VHA280
Library VH
(Link to library)
Clone ID VHA280
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13591-1
Original site URL
Representative seq. ID VHA280P
(Link to Original site)
Representative DNA sequence
>VHA280 (VHA280Q) /CSM/VH/VHA2-D/VHA280Q.Seq.d/
CTTGTTGCTAGAANATCATTAAGAGATAATGAAGAACACTTAACTAAAGCACATGAAGAA
ATCAAAAATGCTTTAAATGGTGAAGAATGGATTATTGAATTTGATTGGGATGCCATTTTC
GATAAAGTTGATGAACATGTTAAAAAACAATTAGGTGAAGTATTTTATAAAAATTTATGT
CCAAATATTAGTAAATGTATTGTAAATGCATCANAAGATGAATTAACTAAAGAATCAATC
ATTAATGCAAATACTGCTAAAAAGATTGTATTAATTGTTAATGAAGATGCCAAGAACTCA
TCCTATTGGAAGTATGCATTTAATGGTGGTCAATTAAATCTTTTATTCAAGAAAGGTNCG
TAATAATATTACTGAAGCTGGTAATTTCGAATTATATAAAGTGATTCCAAGTGAAGGTGC
TTATAGTTTACCACCTCGTCTTANTATGAAAAAGAXXXXXXXXXXAATGCAAAGATTGTT
NTCCGTCGCAATGCCAAAGCAACCGGTTATTGNNATTGGAGTTTNGAAAGACAATGANTT
AGTAATCACCTTCAAATCAATCNTGCAATGTTAGTGNTAANGCAANNTNTGANTTCATTA
AAATTTNACCATCACCAGGNGTACTCACNTTAGCCTCTAGNATCNATNTGAGAGANAATC
NAGAGAAAATCAATGNATCTTTNGAAAAGATTAAANAAGTCTTGGGTAATGATTGGACNT
ATGATGAATCTTCAATCGANCAAGTTTATCCAAAATTAGAAGAAAATAATANACCNCGTG
TTGGTGATGTCTTTGCTGAAATCATTCGTTACATCAGTCAAAATATCGTTAAAACCATGT
AAAGATGATGATATGGTCAAAGAAGGTTTCGTTGAAGCAACTCAAAGATTGTAAAATCGT
CTTCCAATGNTGTTGAAAAACAAAGTTNTTATTGGGTTNGGNAATTCGATGGTGGTAANT
TAGTCGTATCATTCNAATCNATTTGTAATACTAGTGATAATGCAAATTTCAATTTTGAAG
CTCTCCTTTANAATTAATCCAAAAAATAAAAATAAAAATACAAAAAGATAATAGAAAATA
sequence update 2002.10.25
Translated Amino Acid sequence
lllexh*eimknt*lkhmkkskml*mvkngllnligmpfsiklmnmlknn*vkyfikiyv
qilvnvl*mhxkmn*lknqslmqillkrly*llmkmprthpigsmhlmvvn*IFYSRKVR
NNITEAGNFELYKVIPSEGAYSLPPRLXMKK---

---MQRLXSVAMPKQPVIXIGVXKDNXLVITFKSIXQC*x*xxx*xh*nxtitrxthxsl
*xxxerxsrenqxifxkd*xslg**ldx**ifnrxslskirrk*xtxcw*clc*nhslhq
skyr*nhvkmmiwskkvslkqlkdckivfqxc*ktkxllgxxirww*xsriixixl*y**
*ckfqf*ssplxliqkikikiqkdnrk


Translated Amino Acid sequence (All Frames)
Frame A:
lvarxslrdneehltkaheeiknalngeewiiefdwdaifdkvdehvkkqlgevfyknlc
pniskcivnasxdeltkesiinantakkivlivnedaknssywkyafnggqlnllfkkgx
**yy*sw*frii*sdsk*rcl*fttssxyek---

---nakivxrrnakatgyxxwsxerq*xsnhlqinxamlvxxqxxxslkfxhhqxysx*p
lxsx*exixrksmxlxkrlxkswvmigxmmnlqsxkfiqn*kkiixxvlvmsllksfvts
vkislkpckdddmvkegfveatqrl*nrlpmxlknkvxigxgnsmvvx*syhsnxfvilv
imqisilklsfxinpknknkntkr**ki

Frame B:
lllexh*eimknt*lkhmkkskml*mvkngllnligmpfsiklmnmlknn*vkyfikiyv
qilvnvl*mhxkmn*lknqslmqillkrly*llmkmprthpigsmhlmvvn*IFYSRKVR
NNITEAGNFELYKVIPSEGAYSLPPRLXMKK---

---MQRLXSVAMPKQPVIXIGVXKDNXLVITFKSIXQC*x*xxx*xh*nxtitrxthxsl
*xxxerxsrenqxifxkd*xslg**ldx**ifnrxslskirrk*xtxcw*clc*nhslhq
skyr*nhvkmmiwskkvslkqlkdckivfqxc*ktkxllgxxirww*xsriixixl*y**
*ckfqf*ssplxliqkikikiqkdnrk

Frame C:
cc*xiikr**rtln*st*rnqkcfkw*rmdy*i*lgchfr*s**tc*ktir*sil*kfms
ky**myckcixr*in*rinh*ckyc*kdcinc**rcqelillevci*wwsiksfiqerxv
iillklvisnyik*fqvkvlivyhlvlx*kr---

---ckdcxpsqcqsnrllxlefxktmx**spsnqscnvsxxaxxxfikixpspgvltlas
xixxrxnxekinxsxekikxvlgndwtydessixqvypkleennxprvgdvfaeiiryis
qnivktm*r**ygqrrfr*snskivksssnxvekqsxywvxxfdggxlvvsfxsicntsd
nanfnfeallxn*skk*k*kykkiien

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHA280 (VHA280Q) /CSM/VH/VHA2-D/VHA280Q.Seq.d/ 1752 0.0
VHA261 (VHA261Q) /CSM/VH/VHA2-C/VHA261Q.Seq.d/ 846 0.0
VHP470 (VHP470Q) /CSM/VH/VHP4-C/VHP470Q.Seq.d/ 839 0.0
VHP452 (VHP452Q) /CSM/VH/VHP4-C/VHP452Q.Seq.d/ 839 0.0
VHP353 (VHP353Q) /CSM/VH/VHP3-C/VHP353Q.Seq.d/ 839 0.0
VHO859 (VHO859Q) /CSM/VH/VHO8-C/VHO859Q.Seq.d/ 839 0.0
VHO774 (VHO774Q) /CSM/VH/VHO7-D/VHO774Q.Seq.d/ 839 0.0
VHO667 (VHO667Q) /CSM/VH/VHO6-C/VHO667Q.Seq.d/ 839 0.0
VHO513 (VHO513Q) /CSM/VH/VHO5-A/VHO513Q.Seq.d/ 839 0.0
VHN289 (VHN289Q) /CSM/VH/VHN2-D/VHN289Q.Seq.d/ 839 0.0

own update 2004.12.24
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

CT458730|CT458730.1 Sus scrofa genomic clone CH242-523I4, genomic survey sequence. 50 0.13 1
AC104331|AC104331.2 Homo sapiens chromosome 3 clone RP11-543A18, complete sequence. 34 0.28 2
AC121493|AC121493.1 Homo sapiens chromosome 3 clone RP11-88H12, complete sequence. 34 0.28 2
AC117081|AC117081.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence. 42 0.41 9
EC306900|EC306900.1 OVARYF089833K8 POSSUM_01-POSSUM-C-OVARY-2KB Trichosurus vulpecula cDNA clone 1061024733511, mRNA sequence. 48 0.51 1
AC132767|AC132767.3 Rattus norvegicus clone CH230-243N15, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces. 48 0.51 1
AC105810|AC105810.3 Rattus norvegicus clone CH230-247F1, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces. 48 0.51 1
AY436634|AY436634.1 Homo sapiens sulfotransferase, estrogen-preferring (STE) gene, complete cds. 34 1.3 5
AC137435|AC137435.1 Rattus norvegicus clone CH230-unknown, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces. 46 2.0 1
AC131481|AC131481.5 Rattus norvegicus clone CH230-7F8, WORKING DRAFT SEQUENCE, 3 unordered pieces. 46 2.0 1
dna update 2007. 3.14
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC117081_29(AC117081|pid:none) Dictyostelium discoideum chromoso... 79 1e-15
AC117081_21(AC117081|pid:none) Dictyostelium discoideum chromoso... 78 2e-15
CP001083_1789(CP001083|pid:none) Clostridium botulinum Ba4 str. ... 36 2.7

protein update 2009. 6.26
PSORT

psg: 0.59 gvh: 0.44 alm: 0.44 top: 0.53 tms: 0.00 mit: 0.28 mip: 0.03
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: cytoplasmic
32.0 %: nuclear
12.0 %: mitochondrial
4.0 %: peroxisomal

>> prediction for VHA280 is cyt

5' end seq. ID VHA280F
5' end seq.
>VHA280F.Seq
CTTGTTGCTAGAANATCATTAAGAGATAATGAAGAACACTTAACTAAAGCACATGAAGAA
ATCAAAAATGCTTTAAATGGTGAAGAATGGATTATTGAATTTGATTGGGATGCCATTTTC
GATAAAGTTGATGAACATGTTAAAAAACAATTAGGTGAAGTATTTTATAAAAATTTATGT
CCAAATATTAGTAAATGTATTGTAAATGCATCANAAGATGAATTAACTAAAGAATCAATC
ATTAATGCAAATACTGCTAAAAAGATTGTATTAATTGTTAATGAAGATGCCAAGAACTCA
TCCTATTGGAAGTATGCATTTAATGGTGGTCAATTAAATCTTTTATTCAAGAAAGGTNCG
TAATAATATTACTGAAGCTGGTAATTTCGAATTATATAAAGTGATTCCAAGTGAAGGTGC
TTATAGTTTACCACCTCGTCTTANTATGAAAAAGANNNNNNNNNN
Length of 5' end seq. 465
3' end seq. ID VHA280Z
3' end seq.
>VHA280Z.Seq
NNNNNNNNNNAATGCAAAGATTGTTNTCCGTCGCAATGCCAAAGCAACCGGTTATTGNNA
TTGGAGTTTNGAAAGACAATGANTTAGTAATCACCTTCAAATCAATCNTGCAATGTTAGT
GNTAANGCAANNTNTGANTTCATTAAAATTTNACCATCACCAGGNGTACTCACNTTAGCC
TCTAGNATCNATNTGAGAGANAATCNAGAGAAAATCAATGNATCTTTNGAAAAGATTAAA
NAAGTCTTGGGTAATGATTGGACNTATGATGAATCTTCAATCGANCAAGTTTATCCAAAA
TTAGAAGAAAATAATANACCNCGTGTTGGTGATGTCTTTGCTGAAATCATTCGTTACATC
AGTCAAAATATCGTTAAAACCATGTAAAGATGATGATATGGTCAAAGAAGGTTTCGTTGA
AGCAACTCAAAGATTGTAAAATCGTCTTCCAATGNTGTTGAAAAACAAAGTTNTTATTGG
GTTNGGNAATTCGATGGTGGTAANTTAGTCGTATCATTCNAATCNATTTGTAATACTAGT
GATAATGCAAATTTCAATTTTGAAGCTCTCCTTTANAATTAATCCAAAAAATAAAAATAA
AAATACAAAAAGATAATAGAAAATA
Length of 3' end seq. 625
Connected seq. ID VHA280P
Connected seq.
>VHA280P.Seq
CTTGTTGCTAGAANATCATTAAGAGATAATGAAGAACACTTAACTAAAGCACATGAAGAA
ATCAAAAATGCTTTAAATGGTGAAGAATGGATTATTGAATTTGATTGGGATGCCATTTTC
GATAAAGTTGATGAACATGTTAAAAAACAATTAGGTGAAGTATTTTATAAAAATTTATGT
CCAAATATTAGTAAATGTATTGTAAATGCATCANAAGATGAATTAACTAAAGAATCAATC
ATTAATGCAAATACTGCTAAAAAGATTGTATTAATTGTTAATGAAGATGCCAAGAACTCA
TCCTATTGGAAGTATGCATTTAATGGTGGTCAATTAAATCTTTTATTCAAGAAAGGTNCG
TAATAATATTACTGAAGCTGGTAATTTCGAATTATATAAAGTGATTCCAAGTGAAGGTGC
TTATAGTTTACCACCTCGTCTTANTATGAAAAAGA----------AATGCAAAGATTGTT
NTCCGTCGCAATGCCAAAGCAACCGGTTATTGNNATTGGAGTTTNGAAAGACAATGANTT
AGTAATCACCTTCAAATCAATCNTGCAATGTTAGTGNTAANGCAANNTNTGANTTCATTA
AAATTTNACCATCACCAGGNGTACTCACNTTAGCCTCTAGNATCNATNTGAGAGANAATC
NAGAGAAAATCAATGNATCTTTNGAAAAGATTAAANAAGTCTTGGGTAATGATTGGACNT
ATGATGAATCTTCAATCGANCAAGTTTATCCAAAATTAGAAGAAAATAATANACCNCGTG
TTGGTGATGTCTTTGCTGAAATCATTCGTTACATCAGTCAAAATATCGTTAAAACCATGT
AAAGATGATGATATGGTCAAAGAAGGTTTCGTTGAAGCAACTCAAAGATTGTAAAATCGT
CTTCCAATGNTGTTGAAAAACAAAGTTNTTATTGGGTTNGGNAATTCGATGGTGGTAANT
TAGTCGTATCATTCNAATCNATTTGTAATACTAGTGATAATGCAAATTTCAATTTTGAAG
CTCTCCTTTANAATTAATCCAAAAAATAAAAATAAAAATACAAAAAGATAATAGAAAATA
Length of connected seq. 1070
Full length Seq ID -
Full length Seq. -
Length of full length seq. -