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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHA372
Library VH
(Link to library)
Clone ID VHA372
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15687-1
Original site URL
Representative seq. ID VHA372P
(Link to Original site)
Representative DNA sequence 
>VHA372 (VHA372Q) /CSM/VH/VHA3-C/VHA372Q.Seq.d/
GAACAACCCAATTTAGAAAATGGCCACATCCTATTCGGCTAATAATGGTCAAAATGAAGA
ATATACATTTGATGCATTTGAAGATGGTTCATCTAAATTGGTTGGAGAGCAACAATTAAC
TAAACTTAATCAATTTGCAGTTGATTATGCACAACAAATTTGGAAGATAGAAGAAGCATT
AGATGAAACATTAAATGAAGTATGGGATATAAATATAGATCCAGTTTCAATTTATAATAA
ACCTCATGAACAATTAGATTTAATTGAATTGGTTAAAACTGATCATAAAATTTTCAATAA
AGTAATATTAGTATTCTCTTCAATTTGTAATCAAACTAGAATTTTAAAAGAAACAGCAGA
AAGTAAATTTTATTCACCATTAACAGTATTTGGAGAGATTACAGGTGAATCATCAGAAGG
TGATGTACAAATTGAAGTTGGTAAATTATTACCATTTATGATTGATTTATCAGCATTTGT
AAATAGATGTTATTCATTAATTAGAAATATTATTAGTCAATTTGCATCGATCTATCAATC
ACAAAAGAATATACATACACAATTCTTTAAGAATGTTCATTTACAAGCTGTCTATTATTC
AATGATTGATATATTTTCAGTATTAATAAATTTAGATAGTATAATXXXXXXXXXXCCGAG
ACTGGTTTAACCTTTTTAGATCATTTTAGACTTTTAATCACTCATATTGGTAATGCTATG
GGTTATATTAGATTGGTCAGATCCGGTGGTTTACACTATTGTAGTAATGCTATCAAATTC
GTACCAGACTTGAAAAAGATTCCAAAATTCCAAGATTTAACCTCAAAAGATGCCCTCTCA
CCTGAAACAATTCAAGCTAGTACTAATTTGGATTCAATCATTCATAATCTTTCAAATAAT
TTATCAGAGGGTACTGAATACTTTAAGATGTTGGTAAACGTTTTCGCTACAGAGTTTCGA
AATATCGCTAATCAACATTTAAAGAATTTCTATATCATCGTACCTGCCTTGGCCTCAAAT
TACATCGATCATATGATCAATAGTAAAGATAAACTCTTTAAGAAATCAAAAGCAATCGGT
GCTGAAGCTTTATTANTCAATGATGATGGCTTTGCAATTGGTTTGGCTTATATCTTAAAA
TTATTAGATCAAAATAAAGATTTCGATTCTCTTCATTGGTTCGATCGTATTCAATTGAAA
TGTGAAACTGATCAAAAGAGAATGTTGGCTGAAGCAAATGCAAAAGGTATCAAAGAGGAT
CAAAATCATTTAGCAATTAAAAAGATTCAAAATTTCCAACAAGAATATGAATTATTTAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
nnpi*KMATSYSANNGQNEEYTFDAFEDGSSKLVGEQQLTKLNQFAVDYAQQIWKIEEAL
DETLNEVWDINIDPVSIYNKPHEQLDLIELVKTDHKIFNKVILVFSSICNQTRILKETAE
SKFYSPLTVFGEITGESSEGDVQIEVGKLLPFMIDLSAFVNRCYSLIRNIISQFASIYQS
QKNIHTQFFKNVHLQAVYYSMIDIFSVLINLDSI---

---ETGLTFLDHFRLLITHIGNAMGYIRLVRSGGLHYCSNAIKFVPDLKKIPKFQDLTSK
DALSPETIQASTNLDSIIHNLSNNLSEGTEYFKMLVNVFATEFRNIANQHLKNFYIIVPA
LASNYIDHMINSKDKLFKKSKAIGAEALLXNDDGFAIGLAYILKLLDQNKDFDSLHWFDR
IQLKCETDQKRMLAEANAKGIKEDQNHLAIKKIQNFQQEYELFK
Translated Amino Acid sequence (All Frames) 
Frame A:
eqpnlenghilfg**wsk*riyi*ci*rwfi*igwratin*t*sics*lcttnledrrsi
r*nik*smgykyrssfnl**ts*tirfn*ig*n*s*nfq*snisilfnl*sn*nfkrnsr
k*ilftinsiwrdyr*iirr*ctn*sw*iitiyd*fisick*mlfin*kyy*sicidlsi
tkeytytil*ecsftscllfnd*yifsinkfr*yn---

