>VHA408 (VHA408Q) /CSM/VH/VHA4-A/VHA408Q.Seq.d/
ATATCCTTTTTTTTCTTTTTAAATAAAAATAAAATAAAAATATAAAAAAAAATAAAAAAA
TTAAAAATGAACTATTTAAAACCAACAATATTTTTAATATTGTGTTTGGTCACATTTGTA
TATTCACAACCATCAACTTTAACAATTCAAGGAACAATTTTTGATCAACATCCAGATTAT
AATAACAATTTCGAACCAAAGGGAGGATCCATTAAAAAAAATTTAGTCTTAAAAACTCTT
GGAAGTAGCAAAGTACCAACTCTTGTTTCTTTAGATCCAGAGGATGATACAAATGAAGAT
GGTAGAATGATTACACCAAGCTTGTTCCAATACTTTTATCAAACATCATCAAAACCATTA
ACCAAAAATTCTGGTGCAAATGTCCCAATTCCAATTAACCTTGTCTTGAATTACGATTCC
AAAAAACAAGTTTATGTTTACAATGATCAATATTTTTTCCCAATTGATTACCAAGGATTT
GATGTTGATTCAAAATATAGAACTTATAATAATGGTTCAGGATATCATAATTTCCATTTT
TGTTTAAAATTGAATACTAAATTCACCTATCAAGXXXXXXXXXXCAAATGTTCAGGTTGT
ATGACTTGTAATCCAGTTTCTGGTAATTGTGATTTATCCGACACCGTTTGCCAAGATGGT
AATGAATGTACTACCAATGTTTGTGAATCAAGTGATAGTGTCCTTGGTGTATGTACAAAC
TCAACAGTTGAATGCGGTGCTACCAACACTGATAAATGTATCCAATTCTCTTGTAATGAA
GCCACCGGTTGCCAACAATCAGCTGTCGTTTGTCCAGATGTTGGTAGTTGTTTAGTTGGT
TATTGTGATAGTAAACAAGGTTGTCTCACCAAACCAAGATCTTGCGATACTGGTGTTTTC
TGTTTAACTGGTGAATGTATTGAAAATGCTGGTGGTTGTATCGTCTATGAAAAACGTTGT
GATGCTGATAATGGAAGATGTCAACAAGGTGTATGTGTAAATAATACCGCCACTGAAGAA
GGTTATTGTAAATCTGAAGACTATGATCCATTACCATTCATTTGTAAAACTGGTGCTGTC
GTTTCAACTGCTGTCATTGCTGGTGTCACTGTCGCTGGTGCTGTTGCACTTGGTGTTTTC
ATTTATGGTGGTAAAAGAGGTTATGACTATTGGAAAGAATCAAGAAATGTTCAATTCAGT
GGTTCAAATTCTAATCCACTTTATGAACAAAATCCAAATGGTTCTGGTGTAAATCCATTA
TATAATNATAATTCTGCATTATAAAATAAAATTACGTCTATATAAATCCTTATTTATTCG
AAAT

isfffflnknkiki*KKIKKLKMNYLKPTIFLILCLVTFVYSQPSTLTIQGTIFDQHPDY
NNNFEPKGGSIKKNLVLKTLGSSKVPTLVSLDPEDDTNEDGRMITPSLFQYFYQTSSKPL
TKNSGANVPIPINLVLNYDSKKQVYVYNDQYFFPIDYQGFDVDSKYRTYNNGSGYHNFHF
CLKLNTKFTYQ---

---KCSGCMTCNPVSGNCDLSDTVCQDGNECTTNVCESSDSVLGVCTNSTVECGATNTDK
CIQFSCNEATGCQQSAVVCPDVGSCLVGYCDSKQGCLTKPRSCDTGVFCLTGECIENAGG
CIVYEKRCDADNGRCQQGVCVNNTATEEGYCKSEDYDPLPFICKTGAVVSTAVIAGVTVA
GAVALGVFIYGGKRGYDYWKESRNVQFSGSNSNPLYEQNPNGSGVNPLYNXNSAL*nkit
si*iliysk

Frame A:
isfffflnknkiki*KKIKKLKMNYLKPTIFLILCLVTFVYSQPSTLTIQGTIFDQHPDY
NNNFEPKGGSIKKNLVLKTLGSSKVPTLVSLDPEDDTNEDGRMITPSLFQYFYQTSSKPL
TKNSGANVPIPINLVLNYDSKKQVYVYNDQYFFPIDYQGFDVDSKYRTYNNGSGYHNFHF
CLKLNTKFTYQ---

---qmfrlydl*ssfw*l*firhrlprw**myyqcl*ik**cpwcmyklns*mrcyqh**
mypill**shrlptiscrlsrcw*lfswll***trlshqtkilrywcflfnw*my*kcww
lyrl*ktl*c**wkmstrcmck*yrh*rrll*i*rl*sitihl*nwccrfncchcwchcr
wccctwcfhlww*krl*llerikkcsiqwfkf*stl*tkskwfwcksii*x*fciik*ny
vyinpylfe

Frame B:
ypffsf*ikik*kykkk*kn*k*ti*nqqyf*ycvwshlyihnhql*qfkeqfliniqii
itisnqredplkki*s*kllevakyqllfl*iqrmiqmkmve*lhqacsntfikhhqnh*
pkilvqmsqfqltls*itipknkfmftminifsqlitkdlmliqnieliimvqdiiisif
v*n*ilnspik---

---KCSGCMTCNPVSGNCDLSDTVCQDGNECTTNVCESSDSVLGVCTNSTVECGATNTDK
CIQFSCNEATGCQQSAVVCPDVGSCLVGYCDSKQGCLTKPRSCDTGVFCLTGECIENAGG
CIVYEKRCDADNGRCQQGVCVNNTATEEGYCKSEDYDPLPFICKTGAVVSTAVIAGVTVA
GAVALGVFIYGGKRGYDYWKESRNVQFSGSNSNPLYEQNPNGSGVNPLYNXNSAL*nkit
si*iliysk

Frame C:
ilfflfk*k*nknikknkkiknelfktnnifnivfghicifttinfnnsrnnf*stsrl*
*qfrtkgrih*kkfslknswk*qstnscffrsrg*yk*rw*ndytklvpillsniiktin
qkfwckcpnsn*pclelrfqktslclq*siffpn*lpri*c*fki*nl**wfris*fpfl
fkiey*ihls---

---nvqvv*lviqflviviyptpfakmvmnvlpmfvnqvivslvyvqtqqlnavlptlin
vsnslvmkppvannqlsfvqmlvvv*lvivivnkvvspnqdlailvfsv*lvnvlkmlvv
vssmknvvmlimedvnkvyv*iipplkkvivnlktmihyhsfvklvlsfqllsllvslsl
vllhlvfsfmvvkevmtigknqemfnsvvqilihfmnkiqmvlv*ihyixiilhykiklr
lykslfirn

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHA408 (VHA408Q) /CSM/VH/VHA4-A/VHA408Q.Seq.d/                       2379   0.0
VFM306 (VFM306Q) /CSM/VF/VFM3-A/VFM306Q.Seq.d/                       1453   0.0
VFG436 (VFG436Q) /CSM/VF/VFG4-B/VFG436Q.Seq.d/                       1453   0.0
VHI823 (VHI823Q) /CSM/VH/VHI8-A/VHI823Q.Seq.d/                       1433   0.0
VHA180 (VHA180Q) /CSM/VH/VHA1-D/VHA180Q.Seq.d/                       1431   0.0
VHP731 (VHP731Q) /CSM/VH/VHP7-B/VHP731Q.Seq.d/                       1429   0.0
VHI743 (VHI743Q) /CSM/VH/VHI7-B/VHI743Q.Seq.d/                       1429   0.0
VHB544 (VHB544Q) /CSM/VH/VHB5-B/VHB544Q.Seq.d/                       1429   0.0
VHP644 (VHP644Q) /CSM/VH/VHP6-B/VHP644Q.Seq.d/                       1425   0.0
VHH796 (VHH796Q) /CSM/VH/VHH7-D/VHH796Q.Seq.d/                       1413   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U67940|U67940.1 Dictyostelium discoideum ORFveg106 mRNA, complete cds.  1453   0.0    1
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.   113   1e-26  12
AC024031|AC024031.3 Homo sapiens chromosome 11 clone RP11-195I23, WORKING DRAFT SEQUENCE, 25 unordered pieces.    44   0.14   4
AE014308|AE014308.1 Homo sapiens chromosome 13q34 schizophrenia region contig 1 section 5 of 11 of the complete sequence.    42   0.37   6
DU908247|DU908247.1 376116 Tomato EcoRI BAC Library Solanum lycopersicum genomic clone SL_EcoRI0096N12 3, genomic survey sequence.    32   0.59   3
H71387|H71387.1 yu55f03.r1 Soares fetal liver spleen 1NFLS Homo sapiens cDNA clone IMAGE:230045 5', mRNA sequence.    48   0.63   1
CR954190|CR954190.1 Medicago truncatula chromosome 5 clone mth2-17o13, WORKING DRAFT  SEQUENCE, 2 ordered pieces.    48   0.63   1
AC130652|AC130652.27 Medicago truncatula clone mth1-1k12, complete sequence.    48   0.63   1
AC129090|AC129090.22 Medicago truncatula clone mth2-14i8, complete sequence.    48   0.63   1
AM469150|AM469150.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X171089.5, clone ENTAV 115.    38   0.67   4

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q94494) RecName: Full=Protein psiH; Flags: Precursor;  &U67940_...   451   e-125
(Q86HT1) RecName: Full=Protein psiL; Flags: Precursor;  &AC11695...   225   3e-57
(Q54VS2) RecName: Full=Protein psiP; Flags: Precursor;                223   9e-57
(Q54P69) RecName: Full=Protein psiM; Flags: Precursor;                194   6e-48
(Q557E9) RecName: Full=Protein psiG; Flags: Precursor;  &AC11568...   182   3e-44
(Q55FQ4) RecName: Full=Protein psiB; Flags: Precursor;                141   6e-32
(Q54CH8) RecName: Full=Protein psiN; Flags: Precursor;                139   2e-31
(Q54G85) RecName: Full=Protein psiJ; Flags: Precursor;                136   1e-30
(Q55FQ5) RecName: Full=Protein psiS; Flags: Precursor;                127   9e-28
(Q968Z6) RecName: Full=Protein psiA; AltName: Full=Prespore-cell...   126   2e-27

 psg: 0.71  gvh: 0.88  alm: 0.22  top: -0.03  tms: 0.13  mit: 0.36  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 36.0 %: endoplasmic reticulum
	 24.0 %: mitochondrial
	 16.0 %: plasma membrane
	  8.0 %: extracellular, including cell wall
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system
	  4.0 %: nuclear
	  4.0 %: cytoplasmic

>> prediction for VHA408 is end

>VHA408F.Seq
ATATCCTTTTTTTTCTTTTTAAATAAAAATAAAATAAAAATATAAAAAAAAATAAAAAAA
TTAAAAATGAACTATTTAAAACCAACAATATTTTTAATATTGTGTTTGGTCACATTTGTA
TATTCACAACCATCAACTTTAACAATTCAAGGAACAATTTTTGATCAACATCCAGATTAT
AATAACAATTTCGAACCAAAGGGAGGATCCATTAAAAAAAATTTAGTCTTAAAAACTCTT
GGAAGTAGCAAAGTACCAACTCTTGTTTCTTTAGATCCAGAGGATGATACAAATGAAGAT
GGTAGAATGATTACACCAAGCTTGTTCCAATACTTTTATCAAACATCATCAAAACCATTA
ACCAAAAATTCTGGTGCAAATGTCCCAATTCCAATTAACCTTGTCTTGAATTACGATTCC
AAAAAACAAGTTTATGTTTACAATGATCAATATTTTTTCCCAATTGATTACCAAGGATTT
GATGTTGATTCAAAATATAGAACTTATAATAATGGTTCAGGATATCATAATTTCCATTTT
TGTTTAAAATTGAATACTAAATTCACCTATCAAGNNNNNNNNNN

>VHA408Z.Seq
NNNNNNNNNNCAAATGTTCAGGTTGTATGACTTGTAATCCAGTTTCTGGTAATTGTGATT
TATCCGACACCGTTTGCCAAGATGGTAATGAATGTACTACCAATGTTTGTGAATCAAGTG
ATAGTGTCCTTGGTGTATGTACAAACTCAACAGTTGAATGCGGTGCTACCAACACTGATA
AATGTATCCAATTCTCTTGTAATGAAGCCACCGGTTGCCAACAATCAGCTGTCGTTTGTC
CAGATGTTGGTAGTTGTTTAGTTGGTTATTGTGATAGTAAACAAGGTTGTCTCACCAAAC
CAAGATCTTGCGATACTGGTGTTTTCTGTTTAACTGGTGAATGTATTGAAAATGCTGGTG
GTTGTATCGTCTATGAAAAACGTTGTGATGCTGATAATGGAAGATGTCAACAAGGTGTAT
GTGTAAATAATACCGCCACTGAAGAAGGTTATTGTAAATCTGAAGACTATGATCCATTAC
CATTCATTTGTAAAACTGGTGCTGTCGTTTCAACTGCTGTCATTGCTGGTGTCACTGTCG
CTGGTGCTGTTGCACTTGGTGTTTTCATTTATGGTGGTAAAAGAGGTTATGACTATTGGA
AAGAATCAAGAAATGTTCAATTCAGTGGTTCAAATTCTAATCCACTTTATGAACAAAATC
CAAATGGTTCTGGTGTAAATCCATTATATAATNATAATTCTGCATTATAAAATAAAATTA
CGTCTATATAAATCCTTATTTATTCGAAAT

>VHA408P.Seq
ATATCCTTTTTTTTCTTTTTAAATAAAAATAAAATAAAAATATAAAAAAAAATAAAAAAA
TTAAAAATGAACTATTTAAAACCAACAATATTTTTAATATTGTGTTTGGTCACATTTGTA
TATTCACAACCATCAACTTTAACAATTCAAGGAACAATTTTTGATCAACATCCAGATTAT
AATAACAATTTCGAACCAAAGGGAGGATCCATTAAAAAAAATTTAGTCTTAAAAACTCTT
GGAAGTAGCAAAGTACCAACTCTTGTTTCTTTAGATCCAGAGGATGATACAAATGAAGAT
GGTAGAATGATTACACCAAGCTTGTTCCAATACTTTTATCAAACATCATCAAAACCATTA
ACCAAAAATTCTGGTGCAAATGTCCCAATTCCAATTAACCTTGTCTTGAATTACGATTCC
AAAAAACAAGTTTATGTTTACAATGATCAATATTTTTTCCCAATTGATTACCAAGGATTT
GATGTTGATTCAAAATATAGAACTTATAATAATGGTTCAGGATATCATAATTTCCATTTT
TGTTTAAAATTGAATACTAAATTCACCTATCAAG----------CAAATGTTCAGGTTGT
ATGACTTGTAATCCAGTTTCTGGTAATTGTGATTTATCCGACACCGTTTGCCAAGATGGT
AATGAATGTACTACCAATGTTTGTGAATCAAGTGATAGTGTCCTTGGTGTATGTACAAAC
TCAACAGTTGAATGCGGTGCTACCAACACTGATAAATGTATCCAATTCTCTTGTAATGAA
GCCACCGGTTGCCAACAATCAGCTGTCGTTTGTCCAGATGTTGGTAGTTGTTTAGTTGGT
TATTGTGATAGTAAACAAGGTTGTCTCACCAAACCAAGATCTTGCGATACTGGTGTTTTC
TGTTTAACTGGTGAATGTATTGAAAATGCTGGTGGTTGTATCGTCTATGAAAAACGTTGT
GATGCTGATAATGGAAGATGTCAACAAGGTGTATGTGTAAATAATACCGCCACTGAAGAA
GGTTATTGTAAATCTGAAGACTATGATCCATTACCATTCATTTGTAAAACTGGTGCTGTC
GTTTCAACTGCTGTCATTGCTGGTGTCACTGTCGCTGGTGCTGTTGCACTTGGTGTTTTC
ATTTATGGTGGTAAAAGAGGTTATGACTATTGGAAAGAATCAAGAAATGTTCAATTCAGT
GGTTCAAATTCTAATCCACTTTATGAACAAAATCCAAATGGTTCTGGTGTAAATCCATTA
TATAATNATAATTCTGCATTATAAAATAAAATTACGTCTATATAAATCCTTATTTATTCG
AAAT