VHA306
Library VH
(Link to library)
Clone ID VHA306
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16560-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>VHA306 (VHA306Q) /CSM/VH/VHA3-A/VHA306Q.Seq.d/
XXXXXXXXXXTNNNNNNGGNNNNNNNNNNNNNTNNNNNGNNNNGNTTNNNNNNNCNNNNN
NNNNNNNNNGGNNNNNATTNNANATANNNNNGGTTTNCNNCNGNNCNNNNNNNTNTNNNN
TNNNNTGGTNANCNNNNGGAANANGGTNGNNNTNTNTNNGNNNATNACATTCNAAAGGAA
TCNNNTNTTCNNTTAGTTTTAAGATTAANAGGTGGTATGCAAATTTTTGTTAAAACTCTC
ANTGGTAAAACTATCACTTTGGAAGTTGAAGGTTNTGATAATATTGAAAATGTAAAGGCT
AAAATCCAAGATAAAGAAGGTATTCCACCAGATCAACAAAGATTAATNTTTGCCGGTAAA
CAATTAGAAGATGGTCGTACTCTTTNTGACTACAATATTCAAAAAGAATCCACTNTCCAT
TTAGTTTTAAGATTAANAGGTGGTATGCAAATNTTTGTTAAAACTNTCACTGGTAAAACN
ATCACTTTAGAAGTTGAAGGTTNTGATAACATTGAAAATGTTAAAGCCAAGATCCAAGAT
AAAGAAGGTATTCCACCAGATCAACAAAGATTAANT
sequence update 2002. 9.10
Translated Amino Acid sequence
---XXXXXXXXXXXXXXXXXXXGXXXXXXXFXXXXXXXXXXGXXXEXGXXXXXXXIXKES
XXXLVLRLXGGMQIFVKTLXGKTITLEVEGXDNIENVKAKIQDKEGIPPDQQRLXFAGKQ
LEDGRTLXDYNIQKESTXHLVLRLXGGMQXFVKTXTGKTITLEVEGXDNIENVKAKIQDK
EGIPPDQQRLX


Translated Amino Acid sequence (All Frames)
Frame A:
---xxgxxxxxxxxxxxxxxxxxxxxxixxvxxxxxxxxxxwxxxgxxxxxxxxxhskgi
xxsxsfkixrwyanfc*nsxw*nyhfgs*rx**y*kckg*npr*rrystrstkinxcr*t
irrwsysx*lqyskrihxpfsfkixrwyanxc*nxhw*nxhfrs*rx**h*kc*sqdpr*
rrystrstkix


Frame B:
---XXXXXXXXXXXXXXXXXXXGXXXXXXXFXXXXXXXXXXGXXXEXGXXXXXXXIXKES
XXXLVLRLXGGMQIFVKTLXGKTITLEVEGXDNIENVKAKIQDKEGIPPDQQRLXFAGKQ
LEDGRTLXDYNIQKESTXHLVLRLXGGMQXFVKTXTGKTITLEVEGXDNIENVKAKIQDK
EGIPPDQQRLX


Frame C:
---xxxxxxxxxxxxxxxxxxxxxixxxxgxxxxxxxxxxxvxxxxxvxxxxxxtfxrnx
xfx*f*d*xvvckfllklsxvklslwklkvxiilkm*rlkskikkvfhqinkd*xlpvnn
*kmvvlfxttifkknplsi*f*d*xvvckxllklslvkxsl*klkvxitlkmlkprskik
kvfhqinkd*


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHA306 (VHA306Q) /CSM/VH/VHA3-A/VHA306Q.Seq.d/ 702 0.0
VFK832 (VFK832Q) /CSM/VF/VFK8-B/VFK832Q.Seq.d/ 696 0.0
VFK831 (VFK831Q) /CSM/VF/VFK8-B/VFK831Q.Seq.d/ 696 0.0
SFK503 (SFK503Q) /CSM/SF/SFK5-A/SFK503Q.Seq.d/ 696 0.0
SFJ463 (SFJ463Q) /CSM/SF/SFJ4-C/SFJ463Q.Seq.d/ 696 0.0
SFI665 (SFI665Q) /CSM/SF/SFI6-C/SFI665Q.Seq.d/ 696 0.0
CFJ113 (CFJ113Q) /CSM/CF/CFJ1-A/CFJ113Q.Seq.d/ 696 0.0
AFK196 (AFK196Q) /CSM/AF/AFK1-D/AFK196Q.Seq.d/ 696 0.0
VFI474 (VFI474Q) /CSM/VF/VFI4-D/VFI474Q.Seq.d/ 694 0.0
SSM248 (SSM248Q) /CSM/SS/SSM2-B/SSM248Q.Seq.d/ 694 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

M23754|M23754.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB2. 694 0.0 2
M23752|M23752.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB17. 549 e-152 1
M23751|M23751.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB18. 549 e-152 1
M19492|M19492.1 Slime mold (D.discoideum) ubiquitin lambda-229 gene, complete cds. 478 e-145 2
M23753|M23753.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB14. 488 e-134 2
M19491|M19491.1 Slime mold (D.discoideum) ubiquitin p229C/pLK229 gene, complete cds. 335 3e-88 2
M19666|M19666.1 Slime mold (D.discoideum) ubiquitin gene, 3' end, clone p229C. 335 3e-88 2
M23748|M23748.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB19. 335 3e-88 2
Z54197|Z54197.1 C.albicans UBI4 gene encoding polyubiquitin. 174 2e-85 3
Y17558|Y17558.1 Candida albicans UB14 gene. 256 2e-83 3
dna update 2003. 7.18
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

B27806(B27806) ubiquitin (clone lambda229) - slime mold (Dictyos... 236 4e-61
M23754_1(M23754|pid:none) D.discoideum ubiquitin mRNA, complete ... 236 4e-61
A27806(A27806) polyubiquitin 5 (clone pLK229) - slime mold (Dict... 234 1e-60
M19666_1(M19666|pid:none) Slime mold (D.discoideum) ubiquitin ge... 234 1e-60
B34080(B34080)polyubiquitin 5 (clone DCUB19) - slime mold (Dicty... 234 1e-60
AB021974_1(AB021974|pid:none) Bombyx mori UBI3 mRNA for polyubiq... 226 2e-58
S40611(S40611;S34707) polyubiquitin 5 - Volvox carteri &X74214_... 226 2e-58
Y12081_1(Y12081|pid:none) Suberites domuncula mRNA for polyubiqu... 226 2e-58
S32020(S32020) polyubiquitin 6 - Geodia cydonium &X70917_1(X709... 226 2e-58
T16144(T16144) ubiquitin - Caenorhabditis elegans &U23172_1(U23... 226 2e-58
protein update 2009. 4.19
PSORT

psg: 0.79 gvh: 0.51 alm: 0.43 top: 0.53 tms: 0.00 mit: 0.18 mip: 0.08
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.50 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: nuclear
36.0 %: cytoplasmic
4.0 %: mitochondrial
4.0 %: vesicles of secretory system
4.0 %: extracellular, including cell wall
4.0 %: endoplasmic reticulum

>> prediction for VHA306 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VHA306Z
3' end seq.
>VHA306Z.Seq
NNNNNNNNNNTNNNNNNGGNNNNNNNNNNNNNTNNNNNGNNNNGNTTNNNNNNNCNNNNN
NNNNNNNNNGGNNNNNATTNNANATANNNNNGGTTTNCNNCNGNNCNNNNNNNTNTNNNN
TNNNNTGGTNANCNNNNGGAANANGGTNGNNNTNTNTNNGNNNATNACATTCNAAAGGAA
TCNNNTNTTCNNTTAGTTTTAAGATTAANAGGTGGTATGCAAATTTTTGTTAAAACTCTC
ANTGGTAAAACTATCACTTTGGAAGTTGAAGGTTNTGATAATATTGAAAATGTAAAGGCT
AAAATCCAAGATAAAGAAGGTATTCCACCAGATCAACAAAGATTAATNTTTGCCGGTAAA
CAATTAGAAGATGGTCGTACTCTTTNTGACTACAATATTCAAAAAGAATCCACTNTCCAT
TTAGTTTTAAGATTAANAGGTGGTATGCAAATNTTTGTTAAAACTNTCACTGGTAAAACN
ATCACTTTAGAAGTTGAAGGTTNTGATAACATTGAAAATGTTAAAGCCAAGATCCAAGAT
AAAGAAGGTATTCCACCAGATCAACAAAGATTAANT
Length of 3' end seq. 576
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -