAAAAGAATTAAATCAATCTCTTGCTGATGCCAA
AGTTGAATTCTCCAAAAAAACTTTAACTTCAAAGGNATCAATT
Length of 3' end seq. 763
Connected seq. ID VHA418P
Connected seq. 
>VHA418P.Seq
ATATTCATATATATAGAATTTCAATAGGATACGAATATGAGTAGTGGAATATCATTTGCA
AGAAATCTACATATTAGAATTAAAAATGGTGTTACATCAGCACCATTTGGTTATGCATCA
GTATTGAAATTTGGTATACCAGTGATACCACCAAGAACTCCAGGTAAAATTGAAGTTATT
GAATCACCAATTATAAAATATGCACAAGAATTTGCTGATAGTCATCGTGAAATTGGCTAT
TTAACAGATAATCGTTTATCACAAGATGCATACAATTATGCAAGTTTAAAACTTTCATAC
ATGAAAAAAGGTTTAAGTGAATCACAAGCTAATACACAAGCAAAAAAAGATGTTATAAAA
AATTTAGAAGTTCGTTCATTAGAGTTGGATCTCATTCAAAATCAAGCTCTTAAAATTGGT
ATTCCATCTTTTCAACCAAAATCTCATTTAGAACAAATTAATACTTTAACAAAAAAAGTT
GAAGATCGTAGAGCAGAATATGAAATTATTGAAGCAAGAGAAAAATTAGAAGGTACATTG
GCACTTAAATTTCAATATGGTGATATGACACCATTAACATTATCAAATGTATCATTATTA
TCACCAATTCAATATTTTATTTTTGTTAA----------ACAGATATTGAAATGGAAATT
GTGGAAATCTTGGAAAGTTTAACAAATCAATCATTGACCGCCAGAAAGAATGCTCATAAT
CATCTATACCCAGAGTATAAGAATGCCTCAAAGTCAATCATCAATGAAAAGAAGATCTCT
GAAGATTTAATTAGATATGTTATCGATTCTGATCTCATCTCTCATAAATATAATGTTGCC
CCATCCATCGATAAAGAAGACAAGGTCGATTTTAGAACTTTGAAATTGGATCCAGAAACT
GAGCATCAATATGCCCACCACATTAAAGAGTTTAGAGATAAAGATGCCAAAGGTCTCATC
TCTCAACAAGATGCCTTTGAATTTACAAATTACATCAACTACTTAAAGGAAAGTTCTGCT
ACTTCTCCAATCATTCAATCTCTTAAATCTTCAATTCATATGAAATCAAATAACAATGAA
CTCATCGATCAATTCAATGCTGAATCTTTAGAAAAAGATACCACCACCACCGATAAACTC
TCCCCTGAAGGTTTGTTCTTTAAGCAACTCGGAGAAATGTTCCCTTCCGAAGCTGATAAA
GAAATTGCTATCAATACTCTCTTATATCAAAATAATAAAAATCAAAAGATTCAAAAACTT
GAAAATGATTTGGTTAATGCAATCTCTAAGGATTCCACCATTCGTATTCCTTCTCCAAAA
GAATTAAATCAATCTCTTGCTGATGCCAAAGTTGAATTCTCCAAAAAAACTTTAACTTCA
AAGGNATCAATT
Length of connected seq. 1382
Full length Seq ID -
Full length Seq. -
Length of full length seq. -