VHA180
Library VH
(Link to library)
Clone ID VHA180
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U16497-1
Original site URL
Representative seq. ID VHA180P
(Link to Original site)
Representative DNA sequence
>VHA180 (VHA180Q) /CSM/VH/VHA1-D/VHA180Q.Seq.d/
ATAAAATAAAAATATAAAAAAAAAATAAAAAAATTAAAAATGAACTATTTAAAACCAACA
ATATTTTTAATATTGNGTTTGGTCACATTTGTATATTCACAACCATCAACTTTAACAATT
CAAGGAACAATTTTTGATCAACATCCAGATTATAATAACAATTTCGAACCAAAGGGAGGA
TCCATTAAAAAAAATTTAGTCTTAAAAACTCTTGGAAGTAGCAAAGTACCAACTCTTGTT
TCTTTANATCCAGAGGATGATACAAATGAAGATGGTAGAATGATTACACCAAGCTTGTTC
CAATACTTTTATCAAACATCATCAAAACCATTAACCAAAAATTCTGGTGCAAATGTCCCA
ATTCCAATTAACCTTGTCTTGAATTACNATTCCAAAAAACAAGTTTATGTTTACAATGAT
CAATATTTTTTCCCAATTGATTACCAAGGATTTGATGTTGATTCAAAATATAGAACTTAT
AATAATGGTTCAGGATATCATAATTTCCATTTTTGTTTAAAATTGAATACTAAATTCACX
XXXXXXXXXTAGATGATGGCAATGCTTGCACTAAAGATACTTGTGTAAATGGTAATATTT
TCCACACACCAATTAACAAATGTTCAGGTTGTATGACTTGTAATCCAGTTTCTGGTAATT
GTGATTTATCCGACACCGTTTGCCAAGATGGTAATGAATGTACTACCAATGTTTGTGAAT
CAAGTGATAGTGTCCTTGGTGTATGTACAAACTCAACAGTTGAATGCGGTGCTACCAACA
CTGATAAATGTATCCAATTCTCTTGTAATGAAGCCACCGGTTGCCAACAATCAGCTGTCG
TTTGTCCAGATGTTGGTAGTTGTTTAGTTGGTTATTGTGATAGTAAACAAGGTTGTCTCA
CCAAACCAAGATCTTGCGATACTGGTGTTTTCTGTTTAACTGGTGAATGTATTGAAAATG
CTGGTGGTTGTATCGTCTATGAAAAACGTTGTGATGCTGATAATGGAAGATGTCAACAAG
GTGTATGTGTAAATAATACCGCCACTGAAGAAGGTTATTGTAAATCTGAAGACTATGATC
CATTACCATTCATTTGTAAAACTGGTGCTGTCGTTTCAACTGCTGTCATTGCTGGTGTCA
CTGTCGCTGGTGCTGTTGCACTTGGTGTTTTCATTTATGGTGGTAAAAGAGGTTATGACT
ATTGGAAAGAATCAAGAAATGTTCAATTCAGTGGTTCAAATTCTAATCCACTTTATGAAC
AAAATCCAAATGGTTGCTGGTGTAAATCCATTATATAATGATAATTCTGCATTATAAAAT
AAAATTACGTCGTATATAAATCCTTATTTATTCGAAA
sequence update 2002.10.25
Translated Amino Acid sequence
ik*KYKKKIKKLKMNYLKPTIFLILXLVTFVYSQPSTLTIQGTIFDQHPDYNNNFEPKGG
SIKKNLVLKTLGSSKVPTLVSLXPEDDTNEDGRMITPSLFQYFYQTSSKPLTKNSGANVP
IPINLVLNYXSKKQVYVYNDQYFFPIDYQGFDVDSKYRTYNNGSGYHNFHFCLKLNTKF-
--

---DDGNACTKDTCVNGNIFHTPINKCSGCMTCNPVSGNCDLSDTVCQDGNECTTNVCES
SDSVLGVCTNSTVECGATNTDKCIQFSCNEATGCQQSAVVCPDVGSCLVGYCDSKQGCLT
KPRSCDTGVFCLTGECIENAGGCIVYEKRCDADNGRCQQGVCVNNTATEEGYCKSEDYDP
LPFICKTGAVVSTAVIAGVTVAGAVALGVFIYGGKRGYDYWKESRNVQFSGSNSNPLYEQ
NPNGCWCKSII***fciik*nyvvykslfir


Translated Amino Acid sequence (All Frames)
Frame A:
ik*KYKKKIKKLKMNYLKPTIFLILXLVTFVYSQPSTLTIQGTIFDQHPDYNNNFEPKGG
SIKKNLVLKTLGSSKVPTLVSLXPEDDTNEDGRMITPSLFQYFYQTSSKPLTKNSGANVP
IPINLVLNYXSKKQVYVYNDQYFFPIDYQGFDVDSKYRTYNNGSGYHNFHFCLKLNTKF-
--

---*mmamlalkilv*mvifsthqltnvqvv*lviqflviviyptpfakmvmnvlpmfvn
qvivslvyvqtqqlnavlptlinvsnslvmkppvannqlsfvqmlvvv*lvivivnkvvs
pnqdlailvfsv*lvnvlkmlvvvssmknvvmlimedvnkvyv*iipplkkvivnlktmi
hyhsfvklvlsfqllsllvslslvllhlvfsfmvvkevmtigknqemfnsvvqilihfmn
kiqmvagvnplyndnsal*nkitsyinpylfe

Frame B:
*nknikkk*kn*k*ti*nqqyf*yxvwshlyihnhql*qfkeqfliniqiiitisnqred
plkki*s*kllevakyqllflxiqrmiqmkmve*lhqacsntfikhhqnh*pkilvqmsq
fqltls*itipknkfmftminifsqlitkdlmliqnieliimvqdiiisifv*n*ilns-
--

---r*wqclh*rylckw*yfphtn*qmfrlydl*ssfw*l*firhrlprw**myyqcl*i
k**cpwcmyklns*mrcyqh**mypill**shrlptiscrlsrcw*lfswll***trlsh
qtkilrywcflfnw*my*kcwwlyrl*ktl*c**wkmstrcmck*yrh*rrll*i*rl*s
itihl*nwccrfncchcwchcrwccctwcfhlww*krl*llerikkcsiqwfkf*stl*t
kskwllv*ihyimiilhykiklrri*iliysk

Frame C:
kiki*kknkkiknelfktnnifnixfghicifttinfnnsrnnf*stsrl**qfrtkgri
h*kkfslknswk*qstnscffxsrg*yk*rw*ndytklvpillsniiktinqkfwckcpn
sn*pclelxfqktslclq*siffpn*lpri*c*fki*nl**wfris*fpflfkiey*ih-
--

---DDGNACTKDTCVNGNIFHTPINKCSGCMTCNPVSGNCDLSDTVCQDGNECTTNVCES
SDSVLGVCTNSTVECGATNTDKCIQFSCNEATGCQQSAVVCPDVGSCLVGYCDSKQGCLT
KPRSCDTGVFCLTGECIENAGGCIVYEKRCDADNGRCQQGVCVNNTATEEGYCKSEDYDP
LPFICKTGAVVSTAVIAGVTVAGAVALGVFIYGGKRGYDYWKESRNVQFSGSNSNPLYEQ
NPNGCWCKSII***fciik*nyvvykslfir

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHA180 (VHA180Q) /CSM/VH/VHA1-D/VHA180Q.Seq.d/ 2486 0.0
VFG436 (VFG436Q) /CSM/VF/VFG4-B/VFG436Q.Seq.d/ 1562 0.0
VHB544 (VHB544Q) /CSM/VH/VHB5-B/VHB544Q.Seq.d/ 1540 0.0
VHP731 (VHP731Q) /CSM/VH/VHP7-B/VHP731Q.Seq.d/ 1526 0.0
VHI823 (VHI823Q) /CSM/VH/VHI8-A/VHI823Q.Seq.d/ 1522 0.0
VHB719 (VHB719Q) /CSM/VH/VHB7-A/VHB719Q.Seq.d/ 1509 0.0
VFO330 (VFO330Q) /CSM/VF/VFO3-B/VFO330Q.Seq.d/ 1507 0.0
VHH544 (VHH544Q) /CSM/VH/VHH5-B/VHH544Q.Seq.d/ 1503 0.0
VFM306 (VFM306Q) /CSM/VF/VFM3-A/VFM306Q.Seq.d/ 1499 0.0
VHO593 (VHO593Q) /CSM/VH/VHO5-D/VHO593Q.Seq.d/ 1493 0.0

own update 2004.12.24
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

U67940|U67940.1 Dictyostelium discoideum ORFveg106 mRNA, complete cds. 1439 0.0 3
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 113 2e-31 13
AC024031|AC024031.3 Homo sapiens chromosome 11 clone RP11-195I23, WORKING DRAFT SEQUENCE, 25 unordered pieces. 44 0.15 4
AE014308|AE014308.1 Homo sapiens chromosome 13q34 schizophrenia region contig 1 section 5 of 11 of the complete sequence. 42 0.42 6
DU908247|DU908247.1 376116 Tomato EcoRI BAC Library Solanum lycopersicum genomic clone SL_EcoRI0096N12 3, genomic survey sequence. 32 0.62 3
H71387|H71387.1 yu55f03.r1 Soares fetal liver spleen 1NFLS Homo sapiens cDNA clone IMAGE:230045 5', mRNA sequence. 48 0.64 1
CR954190|CR954190.1 Medicago truncatula chromosome 5 clone mth2-17o13, WORKING DRAFT SEQUENCE, 2 ordered pieces. 48 0.64 1
AC175252|AC175252.2 Bos taurus clone CH240-470L3, *** SEQUENCING IN PROGRESS ***, 31 unordered pieces. 48 0.64 1
AC173387|AC173387.2 Bos taurus clone CH240-11N12, *** SEQUENCING IN PROGRESS ***, 29 unordered pieces. 48 0.64 1
AC130652|AC130652.27 Medicago truncatula clone mth1-1k12, complete sequence. 48 0.64 1
dna update 2007. 3.13
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q94494) RecName: Full=Protein psiH; Flags: Precursor; &U67940_... 477 e-135
(Q86HT1) RecName: Full=Protein psiL; Flags: Precursor; &AC11695... 243 2e-62
(Q54VS2) RecName: Full=Protein psiP; Flags: Precursor; 223 2e-56
(Q54P69) RecName: Full=Protein psiM; Flags: Precursor; 205 3e-51
(Q557E9) RecName: Full=Protein psiG; Flags: Precursor; &AC11568... 189 2e-46
(Q54CH8) RecName: Full=Protein psiN; Flags: Precursor; 147 7e-34
(Q54G85) RecName: Full=Protein psiJ; Flags: Precursor; 142 2e-32
(Q55FQ4) RecName: Full=Protein psiB; Flags: Precursor; 135 3e-30
(Q968Z6) RecName: Full=Protein psiA; AltName: Full=Prespore-cell... 125 5e-27
(Q55FQ5) RecName: Full=Protein psiS; Flags: Precursor; 119 2e-25
protein update 2009. 6.26
PSORT

psg: 0.71 gvh: 0.84 alm: 0.22 top: 0.73 tms: 0.07 mit: 0.38 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 1.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

20.0 %: cytoplasmic
20.0 %: nuclear
16.0 %: vesicles of secretory system
12.0 %: mitochondrial
8.0 %: Golgi
8.0 %: endoplasmic reticulum
4.0 %: extracellular, including cell wall
4.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: plasma membrane

>> prediction for VHA180 is cyt

5' end seq. ID VHA180F
5' end seq.
>VHA180F.Seq
ATAAAATAAAAATATAAAAAAAAAATAAAAAAATTAAAAATGAACTATTTAAAACCAACA
ATATTTTTAATATTGNGTTTGGTCACATTTGTATATTCACAACCATCAACTTTAACAATT
CAAGGAACAATTTTTGATCAACATCCAGATTATAATAACAATTTCGAACCAAAGGGAGGA
TCCATTAAAAAAAATTTAGTCTTAAAAACTCTTGGAAGTAGCAAAGTACCAACTCTTGTT
TCTTTANATCCAGAGGATGATACAAATGAAGATGGTAGAATGATTACACCAAGCTTGTTC
CAATACTTTTATCAAACATCATCAAAACCATTAACCAAAAATTCTGGTGCAAATGTCCCA
ATTCCAATTAACCTTGTCTTGAATTACNATTCCAAAAAACAAGTTTATGTTTACAATGAT
CAATATTTTTTCCCAATTGATTACCAAGGATTTGATGTTGATTCAAAATATAGAACTTAT
AATAATGGTTCAGGATATCATAATTTCCATTTTTGTTTAAAATTGAATACTAAATTCACN
NNNNNNNNN
Length of 5' end seq. 549
3' end seq. ID VHA180Z
3' end seq.
>VHA180Z.Seq
NNNNNNNNNNTAGATGATGGCAATGCTTGCACTAAAGATACTTGTGTAAATGGTAATATT
TTCCACACACCAATTAACAAATGTTCAGGTTGTATGACTTGTAATCCAGTTTCTGGTAAT
TGTGATTTATCCGACACCGTTTGCCAAGATGGTAATGAATGTACTACCAATGTTTGTGAA
TCAAGTGATAGTGTCCTTGGTGTATGTACAAACTCAACAGTTGAATGCGGTGCTACCAAC
ACTGATAAATGTATCCAATTCTCTTGTAATGAAGCCACCGGTTGCCAACAATCAGCTGTC
GTTTGTCCAGATGTTGGTAGTTGTTTAGTTGGTTATTGTGATAGTAAACAAGGTTGTCTC
ACCAAACCAAGATCTTGCGATACTGGTGTTTTCTGTTTAACTGGTGAATGTATTGAAAAT
GCTGGTGGTTGTATCGTCTATGAAAAACGTTGTGATGCTGATAATGGAAGATGTCAACAA
GGTGTATGTGTAAATAATACCGCCACTGAAGAAGGTTATTGTAAATCTGAAGACTATGAT
CCATTACCATTCATTTGTAAAACTGGTGCTGTCGTTTCAACTGCTGTCATTGCTGGTGTC
ACTGTCGCTGGTGCTGTTGCACTTGGTGTTTTCATTTATGGTGGTAAAAGAGGTTATGAC
TATTGGAAAGAATCAAGAAATGTTCAATTCAGTGGTTCAAATTCTAATCCACTTTATGAA
CAAAATCCAAATGGTTGCTGGTGTAAATCCATTATATAATGATAATTCTGCATTATAAAA
TAAAATTACGTCGTATATAAATCCTTATTTATTCGAAA
Length of 3' end seq. 818
Connected seq. ID VHA180P
Connected seq.
>VHA180P.Seq
ATAAAATAAAAATATAAAAAAAAAATAAAAAAATTAAAAATGAACTATTTAAAACCAACA
ATATTTTTAATATTGNGTTTGGTCACATTTGTATATTCACAACCATCAACTTTAACAATT
CAAGGAACAATTTTTGATCAACATCCAGATTATAATAACAATTTCGAACCAAAGGGAGGA
TCCATTAAAAAAAATTTAGTCTTAAAAACTCTTGGAAGTAGCAAAGTACCAACTCTTGTT
TCTTTANATCCAGAGGATGATACAAATGAAGATGGTAGAATGATTACACCAAGCTTGTTC
CAATACTTTTATCAAACATCATCAAAACCATTAACCAAAAATTCTGGTGCAAATGTCCCA
ATTCCAATTAACCTTGTCTTGAATTACNATTCCAAAAAACAAGTTTATGTTTACAATGAT
CAATATTTTTTCCCAATTGATTACCAAGGATTTGATGTTGATTCAAAATATAGAACTTAT
AATAATGGTTCAGGATATCATAATTTCCATTTTTGTTTAAAATTGAATACTAAATTCAC-
---------TAGATGATGGCAATGCTTGCACTAAAGATACTTGTGTAAATGGTAATATTT
TCCACACACCAATTAACAAATGTTCAGGTTGTATGACTTGTAATCCAGTTTCTGGTAATT
GTGATTTATCCGACACCGTTTGCCAAGATGGTAATGAATGTACTACCAATGTTTGTGAAT
CAAGTGATAGTGTCCTTGGTGTATGTACAAACTCAACAGTTGAATGCGGTGCTACCAACA
CTGATAAATGTATCCAATTCTCTTGTAATGAAGCCACCGGTTGCCAACAATCAGCTGTCG
TTTGTCCAGATGTTGGTAGTTGTTTAGTTGGTTATTGTGATAGTAAACAAGGTTGTCTCA
CCAAACCAAGATCTTGCGATACTGGTGTTTTCTGTTTAACTGGTGAATGTATTGAAAATG
CTGGTGGTTGTATCGTCTATGAAAAACGTTGTGATGCTGATAATGGAAGATGTCAACAAG
GTGTATGTGTAAATAATACCGCCACTGAAGAAGGTTATTGTAAATCTGAAGACTATGATC
CATTACCATTCATTTGTAAAACTGGTGCTGTCGTTTCAACTGCTGTCATTGCTGGTGTCA
CTGTCGCTGGTGCTGTTGCACTTGGTGTTTTCATTTATGGTGGTAAAAGAGGTTATGACT
ATTGGAAAGAATCAAGAAATGTTCAATTCAGTGGTTCAAATTCTAATCCACTTTATGAAC
AAAATCCAAATGGTTGCTGGTGTAAATCCATTATATAATGATAATTCTGCATTATAAAAT
AAAATTACGTCGTATATAAATCCTTATTTATTCGAAA
Length of connected seq. 1347
Full length Seq ID -
Full length Seq. -
Length of full length seq. -