VHA365
Library VH
(Link to library)
Clone ID VHA365
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16349-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>VHA365 (VHA365Q) /CSM/VH/VHA3-C/VHA365Q.Seq.d/
XXXXXXXXXXATGCAATTATTCGCTGGTATTAAAAGTATTTGCACAGAGATGGCAATGGA
TGGTTGTGAGAAATGTTCAGGAAATTCACCAACTACCACCTGTGATGTTTTGCCAGTTTA
CTCCTCCCTTTGTATGGCTATGCCTGATATGTCACAATGTGCCAATTGGACCAAGATGTG
TTCCTCCTCTGGTCAACTCTACAACTCTCAAATCACATCAGACTATTGTGTCGCCTCTGT
TGCTGACGTCGTTCCAACCATGAGAATGTACTTTCACACTGGTATCTTGGACTATATCCT
CTTTAAATCTTGGGTACCAAGAACTGACCGTCAATTTGCTGGTTCATGGTTT
sequence update 2002. 9.10
Translated Amino Acid sequence
---QLFAGIKSICTEMAMDGCEKCSGNSPTTTCDVLPVYSSLCMAMPDMSQCANWTKMCS
SSGQLYNSQITSDYCVASVADVVPTMRMYFHTGILDYILFKSWVPRTDRQFAGSWF


Translated Amino Acid sequence (All Frames)
Frame A:
---cnyslvlkvfaqrwqwmvvrnvqeihqlppvmfcqftppfvwlclichnvpigprcv
pplvnsttlkshqtivspllltsfqp*ectftlvswtisslnlgyqeltvnllvhg


Frame B:
---aiirwy*kylhrdgngwl*emfrkftnyhl*cfaslllplygya*yvtmcqldqdvf
llwstlqlsnhirllcrlcc*rrsnhenvlshwylglypl*ilgtkn*psicwfmv


Frame C:
---QLFAGIKSICTEMAMDGCEKCSGNSPTTTCDVLPVYSSLCMAMPDMSQCANWTKMCS
SSGQLYNSQITSDYCVASVADVVPTMRMYFHTGILDYILFKSWVPRTDRQFAGSWF


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHA365 (VHA365Q) /CSM/VH/VHA3-C/VHA365Q.Seq.d/ 678 0.0
VHQ291 (VHQ291Q) /CSM/VH/VHQ2-D/VHQ291Q.Seq.d/ 662 0.0
VHP801 (VHP801Q) /CSM/VH/VHP8-A/VHP801Q.Seq.d/ 662 0.0
VHP253 (VHP253Q) /CSM/VH/VHP2-C/VHP253Q.Seq.d/ 662 0.0
VHN890 (VHN890Q) /CSM/VH/VHN8-D/VHN890Q.Seq.d/ 662 0.0
VHM865 (VHM865Q) /CSM/VH/VHM8-C/VHM865Q.Seq.d/ 662 0.0
VHM772 (VHM772Q) /CSM/VH/VHM7-C/VHM772Q.Seq.d/ 662 0.0
VHM580 (VHM580Q) /CSM/VH/VHM5-D/VHM580Q.Seq.d/ 662 0.0
VHK521 (VHK521Q) /CSM/VH/VHK5-A/VHK521Q.Seq.d/ 662 0.0
VHE424 (VHE424Q) /CSM/VH/VHE4-A/VHE424Q.Seq.d/ 662 0.0

own update 2002.12.20
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AJ315489|AJ315489.1 Dictyostelium discoideum mRNA for p80 protein. 662 0.0 1
AC139711|AC139711.4 Mus musculus BAC clone RP23-362F21 from chromosome 19, complete sequence. 34 3.9 4
AC173877|AC173877.2 Bos taurus clone CH240-271I8, *** SEQUENCING IN PROGRESS ***, 32 unordered pieces. 42 9.8 1
AC018294|AC018294.1 Drosophila melanogaster, *** SEQUENCING IN PROGRESS ***, in ordered pieces. 42 9.8 1
EK405499|EK405499.1 1095500040163 Global-Ocean-Sampling_GS-31-01-01-1P3-1P8KB marine metagenome genomic clone 1061005872399 5', genomic survey sequence. 42 9.8 1
EJ437278|EJ437278.1 1093015287044 Global-Ocean-Sampling_GS-28-01-01-1P6-2P0KB marine metagenome genomic clone 1061002338148 5', genomic survey sequence. 42 9.8 1
EJ361604|EJ361604.1 1092963689121 Global-Ocean-Sampling_GS-28-01-01-1P6-2P0KB marine metagenome genomic clone 1061002379289 3', genomic survey sequence. 42 9.8 1
CT355364|CT355364.1 Sus scrofa genomic clone CH242-382D16, genomic survey sequence. 42 9.8 1
CC475314|CC475314.1 CH240_300J19.TARBAC13P2 CHORI-240 Bos taurus genomic clone CH240_300J19, genomic survey sequence. 42 9.8 1
AE014297|AE014297.2 Drosophila melanogaster chromosome 3R, complete sequence. 42 9.8 1
dna update 2007. 3.15
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q7YXD4) RecName: Full=Protein P80; AltName: Full=Endosomal memb... 241 6e-63
DQ646486_1(DQ646486|pid:none) Chlamydomonas reinhardtii transmem... 56 4e-07
CP000569_174(CP000569|pid:none) Actinobacillus pleuropneumoniae ... 32 8.9
(Q7ZXL5) RecName: Full=Protein kinase C-binding protein NELL2; A... 32 8.9
BX901933_2(BX901933|pid:none) Zebrafish DNA sequence from clone ... 32 8.9

protein update 2009. 2.22
PSORT

psg: 0.83 gvh: 0.49 alm: 0.45 top: 0.53 tms: 0.00 mit: 0.17 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: cytoplasmic
24.0 %: nuclear
8.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: Golgi
4.0 %: vacuolar
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for VHA365 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VHA365Z
3' end seq.
>VHA365Z.Seq
NNNNNNNNNNATGCAATTATTCGCTGGTATTAAAAGTATTTGCACAGAGATGGCAATGGA
TGGTTGTGAGAAATGTTCAGGAAATTCACCAACTACCACCTGTGATGTTTTGCCAGTTTA
CTCCTCCCTTTGTATGGCTATGCCTGATATGTCACAATGTGCCAATTGGACCAAGATGTG
TTCCTCCTCTGGTCAACTCTACAACTCTCAAATCACATCAGACTATTGTGTCGCCTCTGT
TGCTGACGTCGTTCCAACCATGAGAATGTACTTTCACACTGGTATCTTGGACTATATCCT
CTTTAAATCTTGGGTACCAAGAACTGACCGTCAATTTGCTGGTTCATGGTTT
Length of 3' end seq. 352
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -