>VHA340 (VHA340Q) /CSM/VH/VHA3-B/VHA340Q.Seq.d/
XXXXXXXXXXTAATCCAAATGCAACTCTTCATTCAAATAACACTTTTATAATTTCAAATA
GTAGTGTACAAGGTAGTGGTGTAATTAATTCATCAATTTCATCAAATGGTGGATCAAGTT
ATGGTAACGATACAATCACAAACTTGGATATTAATGGTAATTTAGAATCAAATGAAGATG
AATTTATATTTACATTGGATGGTAAAAACTCTACAACTATTAATATTGGTAATAATGCAA
CCATTACAAATGCTACTTTAATCATTAGAGTTAGTAATGATATTGTAAATTCAACCCAAA
ATACAACATTGGTAACAAGTTCAAATTTGGATGCAACCTTTTCAAAAATTGTTTTTCAAT
CATATGATCCAGAAACTGGAATTCAAAAACAATTGGATGATTGTGCTCATAAAATTAAAA
ATGATAAAGGTACTCTTGGATTATTATTAAATTCAAATGCTAAACAATGTGTAATAGTTT
CCACTACAAGTAGTGGTACAGGTGGTGGCACAGGTGGTGGTACAGGTGGTAGTACAGGTG
GTGGTACAAGTGGTAGTACAGGTGGAGGTACAGGTGGTACAGGTGGAGGTACAGGCCAAA
CTGTTGTGGTTGTTGAAGAAGATCAAAAGAGCTCATTAAGTGCTGGTGCAATTGCTGGTA
TTATTGTAGGTAT

---NPNATLHSNNTFIISNSSVQGSGVINSSISSNGGSSYGNDTITNLDINGNLESNEDE
FIFTLDGKNSTTINIGNNATITNATLIIRVSNDIVNSTQNTTLVTSSNLDATFSKIVFQS
YDPETGIQKQLDDCAHKIKNDKGTLGLLLNSNAKQCVIVSTTSSGTGGGTGGGTGGSTGG
GTSGSTGGGTGGTGGGTGQTVVVVEEDQKSSLSAGAIAGIIVG

Frame A:
---NPNATLHSNNTFIISNSSVQGSGVINSSISSNGGSSYGNDTITNLDINGNLESNEDE
FIFTLDGKNSTTINIGNNATITNATLIIRVSNDIVNSTQNTTLVTSSNLDATFSKIVFQS
YDPETGIQKQLDDCAHKIKNDKGTLGLLLNSNAKQCVIVSTTSSGTGGGTGGGTGGSTGG
GTSGSTGGGTGGTGGGTGQTVVVVEEDQKSSLSAGAIAGIIVG


Frame B:
---iqmqlfiqitll*fqivvykvvv*lihqfhqmvdqvmvtiqsqtwilmvi*nqmkmn
lylhwmvktlqllilvimqplqmll*slelvmil*iqpkiqhw*qvqiwmqpfqklffnh
miqklefknnwmivliklkmikvlldyy*iqmlnnv**fplqvvvqvvaqvvvqvvvqvv
vqvvvqvevqvvqvevqakllwllkkikrah*vlvqllvll*v


Frame C:
---skcnssfk*hfynfk**ctr*wcn*finfikwwiklw*rynhklgy*w*frik*r*i
yiyigw*klyny*yw**cnhykcyfnh*s***yckfnpkynignkfkfgcnlfkncfsii
*srnwnsktig*lcs*n*k**ryswiiikfkc*tmcnsfhyk*wyrwwhrwwyrw*yrww
ykw*yrwryrwyrwryrpnccgc*rrskelikcwcncwyycry

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHH521 (VHH521Q) /CSM/VH/VHH5-A/VHH521Q.Seq.d/                        955   0.0
VHA340 (VHA340Q) /CSM/VH/VHA3-B/VHA340Q.Seq.d/                        955   0.0
VHC580 (VHC580Q) /CSM/VH/VHC5-D/VHC580Q.Seq.d/                        952   0.0
VHH794 (VHH794Q) /CSM/VH/VHH7-D/VHH794Q.Seq.d/                        950   0.0
VHD329 (VHD329Q) /CSM/VH/VHD3-B/VHD329Q.Seq.d/                        948   0.0
VHE339 (VHE339Q) /CSM/VH/VHE3-B/VHE339Q.Seq.d/                        946   0.0
VHJ262 (VHJ262Q) /CSM/VH/VHJ2-C/VHJ262Q.Seq.d/                        936   0.0
VHH520 (VHH520Q) /CSM/VH/VHH5-A/VHH520Q.Seq.d/                        936   0.0
VHK596 (VHK596Q) /CSM/VH/VHK5-D/VHK596Q.Seq.d/                        910   0.0
VHL427 (VHL427Q) /CSM/VH/VHL4-B/VHL427Q.Seq.d/                        894   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC115598|AC115598.2 Dictyostelium discoideum chromosome 2 map 581427-735498 strain AX4, complete sequence.    32   0.002  9
AZ682951|AZ682951.1 ENTHL32TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    54   0.005  1
AZ541475|AZ541475.1 ENTGK77TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    54   0.005  1
AC147950|AC147950.2 Papio anubis clone RP41-263L16, WORKING DRAFT SEQUENCE, 3 ordered pieces.    38   0.014  7
AM479829|AM479829.1 Vitis vinifera, whole genome shotgun sequence, contig  VV78X007751.19, clone ENTAV 115.    42   0.18   5
AZ679768|AZ679768.1 ENTJB51TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    38   0.23   2
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    48   0.31   1
AL389914|AL389914.3 Human chromosome 14 DNA sequence BAC C-2307P3 of library CalTech-D  from chromosome 14 of Homo sapiens (Human).    38   0.48   4
AC124970|AC124970.21 Medicago truncatula clone mth2-7j19, complete sequence.    38   0.58   5
DU356160|DU356160.1 1098312053302 CHORI-243 Ovis aries genomic clone CH243-31D22, genomic survey sequence.    38   0.65   2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000647_1382(CP000647|pid:none) Klebsiella pneumoniae subsp. pn...    34   3.5
CP000568_3082(CP000568|pid:none) Clostridium thermocellum ATCC 2...    34   4.5
AY698035_1(AY698035|pid:none) Desmognathus marmoratus isolate 69...    33   5.9
AC116957_68(AC116957|pid:none) Dictyostelium discoideum chromoso...    33   7.6
AY612344_1(AY612344|pid:none) Desmognathus marmoratus voucher KH...    33   7.7

 psg: 0.85  gvh: 0.39  alm: 0.46  top: 0.47  tms: 0.00  mit: 0.31  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 28.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane
	  4.0 %: peroxisomal
	  4.0 %: endoplasmic reticulum

>> prediction for VHA340 is cyt

>VHA340Z.Seq
NNNNNNNNNNTAATCCAAATGCAACTCTTCATTCAAATAACACTTTTATAATTTCAAATA
GTAGTGTACAAGGTAGTGGTGTAATTAATTCATCAATTTCATCAAATGGTGGATCAAGTT
ATGGTAACGATACAATCACAAACTTGGATATTAATGGTAATTTAGAATCAAATGAAGATG
AATTTATATTTACATTGGATGGTAAAAACTCTACAACTATTAATATTGGTAATAATGCAA
CCATTACAAATGCTACTTTAATCATTAGAGTTAGTAATGATATTGTAAATTCAACCCAAA
ATACAACATTGGTAACAAGTTCAAATTTGGATGCAACCTTTTCAAAAATTGTTTTTCAAT
CATATGATCCAGAAACTGGAATTCAAAAACAATTGGATGATTGTGCTCATAAAATTAAAA
ATGATAAAGGTACTCTTGGATTATTATTAAATTCAAATGCTAAACAATGTGTAATAGTTT
CCACTACAAGTAGTGGTACAGGTGGTGGCACAGGTGGTGGTACAGGTGGTAGTACAGGTG
GTGGTACAAGTGGTAGTACAGGTGGAGGTACAGGTGGTACAGGTGGAGGTACAGGCCAAA
CTGTTGTGGTTGTTGAAGAAGATCAAAAGAGCTCATTAAGTGCTGGTGCAATTGCTGGTA
TTATTGTAGGTAT