AFN381 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

AFN381
Library	AF (Link to library)
Clone ID	AFN381 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	-
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/AF/AFN3-D/AFN381Q.Seq.d/
Representative seq. ID	AFN381P (Link to Original site)
Representative DNA sequence	>AFN381 (AFN381Q) /CSM/AF/AFN3-D/AFN381Q.Seq.d/ ATTTATTCCATTACTATTATTATTATTATTATTATTATTATTATTATTATTATTATTTTT ATTATTATTTTTATTTTTATTTTTTATTATTATTATTATTTTTTTATTATTATTATTATT TATTCTTTAAAATTTTAAAAAATGACGGATCAAATAAAATTTACGCCATCTGGATATGCA AATTGGCCACAGAACAATCAACCAAAGATGACCAATGATCAAGCTATGTCCATTTTTAAA AATATTAAATGGGCAAATAAAATAGAATCTGTAGATGATTATTTTGAACTAATGAATCTT TCAAAAACTGATAAAAGAGTGAAAGAGGAAGATATAATCAAAGAATTTATATCATTATGT ATCATTAATAAAATTAGAATTAAAACATGTTCAAATAATGATACTGAAAATCAAAGAATT CGTATATTGGAAGAATCATTAAAAGATATTCAATTATTTTTGCAATCCGATTTCAAAAGC TATACACCAAAACCTGTTGAAATAATTGCAAAACAAACATCATATCAGACAAGCTCATCC CTATACACCAAAAAACTAACATCATCATCATCATCATCATCATCATCATCATCATCATCA TCATCTTTGGNAACAAAAAATGTAGXXXXXXXXXXAAAAAACTAACATCCATCATCATCA TCATCATCATCATCATCATCATCATCATCATCTTTGGAAACAAAAAATGTAGAATTGGAA ATCAAACACCAAAAATTGGAAAGGAAATACCAAGAATTGGAAAGGAAATACCAAGAATTG GAAAGTAAATACCAAGAATTGGAAACTGATAACAAAGAATTGGGATGTAAAAACCTAGAA TTAAAAATCAAAAACCAAGAATTGGGAATTAATAACAAAGAATTGGAAAATCAAAACCAA GAATTTGAAATCAAAATCCAAGAATTAGAAACCATAATCAATCAATACAAAAATGAAAAT AGTGCCAAAGATATGGAAATAATTGATATTAATAAAAAGAAAGAAGAACTTGTAAGAGCC ATAGAGAATGAGCTAGATGATATTAAAAAAAGGTATGTGGAACTTGAAAAGGTCAATAAA GAATCAAAAGAAAATTATGAAAAATCAATTTTTGGATTCCATGAAGCAAGAATTGAAGAA ATCAATAAATTAGTAATAAAATATAATGATTCACAAAAACAATTGGGAGAGGAAAAAATG AATGTAACCTTTTTAAAAAAAAAGATTGAAACATTAAAAAATGAAAATGAAAAATTATCA ACAAATTGTGATATCACCATCACCACCACTACAGCCACCATCATCAACATCTCTACCATC ACCACCAACTACTAATATAAATCAAAATGATTCNAAATTTAAAAATTTAAAAAATAAAAA ATAAATTAAATATCCCATT
sequence update	2009. 4. 3
Translated Amino Acid sequence	iysitiiiiiiiiiiiiiifiiifififyyyyyffiiiiiyslkfKMTDQIKFTPSGYA NWPQNNQPKMTNDQAMSIFKNIKWANKIESVDDYFELMNLSKTDKRVKEEDIIKEFISLC IINKIRIKTCSNNDTENQRIRILEESLKDIQLFLQSDFKSYTPKPVEIIAKQTSYQTSSS LYTKKLTSSSSSSSSSSSSSSSLXTKNV--- ---KKLTSIIIIIIIIIIIIIIFGNKKCRIGNQTPKIGKEIPRIGKEIPRIGKiprign *qrigmkpriknqkprign*qrigkskprinqnprirnhnqsiqkkcqrygnn* y*kerrtckshrearykkvcgtkgqrikrklkinfwipsknrnqisnki* ftktigrgknecnlfkkkdnikkkkiinklyhhhhhyshhhqhlyhhhqlliik mixnlki*kiknklnip