---prlv*pf*iildf*slilvmlwvildwsdpvvytivvmlsnsyqt*krfqnski*pq
kmpshlkqfklvliwiqsfiifqiiyqrvlntlrcw*tfslqsfeislini*risissyl
pwpqitsii*sivkinslrnqkqsvlklyxsmmmalqlvwlis*ny*ikikisilfigsi
vfn*nvklikrecwlkqmqkvskrikii*qlkrfkisnknmnyl

Frame B:
nnpi*KMATSYSANNGQNEEYTFDAFEDGSSKLVGEQQLTKLNQFAVDYAQQIWKIEEAL
DETLNEVWDINIDPVSIYNKPHEQLDLIELVKTDHKIFNKVILVFSSICNQTRILKETAE
SKFYSPLTVFGEITGESSEGDVQIEVGKLLPFMIDLSAFVNRCYSLIRNIISQFASIYQS
QKNIHTQFFKNVHLQAVYYSMIDIFSVLINLDSI---

---rdwfnlfrsf*tfnhsyw*cygly*igqirwftll**cyqirtrlekdskiprfnlk
rcplt*nnss*y*fgfnhs*sfk*firgy*il*dvgkrfryrvskyr*stfkeflyhrtc
lglklhrsydq**r*tl*eiksnrc*sfixq**wlcnwfglylkiirsk*rfrfsslvrs
ysiem*n*skenvg*skckryqrgsksfsn*kdskfptri*ii*

Frame C:
ttqfrkwphpirlimvkmknihlmhlkmvhlnwlesnn*lnlinlqlimhnkfgr*kkh*
mkh*mkygi*i*iqfqfiinlmnn*i*lnwlkliikfsik*y*yslqfviklef*kkqqk
vnfihh*qylerlqvnhqkvmyklklvnyyhl*liyqhl*idvih*leillvnlhrsinh
kriyihnslrmfiyklsiiq*liyfqy**i*iv*---

---ETGLTFLDHFRLLITHIGNAMGYIRLVRSGGLHYCSNAIKFVPDLKKIPKFQDLTSK
DALSPETIQASTNLDSIIHNLSNNLSEGTEYFKMLVNVFATEFRNIANQHLKNFYIIVPA
LASNYIDHMINSKDKLFKKSKAIGAEALLXNDDGFAIGLAYILKLLDQNKDFDSLHWFDR
IQLKCETDQKRMLAEANAKGIKEDQNHLAIKKIQNFQQEYELFK
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHA372 (VHA372Q) /CSM/VH/VHA3-C/VHA372Q.Seq.d/                       2551   0.0
VHK538 (VHK538Q) /CSM/VH/VHK5-B/VHK538Q.Seq.d/                       1296   0.0
VHB619 (VHB619Q) /CSM/VH/VHB6-A/VHB619Q.Seq.d/                       1296   0.0
VHB189 (VHB189Q) /CSM/VH/VHB1-D/VHB189Q.Seq.d/                       1296   0.0
SHL542 (SHL542Q) /CSM/SH/SHL5-B/SHL542Q.Seq.d/                       1296   0.0
SHD893 (SHD893Q) /CSM/SH/SHD8-D/SHD893Q.Seq.d/                       1296   0.0
SHD671 (SHD671Q) /CSM/SH/SHD6-C/SHD671Q.Seq.d/                       1296   0.0
SHC138 (SHC138Q) /CSM/SH/SHC1-B/SHC138Q.Seq.d/                       1296   0.0
CHG465 (CHG465Q) /CSM/CH/CHG4-C/CHG465Q.Seq.d/                       1296   0.0
CHG147 (CHG147Q) /CSM/CH/CHG1-B/CHG147Q.Seq.d/                       1296   0.0
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF063866|AF063866.1 Melanoplus sanguinipes entomopoxvirus, complete genome.    34   0.021  13
CP000123|CP000123.1 Mycoplasma capricolum subsp. capricolum ATCC 27343, complete genome.    42   0.047  20
BB822673|BB822673.1 Mus musculus mammary gland RCB-0526 Jyg-MC(A) cDNA, RIKEN full-length enriched library, clone:G830022O04, 3' end partial sequence.    32   0.12   4
CP000263|CP000263.1 Buchnera aphidicola str. Cc (Cinara cedri), complete genome.    36   0.15   14
CR103667|CR103667.1 Forward strand read from insert in 3'HPRT insertion targeting and chromosome engineering clone MHPP142o16.    50   0.16   1
CR044130|CR044130.1 Forward strand read from insert in 3'HPRT insertion targeting and chromosome engineering clone MHPP186g09.    50   0.16   1
CR034434|CR034434.1 Forward strand read from insert in 3'HPRT insertion targeting and chromosome engineering clone MHPP47e19.    50   0.16   1
CR023465|CR023465.1 Forward strand read from insert in 3'HPRT insertion targeting and chromosome engineering clone MHPP421e10.    50   0.16   1
CR017539|CR017539.1 Forward strand read from insert in 3'HPRT insertion targeting and chromosome engineering clone MHPP47e19.    50   0.16   1
BX990136|BX990136.1 Forward strand read from insert in 3'HPRT insertion targeting and chromosome engineering clone MHPP414o21.    50   0.16   1
dna update 2007. 3.15
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54R74) RecName: Full=UPF0681 protein;                               439   e-121
AB028956_1(AB028956|pid:none) Homo sapiens mRNA for KIAA1033 pro...   219   2e-55
BC143373_1(BC143373|pid:none) Homo sapiens KIAA1033, mRNA (cDNA ...   219   2e-55
BC040936_1(BC040936|pid:none) Homo sapiens KIAA1033, mRNA (cDNA ...   219   2e-55
BC020314_1(BC020314|pid:none) Mus musculus RIKEN cDNA A230046K03...   217   9e-55
(Q3UMB9) RecName: Full=UPF0681 protein KIAA1033;                      217   9e-55
AK161247_1(AK161247|pid:none) Mus musculus adult male testis cDN...   217   9e-55
AK145000_1(AK145000|pid:none) Mus musculus mammary gland RCB-052...   217   9e-55
BC110850_1(BC110850|pid:none) Homo sapiens KIAA1033, mRNA (cDNA ...   164   9e-39
AX882617_1(AX882617|pid:none) Sequence 17522 from Patent EP10746...   159   2e-37
protein update 2009. 6.26
PSORT 

 psg: 0.79  gvh: 0.25  alm: 0.38  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 40.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: plasma membrane

>> prediction for VHA372 is nuc
5' end seq. ID VHA372F
5' end seq. 
>VHA372F.Seq
GAACAACCCAATTTAGAAAATGGCCACATCCTATTCGGCTAATAATGGTCAAAATGAAGA
ATATACATTTGATGCATTTGAAGATGGTTCATCTAAATTGGTTGGAGAGCAACAATTAAC
TAAACTTAATCAATTTGCAGTTGATTATGCACAACAAATTTGGAAGATAGAAGAAGCATT
AGATGAAACATTAAATGAAGTATGGGATATAAATATAGATCCAGTTTCAATTTATAATAA
ACCTCATGAACAATTAGATTTAATTGAATTGGTTAAAACTGATCATAAAATTTTCAATAA
AGTAATATTAGTATTCTCTTCAATTTGTAATCAAACTAGAATTTTAAAAGAAACAGCAGA
AAGTAAATTTTATTCACCATTAACAGTATTTGGAGAGATTACAGGTGAATCATCAGAAGG
TGATGTACAAATTGAAGTTGGTAAATTATTACCATTTATGATTGATTTATCAGCATTTGT
AAATAGATGTTATTCATTAATTAGAAATATTATTAGTCAATTTGCATCGATCTATCAATC
ACAAAAGAATATACATACACAATTCTTTAAGAATGTTCATTTACAAGCTGTCTATTATTC
AATGATTGATATATTTTCAGTATTAATAAATTTAGATAGTATAATNNNNNNNNNN
Length of 5' end seq. 655
3' end seq. ID VHA372Z
3' end seq. 
>VHA372Z.Seq
NNNNNNNNNNCCGAGACTGGTTTAACCTTTTTAGATCATTTTAGACTTTTAATCACTCAT
ATTGGTAATGCTATGGGTTATATTAGATTGGTCAGATCCGGTGGTTTACACTATTGTAGT
AATGCTATCAAATTCGTACCAGACTTGAAAAAGATTCCAAAATTCCAAGATTTAACCTCA
AAAGATGCCCTCTCACCTGAAACAATTCAAGCTAGTACTAATTTGGATTCAATCATTCAT
AATCTTTCAAATAATTTATCAGAGGGTACTGAATACTTTAAGATGTTGGTAAACGTTTTC
GCTACAGAGTTTCGAAATATCGCTAATCAACATTTAAAGAATTTCTATATCATCGTACCT
GCCTTGGCCTCAAATTACATCGATCATATGATCAATAGTAAAGATAAACTCTTTAAGAAA
TCAAAAGCAATCGGTGCTGAAGCTTTATTANTCAATGATGATGGCTTTGCAATTGGTTTG
GCTTATATCTTAAAATTATTAGATCAAAATAAAGATTTCGATTCTCTTCATTGGTTCGAT
CGTATTCAATTGAAATGTGAAACTGATCAAAAGAGAATGTTGGCTGAAGCAAATGCAAAA
GGTATCAAAGAGGATCAAAATCATTTAGCAATTAAAAAGATTCAAAATTTCCAACAAGAA
TATGAATTATTTAAA
Length of 3' end seq. 675
Connected seq. ID VHA372P
Connected seq. 
>VHA372P.Seq
GAACAACCCAATTTAGAAAATGGCCACATCCTATTCGGCTAATAATGGTCAAAATGAAGA
ATATACATTTGATGCATTTGAAGATGGTTCATCTAAATTGGTTGGAGAGCAACAATTAAC
TAAACTTAATCAATTTGCAGTTGATTATGCACAACAAATTTGGAAGATAGAAGAAGCATT
AGATGAAACATTAAATGAAGTATGGGATATAAATATAGATCCAGTTTCAATTTATAATAA
ACCTCATGAACAATTAGATTTAATTGAATTGGTTAAAACTGATCATAAAATTTTCAATAA
AGTAATATTAGTATTCTCTTCAATTTGTAATCAAACTAGAATTTTAAAAGAAACAGCAGA
AAGTAAATTTTATTCACCATTAACAGTATTTGGAGAGATTACAGGTGAATCATCAGAAGG
TGATGTACAAATTGAAGTTGGTAAATTATTACCATTTATGATTGATTTATCAGCATTTGT
AAATAGATGTTATTCATTAATTAGAAATATTATTAGTCAATTTGCATCGATCTATCAATC
ACAAAAGAATATACATACACAATTCTTTAAGAATGTTCATTTACAAGCTGTCTATTATTC
AATGATTGATATATTTTCAGTATTAATAAATTTAGATAGTATAAT----------CCGAG
ACTGGTTTAACCTTTTTAGATCATTTTAGACTTTTAATCACTCATATTGGTAATGCTATG
GGTTATATTAGATTGGTCAGATCCGGTGGTTTACACTATTGTAGTAATGCTATCAAATTC
GTACCAGACTTGAAAAAGATTCCAAAATTCCAAGATTTAACCTCAAAAGATGCCCTCTCA
CCTGAAACAATTCAAGCTAGTACTAATTTGGATTCAATCATTCATAATCTTTCAAATAAT
TTATCAGAGGGTACTGAATACTTTAAGATGTTGGTAAACGTTTTCGCTACAGAGTTTCGA
AATATCGCTAATCAACATTTAAAGAATTTCTATATCATCGTACCTGCCTTGGCCTCAAAT
TACATCGATCATATGATCAATAGTAAAGATAAACTCTTTAAGAAATCAAAAGCAATCGGT
GCTGAAGCTTTATTANTCAATGATGATGGCTTTGCAATTGGTTTGGCTTATATCTTAAAA
TTATTAGATCAAAATAAAGATTTCGATTCTCTTCATTGGTTCGATCGTATTCAATTGAAA
TGTGAAACTGATCAAAAGAGAATGTTGGCTGAAGCAAATGCAAAAGGTATCAAAGAGGAT
CAAAATCATTTAGCAATTAAAAAGATTCAAAATTTCCAACAAGAATATGAATTATTTAAA
Length of connected seq. 1310
Full length Seq ID -
Full length Seq. -
Length of full length seq. -