>VHA335 (VHA335Q) /CSM/VH/VHA3-B/VHA335Q.Seq.d/
AATCTCTACCATACCTTTCAATCGTTTATTCATCCCTTATCAAAAACACACACACACACA
TATATATATAAAATTAATTTATTACTTTTTATTTGTCATAAAAAAAAAAAAAATANCAAT
AATAATAATANTTTTTTAAAAATAAAAAANTAAAAAAATAAAANCAANTTAAAAAATAAT
TTAANAATAANAATTTTTCNTTTNTAAAGAAGACAANCAANTAAAAAAAATAAAATAATA
AATAAANTTTAAAAAAAAAAXXXXXXXXXXCTGGTGATGTCGGTCATATCGATAAGGATG
GTTTCATTTTCATCACCGATAGAAAGAAAGAGTTAATCATTACAGCAGGTGGTGAAAATA
TTTCACCAACCTTGATTGAAGGTTTCATTCGTCAAATCATTGGTGTTGAACAAGCCGTAG
TAATTGGTGATCGTCAAAAATATTTAGTTGCTTTGGTCACTGTCAATGCTGATTTATTCA
AGTTATTACCAGGTCAAGGTTACACTCATCCATTACCAAAATCAATGGAAGAAGCTTCAA
CAGATAAACATTTCATTGCCTATATTGATTCTCAAATGAAAGATATTAATTCAAAACTTC
CAAATGTTTCAACAATTAAAAAAGTTAAAATTTTACCAGTTGAATTCCAAGAAACTGGTG
AAACTTCTGAATTAACTCCAACTAAAAAATTAAAA

istipfnrlfipyqkhththiyikliyyflfvikkkkixiiiixf*k*kxkkikxx*kii
*x*xffxxkedxqxkkik**IXFKKK---

---GDVGHIDKDGFIFITDRKKELIITAGGENISPTLIEGFIRQIIGVEQAVVIGDRQKY
LVALVTVNADLFKLLPGQGYTHPLPKSMEEASTDKHFIAYIDSQMKDINSKLPNVSTIKK
VKILPVEFQETGETSELTPTKKLK

Frame A:
nlyhtfqsfihplskththtyiykinlllfichkkkknxnnnnxflkikx*knkxxlknn
lxixifxx*rrqxxkknkiinkx*kk---

---lvmsvisirmvsfsspierks*slqqvvkifhqp*lkvsfvkslvlnkp**lvivkn
i*llwslsmliyssyyqvkvtlihyqnqwkklqqinislpililk*kiliqnfqmfqqlk
klkfyqlnskklvklln*lqlkn*

Frame B:
istipfnrlfipyqkhththiyikliyyflfvikkkkixiiiixf*k*kxkkikxx*kii
*x*xffxxkedxqxkkik**IXFKKK---

---w*crsyr*gwfhfhhr*kervnhysrw*kyftnld*rfhssnhwc*tsrsnw*sski
fscfghcqc*fiqvitrsrlhssitkingrsfnr*tfhcly*fsnery*fktskcfnn*k
s*nfts*iprnw*nf*insn*kik

Frame C:
slpylsivyssliknththiyi*n*fitfyls*kkkkxq***xffknkkxkk*xqxkk*f
xnxnfsfxkktxx*kk*nnk*xlkkk---

---GDVGHIDKDGFIFITDRKKELIITAGGENISPTLIEGFIRQIIGVEQAVVIGDRQKY
LVALVTVNADLFKLLPGQGYTHPLPKSMEEASTDKHFIAYIDSQMKDINSKLPNVSTIKK
VKILPVEFQETGETSELTPTKKLK

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHA335 (VHA335Q) /CSM/VH/VHA3-B/VHA335Q.Seq.d/                        842   0.0
CHN456 (CHN456Q) /CSM/CH/CHN4-C/CHN456Q.Seq.d/                        842   0.0
AHD785 (AHD785Q) /CSM/AH/AHD7-D/AHD785Q.Seq.d/                        842   0.0
VHQ345 (VHQ345Q) /CSM/VH/VHQ3-B/VHQ345Q.Seq.d/                        837   0.0
CHG165 (CHG165Q) /CSM/CH/CHG1-C/CHG165Q.Seq.d/                        835   0.0
CHF547 (CHF547Q) /CSM/CH/CHF5-B/CHF547Q.Seq.d/                        833   0.0
AHM812 (AHM812Q) /CSM/AH/AHM8-A/AHM812Q.Seq.d/                        829   0.0
AHF157 (AHF157Q) /CSM/AH/AHF1-C/AHF157Q.Seq.d/                        829   0.0
VHB722 (VHB722Q) /CSM/VH/VHB7-A/VHB722Q.Seq.d/                        825   0.0
CHP847 (CHP847Q) /CSM/CH/CHP8-B/CHP847Q.Seq.d/                        819   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AM458057|AM458057.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X226249.7, clone ENTAV 115.    56   0.001  1
BX548045|BX548045.6 Zebrafish DNA sequence from clone DKEY-224A6 in linkage group 17.    46   0.003  2
BX927226|BX927226.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone  DKEY-6J23.    46   0.003  2
DV182098|DV182098.1 EST-161-5 Young leaves inoculated with powdery mildew pathogen (Uncinula necator) cDNA library of Chinese wild grape Vitis pseudoreticulata cDNA 5', mRNA sequence.    52   0.021  1
EJ970719|EJ970719.1 1093022079894 Global-Ocean-Sampling_GS-30-02-01-1P0-1P3KB marine metagenome genomic clone 1061002920862 5', genomic survey sequence.    52   0.021  1
EJ277446|EJ277446.1 1095366029905 Global-Ocean-Sampling_GS-27-01-01-1P8-2P0KB marine metagenome genomic clone 1061005468816 5', genomic survey sequence.    52   0.021  1
CT518011|CT518011.1 A BAC library has been constructed from cultivar Cabernet Sauvignon  using two different restriction enzymes : HindIII (clone prefix :  VCS1H) and EcoRI (clone prefix : VCS1E).    50   0.082  1
CT497858|CT497858.1 A BAC library has been constructed from cultivar Cabernet Sauvignon  using two different restriction enzymes : HindIII (clone prefix :  VCS1H) and EcoRI (clone prefix : VCS1E).    50   0.082  1
AM488596|AM488596.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X275768.5, clone ENTAV 115.    50   0.082  1
AM464424|AM464424.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X163662.5, clone ENTAV 115.    50   0.082  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AP011115_849(AP011115|pid:none) Rhodococcus opacus B4 DNA, compl...   110   3e-23
AE000516_2307(AE000516|pid:none) Mycobacterium tuberculosis CDC1...   110   5e-23
AM408590_2207(AM408590|pid:none) Mycobacterium bovis BCG Pasteur...   110   5e-23
BX842579_25(BX842579|pid:none) Mycobacterium tuberculosis H37Rv ...   110   5e-23
AL022602_30(AL022602|pid:none) Mycobacterium leprae cosmid B268.      108   1e-22
A87020(A87020) probable long-chain-fatty-acid-CoA ligase [import...   108   1e-22
CP000656_2943(CP000656|pid:none) Mycobacterium gilvum PYR-GCK, c...   106   8e-22
CP000480_4107(CP000480|pid:none) Mycobacterium smegmatis str. MC...   105   1e-21
AP008957_3586(AP008957|pid:none) Rhodococcus erythropolis PR4 DN...   103   5e-21
CP000431_5975(CP000431|pid:none) Rhodococcus jostii RHA1, comple...   103   5e-21

 psg: 0.52  gvh: 0.47  alm: 0.38  top: 0.53  tms: 0.00  mit: 0.16  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 28.0 %: nuclear
	 16.0 %: mitochondrial

>> prediction for VHA335 is cyt

>VHA335F.Seq
AATCTCTACCATACCTTTCAATCGTTTATTCATCCCTTATCAAAAACACACACACACACA
TATATATATAAAATTAATTTATTACTTTTTATTTGTCATAAAAAAAAAAAAAATANCAAT
AATAATAATANTTTTTTAAAAATAAAAAANTAAAAAAATAAAANCAANTTAAAAAATAAT
TTAANAATAANAATTTTTCNTTTNTAAAGAAGACAANCAANTAAAAAAAATAAAATAATA
AATAAANTTTAAAAAAAAAANNNNNNNNNN

>VHA335Z.Seq
NNNNNNNNNNCTGGTGATGTCGGTCATATCGATAAGGATGGTTTCATTTTCATCACCGAT
AGAAAGAAAGAGTTAATCATTACAGCAGGTGGTGAAAATATTTCACCAACCTTGATTGAA
GGTTTCATTCGTCAAATCATTGGTGTTGAACAAGCCGTAGTAATTGGTGATCGTCAAAAA
TATTTAGTTGCTTTGGTCACTGTCAATGCTGATTTATTCAAGTTATTACCAGGTCAAGGT
TACACTCATCCATTACCAAAATCAATGGAAGAAGCTTCAACAGATAAACATTTCATTGCC
TATATTGATTCTCAAATGAAAGATATTAATTCAAAACTTCCAAATGTTTCAACAATTAAA
AAAGTTAAAATTTTACCAGTTGAATTCCAAGAAACTGGTGAAACTTCTGAATTAACTCCA
ACTAAAAAATTAAAA

>VHA335P.Seq
AATCTCTACCATACCTTTCAATCGTTTATTCATCCCTTATCAAAAACACACACACACACA
TATATATATAAAATTAATTTATTACTTTTTATTTGTCATAAAAAAAAAAAAAATANCAAT
AATAATAATANTTTTTTAAAAATAAAAAANTAAAAAAATAAAANCAANTTAAAAAATAAT
TTAANAATAANAATTTTTCNTTTNTAAAGAAGACAANCAANTAAAAAAAATAAAATAATA
AATAAANTTTAAAAAAAAAA----------CTGGTGATGTCGGTCATATCGATAAGGATG
GTTTCATTTTCATCACCGATAGAAAGAAAGAGTTAATCATTACAGCAGGTGGTGAAAATA
TTTCACCAACCTTGATTGAAGGTTTCATTCGTCAAATCATTGGTGTTGAACAAGCCGTAG
TAATTGGTGATCGTCAAAAATATTTAGTTGCTTTGGTCACTGTCAATGCTGATTTATTCA
AGTTATTACCAGGTCAAGGTTACACTCATCCATTACCAAAATCAATGGAAGAAGCTTCAA
CAGATAAACATTTCATTGCCTATATTGATTCTCAAATGAAAGATATTAATTCAAAACTTC
CAAATGTTTCAACAATTAAAAAAGTTAAAATTTTACCAGTTGAATTCCAAGAAACTGGTG
AAACTTCTGAATTAACTCCAACTAAAAAATTAAAA