Translated Amino Acid sequence (All Frames)	Frame A: iysitiiiiiiiiiiiiiifiiifififyyyyyffiiiiiyslkfKMTDQIKFTPSGYA NWPQNNQPKMTNDQAMSIFKNIKWANKIESVDDYFELMNLSKTDKRVKEEDIIKEFISLC IINKIRIKTCSNNDTENQRIRILEESLKDIQLFLQSDFKSYTPKPVEIIAKQTSYQTSSS LYTKKLTSSSSSSSSSSSSSSSLXTKNV--- ---KKLTSIIIIIIIIIIIIIIFGNKKCRIGNQTPKIGKEIPRIGKEIPRIGKiprign *qrigmkpriknqkprign*qrigkskprinqnprirnhnqsiqkkcqrygnn* y*kerrtckshrearykkvcgtkgqrikrklkinfwipsknrnqisnki* ftktigrgknecnlfkkkdnikkkkiinklyhhhhhyshhhqhlyhhhqlliik mixnlkikiknklnip Frame B: fiplllllllllllllllflllflflffiiiiiflllllfilnfkkriknlrhldmq ighrtinqrpmiklcpflkilngqiknlmiilnifqklikekrkisknlyhyv sliklelkhvqimilkikefvywknhkifnyfcnpiskaihqnllklqnkhhirqahp ytpknhhhhhhhhhhhhhhhlwxqkm--- ---knhpssssssssssssssletknveleikhqklerkyqelerkyqeleskyqelet dnkelgcknlelkiknqelginnkelenqnqefeikiqeletiinqyknensakdmeiid inkkkeelvraienelddikkryvelekvnkeskenyeksifgfhearieeinklvikyn dsqkqlgeekmnvtflkkkietlkneneklstncditittttatiinistittnyyksk fxikfkkkinish Frame C: lfhyyyyyyyyyyyyyyyfyyyfyfyflllllffyyyyylffkilkndgsnkiyaiwick lateqstkddqssyvhfkymgknricrlftnesfknksergrynqriyiimy hnnnmfkyksknsyigriikrysiifairfqklytktcnncktniisdklip ihqktniiiiiiiiiiiiiiifgnkkc--- ---ktnihhhhhhhhhhhhhhlwkqkmnwksntknwkgntknwkgntknwkvntknwkl itknwdvktnksktknwelitknwkiktknlksksknkpsintkmkivpkiwkli likrkknleprmsmilkkgmwnlkrsiknqkkimknqfldsmkqelkksin**nim ihknnwerkkmpfkkrlkhkmkmknyqqivispspplqppsstslpsppttninqn dskfknlknkkikypi
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value AFN381 (AFN381Q) /CSM/AF/AFN3-D/AFN381Q.Seq.d/ 993 0.0 AFO389 (AFO389Q) /CSM/AF/AFO3-D/AFO389Q.Seq.d/ 837 0.0 AFL381 (AFL381Q) /CSM/AF/AFL3-D/AFL381Q.Seq.d/ 837 0.0 VHQ427 (VHQ427Q) /CSM/VH/VHQ4-B/VHQ427Q.Seq.d/ 46 0.001 AHR183 (AHR183Q) /CSM/AH/AHR1-D/AHR183Q.Seq.d/ 46 0.001 AHD560 (AHD560Q) /CSM/AH/AHD5-C/AHD560Q.Seq.d/ 42 0.023 SLC432 (SLC432Q) /CSM/SL/SLC4-B/SLC432Q.Seq.d/ 40 0.090 FC-BE23 (FC-BE23Q) /CSM/FC/FC-BE/FC-BE23Q.Seq.d/ 40 0.090 VSI720 (VSI720Q) /CSM/VS/VSI7-A/VSI720Q.Seq.d/ 38 0.35 VHM375 (VHM375Q) /CSM/VH/VHM3-D/VHM375Q.Seq.d/ 38 0.35
own update	2009. 4. 3
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N (BJ328318) Dictyostelium discoideum cDNA clone:dda23b21, 5' ... 785 0.0 3 (BJ328844) Dictyostelium discoideum cDNA clone:dda29b23, 5' ... 785 0.0 3 (BJ330213) Dictyostelium discoideum cDNA clone:dda27b21, 5' ... 785 0.0 2 (BJ347654) Dictyostelium discoideum cDNA clone:dda27b21, 3' ... 303 e-155 5 (EJ509666) 1095407058499 Global-Ocean-Sampling_GS-28-01-01-1... 38 0.017 3 (EJ314839) 1095403270231 Global-Ocean-Sampling_GS-27-01-01-1... 38 0.017 3 (EJ747293) 1092963009123 Global-Ocean-Sampling_GS-30-02-01-1... 52 0.059 1 (BH132245) ENTOC75TR Entamoeba histolytica Sheared DNA Entam... 50 0.23 1 (Z82608) R.prowazekii genomic DNA fragment (clone A34R). 50 0.23 1 (AM422018) Candidatus Phytoplasma australiense complete genome. 50 0.23 1
dna update	2009. 4.17
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value AF148805_82(AF148805\|pid:none) Human herpesvirus 8 type P isolat... 82 6e-14 AF192756_1(AF192756\|pid:none) Kaposi's sarcoma-associated herpes... 82 6e-14 U93872_83(U93872\|pid:none) Kaposi's sarcoma-associated herpesvir... 82 6e-14 AF360120_1(AF360120\|pid:none) Human herpesvirus 8 ORF73 gene, co... 82 6e-14 AF305694_1(AF305694\|pid:none) Kaposi's sarcoma-associated herpes... 81 7e-14 U52064_1(U52064\|pid:none) Kaposi's sarcoma-associated herpes-lik... 80 2e-13 AE015450_320(AE015450\|pid:none) Mycoplasma gallisepticum strain ... 75 5e-12 FM992691_276(FM992691\|pid:none) Candida dubliniensis CD36 chromo... 72 3e-11 AC116957_105(AC116957\|pid:none) Dictyostelium discoideum chromos... 69 4e-10 BC144320_1(BC144320\|pid:none) Homo sapiens cDNA clone MGC:177857... 68 7e-10
protein update	2009. 4. 6
PSORT	psg: 0.00 gvh: 0.00 alm: 0.00 top: 0.00 tms: 0.00 mit: 0.00 mip: 0.00 nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 0.00 100.0 %: >> prediction for AFN381 is
5' end seq. ID	AFN381F
5' end seq.	>AFN381F.Seq ATTTATTCCATTACTATTATTATTATTATTATTATTATTATTATTATTATTATTATTTTT ATTATTATTTTTATTTTTATTTTTTATTATTATTATTATTTTTTTATTATTATTATTATT TATTCTTTAAAATTTTAAAAAATGACGGATCAAATAAAATTTACGCCATCTGGATATGCA AATTGGCCACAGAACAATCAACCAAAGATGACCAATGATCAAGCTATGTCCATTTTTAAA AATATTAAATGGGCAAATAAAATAGAATCTGTAGATGATTATTTTGAACTAATGAATCTT TCAAAAACTGATAAAAGAGTGAAAGAGGAAGATATAATCAAAGAATTTATATCATTATGT ATCATTAATAAAATTAGAATTAAAACATGTTCAAATAATGATACTGAAAATCAAAGAATT CGTATATTGGAAGAATCATTAAAAGATATTCAATTATTTTTGCAATCCGATTTCAAAAGC TATACACCAAAACCTGTTGAAATAATTGCAAAACAAACATCATATCAGACAAGCTCATCC CTATACACCAAAAAACTAACATCATCATCATCATCATCATCATCATCATCATCATCATCA TCATCTTTGGNAACAAAAAATGTAGXXXXXXXXXX
Length of 5' end seq.	635
3' end seq. ID	AFN381Z
3' end seq.	>AFN381Z.Seq XXXXXXXXXXAAAAAACTAACATCCATCATCATCATCATCATCATCATCATCATCATCAT CATCATCTTTGGAAACAAAAAATGTAGAATTGGAAATCAAACACCAAAAATTGGAAAGGA AATACCAAGAATTGGAAAGGAAATACCAAGAATTGGAAAGTAAATACCAAGAATTGGAAA CTGATAACAAAGAATTGGGATGTAAAAACCTAGAATTAAAAATCAAAAACCAAGAATTGG GAATTAATAACAAAGAATTGGAAAATCAAAACCAAGAATTTGAAATCAAAATCCAAGAAT TAGAAACCATAATCAATCAATACAAAAATGAAAATAGTGCCAAAGATATGGAAATAATTG ATATTAATAAAAAGAAAGAAGAACTTGTAAGAGCCATAGAGAATGAGCTAGATGATATTA AAAAAAGGTATGTGGAACTTGAAAAGGTCAATAAAGAATCAAAAGAAAATTATGAAAAAT CAATTTTTGGATTCCATGAAGCAAGAATTGAAGAAATCAATAAATTAGTAATAAAATATA ATGATTCACAAAAACAATTGGGAGAGGAAAAAATGAATGTAACCTTTTTAAAAAAAAAGA TTGAAACATTAAAAAATGAAAATGAAAAATTATCAACAAATTGTGATATCACCATCACCA CCACTACAGCCACCATCATCAACATCTCTACCATCACCACCAACTACTAATATAAATCAA AATGATTCNAAATTTAAAAATTTAAAAAATAAAAAATAAATTAAATATCCCATT
Length of 3' end seq.	774
Connected seq. ID	AFN381P
Connected seq.	>AFN381P.Seq ATTTATTCCATTACTATTATTATTATTATTATTATTATTATTATTATTATTATTATTTTT ATTATTATTTTTATTTTTATTTTTTATTATTATTATTATTTTTTTATTATTATTATTATT TATTCTTTAAAATTTTAAAAAATGACGGATCAAATAAAATTTACGCCATCTGGATATGCA AATTGGCCACAGAACAATCAACCAAAGATGACCAATGATCAAGCTATGTCCATTTTTAAA AATATTAAATGGGCAAATAAAATAGAATCTGTAGATGATTATTTTGAACTAATGAATCTT TCAAAAACTGATAAAAGAGTGAAAGAGGAAGATATAATCAAAGAATTTATATCATTATGT ATCATTAATAAAATTAGAATTAAAACATGTTCAAATAATGATACTGAAAATCAAAGAATT CGTATATTGGAAGAATCATTAAAAGATATTCAATTATTTTTGCAATCCGATTTCAAAAGC TATACACCAAAACCTGTTGAAATAATTGCAAAACAAACATCATATCAGACAAGCTCATCC CTATACACCAAAAAACTAACATCATCATCATCATCATCATCATCATCATCATCATCATCA TCATCTTTGGNAACAAAAAATGTAG----------AAAAAACTAACATCCATCATCATCA TCATCATCATCATCATCATCATCATCATCATCTTTGGAAACAAAAAATGTAGAATTGGAA ATCAAACACCAAAAATTGGAAAGGAAATACCAAGAATTGGAAAGGAAATACCAAGAATTG GAAAGTAAATACCAAGAATTGGAAACTGATAACAAAGAATTGGGATGTAAAAACCTAGAA TTAAAAATCAAAAACCAAGAATTGGGAATTAATAACAAAGAATTGGAAAATCAAAACCAA GAATTTGAAATCAAAATCCAAGAATTAGAAACCATAATCAATCAATACAAAAATGAAAAT AGTGCCAAAGATATGGAAATAATTGATATTAATAAAAAGAAAGAAGAACTTGTAAGAGCC ATAGAGAATGAGCTAGATGATATTAAAAAAAGGTATGTGGAACTTGAAAAGGTCAATAAA GAATCAAAAGAAAATTATGAAAAATCAATTTTTGGATTCCATGAAGCAAGAATTGAAGAA ATCAATAAATTAGTAATAAAATATAATGATTCACAAAAACAATTGGGAGAGGAAAAAATG AATGTAACCTTTTTAAAAAAAAAGATTGAAACATTAAAAAATGAAAATGAAAAATTATCA ACAAATTGTGATATCACCATCACCACCACTACAGCCACCATCATCAACATCTCTACCATC ACCACCAACTACTAATATAAATCAAAATGATTCNAAATTTAAAAATTTAAAAAATAAAAA ATAAATTAAATATCCCATT
Length of connected seq.	1389
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas