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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHA266
Library VH
(Link to library)
Clone ID VHA266
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11856-1|Contig-U15471-1
Original site URL
Representative seq. ID VHA266P
(Link to Original site)
Representative DNA sequence 
>VHA266 (VHA266Q) /CSM/VH/VHA2-C/VHA266Q.Seq.d/
GATACCAAGCATTATTTGAAATATTAAACATAGTTAATTAAGAATGAAAGATTTATTATC
ATCATTATCAAAAGGTATTCCTTTTGAGCCATTACCAGAGCACCCAGGATTAGATTCAAC
TGTACCACATGCTCCAGGTCGTCCAATTAATTTAACATTAAACGAAAAAAAGTTAGCAAT
TAAAAATTCATTAAGATATTTCCCAAATTCATTACATTCAATTTTAGCAAATGAATTTTT
AGAAGAATTAAATAAATATGGACATATTTATATGTATAGATTTAGACCAACTCATTATGA
GATGAAAGCATATCCAATTGAAGAATATCCAGCAAAATCAAGACAAGCAGCATCGATTAT
GTTAATGATTATGAATAATTTAGATAGAGAGGTTGCACAATTTCCAAATGAATTGGTAAC
CTATGGTGGTAATGGTAGTGTTTTTCAAAATTGGGCACAATATCATTTAACCATGAAATA
TCTTTCAGAGATGACAGATCAACAAACCCTAACAATGTATAGTGGTCATCCAATGGGTTT
ATTCCCATCAAATGAAAGTTCACCACGTGTTATCGTTACCAATGGTATGGTGXXXXXXXX
XXTGATTTAATTAATTNTTTAAATTTTTAAAAAAAAAACNAAATACNAATAATATAAATA
TATAAAATTTTTTTTCTTTTATTTTTTTTTTTTTAAAAATATATATAAATAAAT
sequence update 2002.10.25
Translated Amino Acid sequence 
ipsii*nikhs*LRMKDLLSSLSKGIPFEPLPEHPGLDSTVPHAPGRPINLTLNEKKLAI
KNSLRYFPNSLHSILANEFLEELNKYGHIYMYRFRPTHYEMKAYPIEEYPAKSRQAASIM
LMIMNNLDREVAQFPNELVTYGGNGSVFQNWAQYHLTMKYLSEMTDQQTLTMYSGHPMGL
FPSNESSPRVIVTNGMV---

---DLINXLNF*kknxixii*iykiffllffff*kyi*in
Translated Amino Acid sequence (All Frames) 
Frame A:
dtkhylky*t*liknerfiiiiikrysf*aitraprirfncttcsrssn*fnikrkkvsn
*kfikifpkfitfnfsk*ifrrik*iwtylyv*i*tnsl*desisn*risskiktssidy
vndye*fr*rgctisk*ignlww*w*cfsklgtisfnheisfrddrstnpnnv*wssngf
ipik*kfttcyryqwyg---

---*fn*xfkflkkkxntnnini*nffsfiffflkiyink

Frame B:
ipsii*nikhs*LRMKDLLSSLSKGIPFEPLPEHPGLDSTVPHAPGRPINLTLNEKKLAI
KNSLRYFPNSLHSILANEFLEELNKYGHIYMYRFRPTHYEMKAYPIEEYPAKSRQAASIM
LMIMNNLDREVAQFPNELVTYGGNGSVFQNWAQYHLTMKYLSEMTDQQTLTMYSGHPMGL
FPSNESSPRVIVTNGMV---

---DLINXLNF*kknxixii*iykiffllffff*kyi*in

Frame C:
yqalfeilnivn*e*kiyyhhyqkvfllshyqstqd*iqlyhmlqvvqli*h*tkks*ql
kih*disqihyiqf*qmnf*kn*inmdificidldqlimr*khiqlkniqqnqdkqhrlc
**l*ii*ierlhnfqmnw*pmvvmvvffkighnii*p*nifqr*qinkp*qcivviqwvy
shqmkvhhvlslpmvw---

---i*lix*ifkkktkyx*ykyikffffyffffkniyk*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHA266 (VHA266Q) /CSM/VH/VHA2-C/VHA266Q.Seq.d/                       1144   0.0
VHC407 (VHC407Q) /CSM/VH/VHC4-A/VHC407Q.Seq.d/                       1132   0.0
SFG741 (SFG741Q) /CSM/SF/SFG7-B/SFG741Q.Seq.d/                       1132   0.0
VHJ721 (VHJ721Q) /CSM/VH/VHJ7-A/VHJ721Q.Seq.d/                       1130   0.0
VHB779 (VHB779Q) /CSM/VH/VHB7-D/VHB779Q.Seq.d/                       1126   0.0
CHP841 (CHP841Q) /CSM/CH/CHP8-B/CHP841Q.Seq.d/                       1126   0.0
CHM712 (CHM712Q) /CSM/CH/CHM7-A/CHM712Q.Seq.d/                       1126   0.0
CHI433 (CHI433Q) /CSM/CH/CHI4-B/CHI433Q.Seq.d/                       1126   0.0
VFD202 (VFD202Q) /CSM/VF/VFD2-A/VFD202Q.Seq.d/                       1124   0.0
VHB638 (VHB638Q) /CSM/VH/VHB6-B/VHB638Q.Seq.d/                       1120   0.0
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC115612|AC115612.2 Dictyostelium discoideum chromosome 2 map 6245135-6357017 strain AX4, complete sequence.   833   0.0    5
EJ384653|EJ384653.1 1092963796299 Global-Ocean-Sampling_GS-28-01-01-1P6-2P0KB marine metagenome genomic clone 1061002356772 3', genomic survey sequence.    98   2e-16  2
EK192951|EK192951.1 1095460025989 Global-Ocean-Sampling_GS-31-01-01-1P3-1P8KB marine metagenome genomic clone 1061005731710 3', genomic survey sequence.    62   1e-14  2
EK163249|EK163249.1 1095458040606 Global-Ocean-Sampling_GS-31-01-01-1P3-1P8KB marine metagenome genomic clone 1061005731710 5', genomic survey sequence.    62   1e-14  2
EJ250666|EJ250666.1 1095344030991 Global-Ocean-Sampling_GS-27-01-01-1P8-2P0KB marine metagenome genomic clone 1061005477347 5', genomic survey sequence.    48   9e-11  3
EK308412|EK308412.1 1095462388644 Global-Ocean-Sampling_GS-31-01-01-1P3-1P8KB marine metagenome genomic clone 1061005784059 5', genomic survey sequence.    68   3e-10  3
EJ059409|EJ059409.1 1095456055039 Global-Ocean-Sampling_GS-26-01-01-1P3-1P6KB marine metagenome genomic clone 1061005639285 5', genomic survey sequence.    76   1e-09  1
EC821790|EC821790.1 SME00001932 esmbsro2 Sawyeria marylandensis cDNA, mRNA sequence.    58   7e-09  3
EJ482402|EJ482402.1 1095403478448 Global-Ocean-Sampling_GS-28-01-01-1P6-2P0KB marine metagenome genomic clone 1061005556212 3', genomic survey sequence.    36   3e-07  5
AE014819|AE014819.1 Plasmodium falciparum 3D7 chromosome 14 section 4 of 13 of the complete sequence.    40   8e-07  9
dna update 2007. 3.14
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC115612_6(AC115612|pid:none) Dictyostelium discoideum chromosom...   377   e-103
(Q86AX3) RecName: Full=Probable urocanate hydratase;          Sh...   377   e-103
BC091617_1(BC091617|pid:none) Xenopus tropicalis MGC97780 protei...   239   6e-62
EU016618_28(EU016618|pid:none) Uncultured marine microorganism H...   222   1e-56
CU207366_232(CU207366|pid:none) Gramella forsetii KT0803 complet...   212   8e-54
(Q9NAE2) RecName: Full=Probable urocanate hydratase;          Sh...   211   2e-53
CP000853_571(CP000853|pid:none) Alkaliphilus oremlandii OhILAs, ...   170   3e-41
CP000724_3913(CP000724|pid:none) Alkaliphilus metalliredigens QY...   167   4e-40
CP000879_235(CP000879|pid:none) Petrotoga mobilis SJ95, complete...   165   1e-39
CP001087_4340(CP001087|pid:none) Desulfobacterium autotrophicum ...   163   4e-39
protein update 2009. 6.26
PSORT 

 psg: 0.78  gvh: 0.53  alm: 0.48  top: 0.53  tms: 0.00  mit: 0.25  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 40.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for VHA266 is cyt
5' end seq. ID VHA266F
5' end seq. 
>VHA266F.Seq
GATACCAAGCATTATTTGAAATATTAAACATAGTTAATTAAGAATGAAAGATTTATTATC
ATCATTATCAAAAGGTATTCCTTTTGAGCCATTACCAGAGCACCCAGGATTAGATTCAAC
TGTACCACATGCTCCAGGTCGTCCAATTAATTTAACATTAAACGAAAAAAAGTTAGCAAT
TAAAAATTCATTAAGATATTTCCCAAATTCATTACATTCAATTTTAGCAAATGAATTTTT
AGAAGAATTAAATAAATATGGACATATTTATATGTATAGATTTAGACCAACTCATTATGA
GATGAAAGCATATCCAATTGAAGAATATCCAGCAAAATCAAGACAAGCAGCATCGATTAT
GTTAATGATTATGAATAATTTAGATAGAGAGGTTGCACAATTTCCAAATGAATTGGTAAC
CTATGGTGGTAATGGTAGTGTTTTTCAAAATTGGGCACAATATCATTTAACCATGAAATA
TCTTTCAGAGATGACAGATCAACAAACCCTAACAATGTATAGTGGTCATCCAATGGGTTT
ATTCCCATCAAATGAAAGTTCACCACGTGTTATCGTTACCAATGGTATGGTGNNNNNNNN
NN
Length of 5' end seq. 602
3' end seq. ID VHA266Z
3' end seq. 
>VHA266Z.Seq
NNNNNNNNNNTGATTTAATTAATTNTTTAAATTTTTAAAAAAAAAACNAAATACNAATAA
TATAAATATATAAAATTTTTTTTCTTTTATTTTTTTTTTTTTAAAAATATATATAAATAA
AT
Length of 3' end seq. 122
Connected seq. ID VHA266P
Connected seq. 
>VHA266P.Seq
GATACCAAGCATTATTTGAAATATTAAACATAGTTAATTAAGAATGAAAGATTTATTATC
ATCATTATCAAAAGGTATTCCTTTTGAGCCATTACCAGAGCACCCAGGATTAGATTCAAC
TGTACCACATGCTCCAGGTCGTCCAATTAATTTAACATTAAACGAAAAAAAGTTAGCAAT
TAAAAATTCATTAAGATATTTCCCAAATTCATTACATTCAATTTTAGCAAATGAATTTTT
AGAAGAATTAAATAAATATGGACATATTTATATGTATAGATTTAGACCAACTCATTATGA
GATGAAAGCATATCCAATTGAAGAATATCCAGCAAAATCAAGACAAGCAGCATCGATTAT
GTTAATGATTATGAATAATTTAGATAGAGAGGTTGCACAATTTCCAAATGAATTGGTAAC
CTATGGTGGTAATGGTAGTGTTTTTCAAAATTGGGCACAATATCATTTAACCATGAAATA
TCTTTCAGAGATGACAGATCAACAAACCCTAACAATGTATAGTGGTCATCCAATGGGTTT
ATTCCCATCAAATGAAAGTTCACCACGTGTTATCGTTACCAATGGTATGGTG--------
--TGATTTAATTAATTNTTTAAATTTTTAAAAAAAAAACNAAATACNAATAATATAAATA
TATAAAATTTTTTTTCTTTTATTTTTTTTTTTTTAAAAATATATATAAATAAAT
Length of connected seq. 704
Full length Seq ID -
Full length Seq. -
Length of full length seq. -