VHA356
Library VH
(Link to library)
Clone ID VHA356
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16441-1
Original site URL
Representative seq. ID VHA356P
(Link to Original site)
Representative DNA sequence
>VHA356 (VHA356Q) /CSM/VH/VHA3-C/VHA356Q.Seq.d/
CACTGTTGGCCTACTGGTAATATTATGGTTGTAAATTTCCCATCTTATGGAAAAACCCAA
ATTTCAGTATCAAATGATGCAGGTCAAACATTTTCAACCTCAGCAGTTTTTCCACATAAA
GTTGTATCAGTTTCACCACATTTAGATATTGAGGGTTTAGTGATTGCACGTTCCGATAAT
TTCATTTTAATTAGTGAAGATTTTGGTTTAACATGGAACAATGCATCATCCAATGGTGAT
GTTTTATTCACACCAGGTGGTTCAAGCTTTCCAACCGACCCATTATGGGATCCATCAGAG
AAATCTGCAGTGTTTTTCGCAATTTTAGCATCAAAAACAGGATCAGGTGCATTTTCAGTT
TCAAAAGATATGGGTAAAACTTTCAAAACCTTAATCAATGGTGCCGTCGATATGATTTAC
ACCGACTATTACTACTATGTAGGTGTTATCGATGCATTAAAGGGTGGTAATAAACTTTAC
GTCAAATCTTTAATGAGTGTTGTAACTTCAACCATGGATGGTTTCCTTCTTTGTCAATTC
CCATTTGGTGAAGATGTTCAACCAAATGATTTCCGTATTCTTGATGATACATCGGGAGCA
ATTXXXXXXXXXXGGATCTTCAGNNCNATTGAATTGTNGTAAATCNNTTGCTTCCCAATA
TGTTCCAATCNGTNAAGANNATTGTACACCAGGTCANACCTATATCAANTCAAAAGGTTT
CAGAAGAGTCGNTGCCACNCAATGNGTAGGTGGNGNTAATGC
sequence update 2002.10.25
Translated Amino Acid sequence
HCWPTGNIMVVNFPSYGKTQISVSNDAGQTFSTSAVFPHKVVSVSPHLDIEGLVIARSDN
FILISEDFGLTWNNASSNGDVLFTPGGSSFPTDPLWDPSEKSAVFFAILASKTGSGAFSV
SKDMGKTFKTLINGAVDMIYTDYYYYVGVIDALKGGNKLYVKSLMSVVTSTMDGFLLCQF
PFGEDVQPNDFRILDDTSGAI---

---GSSXXLNCXKSXASQYVPIXXXXCTPGXTYIXSKGFRRVXATQXVGGXN


Translated Amino Acid sequence (All Frames)
Frame A:
HCWPTGNIMVVNFPSYGKTQISVSNDAGQTFSTSAVFPHKVVSVSPHLDIEGLVIARSDN
FILISEDFGLTWNNASSNGDVLFTPGGSSFPTDPLWDPSEKSAVFFAILASKTGSGAFSV
SKDMGKTFKTLINGAVDMIYTDYYYYVGVIDALKGGNKLYVKSLMSVVTSTMDGFLLCQF
PFGEDVQPNDFRILDDTSGAI---

---GSSXXLNCXKSXASQYVPIXXXXCTPGXTYIXSKGFRRVXATQXVGGXN

Frame B:
tvgllvilwl*ishlmekpkfqyqmmqvkhfqpqqffhiklyqfhhi*ilrv**lhvpii
sf*lvkilv*hgtmhhpmvmfyshqvvqafqpthygihqrnlqcfsqf*hqkqdqvhfqf
qkiwvklskp*smvpsi*ftptittm*vlsmh*rvvinftsnl**vl*lqpwmvsffvns
hlvkmfnqmisvflmihreq---

---dlqxx*ivvnxllpnmfqsvkxivhqvxpisxqkvseesxpxnx*vxxm

Frame C:
llayw*yygckfpilwknpnfsik*crsnifnlssfst*scisfttfry*gfsdctfr*f
hfn**rfwfnmeqciiqw*cfihtrwfklsnrpimgsireicsvfrnfsiknrircifsf
kryg*nfqnlnqwcrrydlhrllllcrcyrcikgw**tlrqifneccnfnhgwfpslsip
iw*rcstk*fpys**yigsn---

---ifxxielx*ixcfpicsnxxrxlytrsxlyqxkrfqksrchxmxrwx*c

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHA356 (VHA356Q) /CSM/VH/VHA3-C/VHA356Q.Seq.d/ 1350 0.0
VHH873 (VHH873Q) /CSM/VH/VHH8-D/VHH873Q.Seq.d/ 983 0.0
VHG645 (VHG645Q) /CSM/VH/VHG6-B/VHG645Q.Seq.d/ 977 0.0
CHP183 (CHP183Q) /CSM/CH/CHP1-D/CHP183Q.Seq.d/ 961 0.0
CHR715 (CHR715Q) /CSM/CH/CHR7-A/CHR715Q.Seq.d/ 821 0.0
VHA891 (VHA891Q) /CSM/VH/VHA8-D/VHA891Q.Seq.d/ 686 0.0
VHL306 (VHL306Q) /CSM/VH/VHL3-A/VHL306Q.Seq.d/ 684 0.0
CFB392 (CFB392Q) /CSM/CF/CFB3-D/CFB392Q.Seq.d/ 684 0.0
VHH854 (VHH854Q) /CSM/VH/VHH8-C/VHH854Q.Seq.d/ 682 0.0
VHB530 (VHB530Q) /CSM/VH/VHB5-B/VHB530Q.Seq.d/ 680 0.0

own update 2004.12.24
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

CJ434689|CJ434689.1 Macaca fascicularis mRNA, clone: QccE-11692, 5' end, expressed incerebellum cortex. 50 0.090 1
CJ470069|CJ470069.1 Macaca fascicularis mRNA, clone: QnpA-21575, 5' end, expressed in brain parietal lobe. 48 0.36 1
CJ443238|CJ443238.1 Macaca fascicularis mRNA, clone: QccE-20786, 5' end, expressed in cerebellum cortex. 48 0.36 1
CI031426|CI031426.1 Oryza sativa (japonica cultivar-group) cDNA, clone: 009-M087R-A03, 3'end. 48 0.36 1
AC164472|AC164472.2 Bos taurus clone CH240-152D3, *** SEQUENCING IN PROGRESS ***, 31 unordered pieces. 48 0.36 1
AC171253|AC171253.2 Bos taurus clone CH240-279F5, WORKING DRAFT SEQUENCE, 10 unordered pieces. 44 0.58 3
BD099922|BD099922.1 Novel genes cloned in humanneuroblastoma and fragments thereof. 44 0.89 2
BD019984|BD019984.1 Novel gene and novel gene fragment cloned in human neuroblastoma. 44 0.89 2
CR454251|CR454251.2 Normalized and Subtracted bovine embryonic and extraembryonic tissues (bcaz/BE03) clone bcaz0020.h.03, 5prim end (M13_NIA-R). 36 0.99 2
AC170698|AC170698.2 Bos taurus clone CH240-217E17, WORKING DRAFT SEQUENCE, 13 unordered pieces. 44 1.2 4
dna update 2007. 3.15
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AB308054_1(AB308054|pid:none) Phanerochaete chrysosporium xgh74B... 38 0.40
CP000473_3317(CP000473|pid:none) Solibacter usitatus Ellin6076, ... 38 0.40
CP000828_3290(CP000828|pid:none) Acaryochloris marina MBIC11017,... 36 1.5
EU636930_1(EU636930|pid:none) Simian rotavirus A strain RRV segm... 35 3.3
(Q8UZL8) RecName: Full=Non-structural protein 3; Short=... 35 3.3
AE014135_156(AE014135|pid:none) Drosophila melanogaster chromoso... 34 4.3
BT009987_1(BT009987|pid:none) Drosophila melanogaster RE51676 fu... 34 4.3
CP001177_3378(CP001177|pid:none) Bacillus cereus AH187, complete... 34 4.4
AE016877_3364(AE016877|pid:none) Bacillus cereus ATCC 14579, com... 34 4.4
CP000485_3011(CP000485|pid:none) Bacillus thuringiensis str. Al ... 34 5.7
protein update 2009. 6.26
PSORT

psg: 0.87 gvh: 0.42 alm: 0.39 top: 0.43 tms: 0.00 mit: 0.26 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

56.0 %: cytoplasmic
32.0 %: nuclear
4.0 %: mitochondrial
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for VHA356 is cyt

5' end seq. ID VHA356F
5' end seq.
>VHA356F.Seq
CACTGTTGGCCTACTGGTAATATTATGGTTGTAAATTTCCCATCTTATGGAAAAACCCAA
ATTTCAGTATCAAATGATGCAGGTCAAACATTTTCAACCTCAGCAGTTTTTCCACATAAA
GTTGTATCAGTTTCACCACATTTAGATATTGAGGGTTTAGTGATTGCACGTTCCGATAAT
TTCATTTTAATTAGTGAAGATTTTGGTTTAACATGGAACAATGCATCATCCAATGGTGAT
GTTTTATTCACACCAGGTGGTTCAAGCTTTCCAACCGACCCATTATGGGATCCATCAGAG
AAATCTGCAGTGTTTTTCGCAATTTTAGCATCAAAAACAGGATCAGGTGCATTTTCAGTT
TCAAAAGATATGGGTAAAACTTTCAAAACCTTAATCAATGGTGCCGTCGATATGATTTAC
ACCGACTATTACTACTATGTAGGTGTTATCGATGCATTAAAGGGTGGTAATAAACTTTAC
GTCAAATCTTTAATGAGTGTTGTAACTTCAACCATGGATGGTTTCCTTCTTTGTCAATTC
CCATTTGGTGAAGATGTTCAACCAAATGATTTCCGTATTCTTGATGATACATCGGGAGCA
ATTNNNNNNNNNN
Length of 5' end seq. 613
3' end seq. ID VHA356Z
3' end seq.
>VHA356Z.Seq
NNNNNNNNNNGGATCTTCAGNNCNATTGAATTGTNGTAAATCNNTTGCTTCCCAATATGT
TCCAATCNGTNAAGANNATTGTACACCAGGTCANACCTATATCAANTCAAAAGGTTTCAG
AAGAGTCGNTGCCACNCAATGNGTAGGTGGNGNTAATGC
Length of 3' end seq. 159
Connected seq. ID VHA356P
Connected seq.
>VHA356P.Seq
CACTGTTGGCCTACTGGTAATATTATGGTTGTAAATTTCCCATCTTATGGAAAAACCCAA
ATTTCAGTATCAAATGATGCAGGTCAAACATTTTCAACCTCAGCAGTTTTTCCACATAAA
GTTGTATCAGTTTCACCACATTTAGATATTGAGGGTTTAGTGATTGCACGTTCCGATAAT
TTCATTTTAATTAGTGAAGATTTTGGTTTAACATGGAACAATGCATCATCCAATGGTGAT
GTTTTATTCACACCAGGTGGTTCAAGCTTTCCAACCGACCCATTATGGGATCCATCAGAG
AAATCTGCAGTGTTTTTCGCAATTTTAGCATCAAAAACAGGATCAGGTGCATTTTCAGTT
TCAAAAGATATGGGTAAAACTTTCAAAACCTTAATCAATGGTGCCGTCGATATGATTTAC
ACCGACTATTACTACTATGTAGGTGTTATCGATGCATTAAAGGGTGGTAATAAACTTTAC
GTCAAATCTTTAATGAGTGTTGTAACTTCAACCATGGATGGTTTCCTTCTTTGTCAATTC
CCATTTGGTGAAGATGTTCAACCAAATGATTTCCGTATTCTTGATGATACATCGGGAGCA
ATT----------GGATCTTCAGNNCNATTGAATTGTNGTAAATCNNTTGCTTCCCAATA
TGTTCCAATCNGTNAAGANNATTGTACACCAGGTCANACCTATATCAANTCAAAAGGTTT
CAGAAGAGTCGNTGCCACNCAATGNGTAGGTGGNGNTAATGC
Length of connected seq. 752
Full length Seq ID -
Full length Seq. -
Length of full length seq. -