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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHA158
Library VH
(Link to library)
Clone ID VHA158
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16209-1
Original site URL
Representative seq. ID VHA158E
(Link to Original site)
Representative DNA sequence 
>VHA158 (VHA158Q) /CSM/VH/VHA1-C/VHA158Q.Seq.d/
GTCAAGAATTTTAAAATCGTCTACGTTACTCTTATAAAAGATGACTCAATTCCCAGCTGC
ATTAAACCCACATCAAGATGATATCTTAAAGATGTTAGCTTGTCAAACCCATCTCGGTGG
TAACAACGTTGATGTTGAAATGGAATCATACACCTGGAAGAGAAAGGATAATGGTCACTT
CATCATCAATCTTGCCAAAACTTGGGAAAAGATTCAATTAGCTGCTCGTGTCATCGTTGC
TATTGAAAACCCAGCTGATATCTCAGTTATCTCTGCCAAACCATTGGGTCAACGTGCCGT
CCTCAAATTCGCCAACTTTATCGGTGCCACCGCTTTCTCTGGTCGTTTCACCCCAGGTAC
CTTTACCAATCAAATCCAATCAAAATTCACTGAACCAAGACTTTTGATTGTTGCTGATCC
ATTATTAGATAAACAACCATTAATGGAAGCTTCATACGTAAATATCCCAACCATCGCTCT
CTGTGATACCACCTCATGTTTAGACGGTGTTGATATTGCTATCCCATGTAACAACCGTGG
TAAAAACTCAATTGCCTTAATGTTCTGGTTATTAGCTCGTGAAGTTTTATACTTAAGAGG
TACCATCCCAAGAAACACCACCTGGTCTGTCAAAGTCGATCTCTTCATCTACAGAGATAC
TGATGAAGAACCAGAAAAAGAAAAAACCGCCGCTGTTGCTGCCGCTCCAGTTGCTGCCGT
TGAAGCTGTGAATTCACTCAACAACCAATTGC
sequence update 2002.10.27
Translated Amino Acid sequence 
srilksstlll*KMTQFPAALNPHQDDILKMLACQTHLGGNNVDVEMESYTWKRKDNGHF
IINLAKTWEKIQLAARVIVAIENPADISVISAKPLGQRAVLKFANFIGATAFSGRFTPGT
FTNQIQSKFTEPRLLIVADPLLDKQPLMEASYVNIPTIALCDTTSCLDGVDIAIPCNNRG
KNSIALMFWLLAREVLYLRGTIPRNTTWSVKVDLFIYRDTDEEPEKEKTAAVAAAPVAAV
EAVNSLNNQL
Translated Amino Acid sequence (All Frames) 
Frame A:
vknfkivyvtlikddsipscikptsr*ylkdvslsnpsrw*qr*c*ngiihleekg*wsl
hhqscqnlgkdsiscschrcy*kps*ylsylcqtigstcrpqirqlyrchrflwsfhpry
lyqsnpikih*tktfdcc*siir*ttingsfirkypnhrsl*yhlmfrrc*ycypm*qpw
*klnclnvlviss*sfilkryhpkkhhlvcqsrslhlqry**rtrkrknrrcccrssccr
*sceftqqpi


Frame B:
srilksstlll*KMTQFPAALNPHQDDILKMLACQTHLGGNNVDVEMESYTWKRKDNGHF
IINLAKTWEKIQLAARVIVAIENPADISVISAKPLGQRAVLKFANFIGATAFSGRFTPGT
FTNQIQSKFTEPRLLIVADPLLDKQPLMEASYVNIPTIALCDTTSCLDGVDIAIPCNNRG
KNSIALMFWLLAREVLYLRGTIPRNTTWSVKVDLFIYRDTDEEPEKEKTAAVAAAPVAAV
EAVNSLNNQL


Frame C:
qef*nrlrysykr*lnsqlh*thikmis*rc*lvkpisvvttlmlkwnhtpgrerimvts
ssilpklgkrfn*llvsslllktqlisqlslpnhwvnvpssnsptlsvpplslvvspqvp
lpiksnqnslnqdf*lllihy*innh*wklht*isqpslsvipphv*tvlillshvttvv
ktqlp*csgy*lvkfyt*evpsqetppglsksisssteilmknqkkkkpplllplqllpl
kl*ihsttnc
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHA158 (VHA158Q) /CSM/VH/VHA1-C/VHA158Q.Seq.d/                       1419   0.0
FC-BL17 (FC-BL17Q) /CSM/FC/FC-BL/FC-BL17Q.Seq.d/                     1366   0.0
FC-511 (FC-511Q) /CSM/CG/CG-FC/FC-511Q.Seq.d/                        1366   0.0
SLH669 (SLH669Q) /CSM/SL/SLH6-C/SLH669Q.Seq.d/                       1360   0.0
VHH685 (VHH685Q) /CSM/VH/VHH6-D/VHH685Q.Seq.d/                       1354   0.0
FC-BS24 (FC-BS24Q) /CSM/FC/FC-BS/FC-BS24Q.Seq.d/                     1201   0.0
VFN818 (VFN818Q) /CSM/VF/VFN8-A/VFN818Q.Seq.d/                       1160   0.0
VSG286 (VSG286Q) /CSM/VS/VSG2-D/VSG286Q.Seq.d/                       1068   0.0
SSI527 (SSI527Q) /CSM/SS/SSI5-B/SSI527Q.Seq.d/                        954   0.0
VSC141 (VSC141Q) /CSM/VS/VSC1-B/VSC141Q.Seq.d/                        361   1e-98
own update 2002.12.20
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

EC761066|EC761066.1 PSE00008330 rw_mgpallid Polysphondylium pallidum cDNA, mRNA sequence.   127   6e-84  6
EC599033|EC599033.1 B01.B0305362.751 Thellungiella halophila pGAD-GH cDNA library Thellungiella halophila cDNA, mRNA sequence.    90   9e-20  3
BG661617|BG661617.1 kx04b11.y1 Parastrongyloides trichosuri IL SL1 TOPO v2 Parastrongyloides trichosuri cDNA similar to SW:RSP4_CAEEL P46769 PROBABLE 40S RIBOSOMAL PROTEIN SA ;, mRNA sequence.    52   5e-11  4
BQ096846|BQ096846.1 IfHdk00487 Ictalurus furcatus head kidney cDNA library Ictalurus furcatus cDNA 5' similar to Ribosomal protein Sa (laminin receptor 1), mRNA sequence.    46   9e-11  4
CK406973|CK406973.1 AUF_IfLvr_212_m02 Ictalurus furcatus liver cDNA library Ictalurus furcatus cDNA 5' similar to laminin receptor 1, mRNA sequence.    46   1e-10  4
CK408423|CK408423.1 AUF_IfLvr_218_e18 Ictalurus furcatus liver cDNA library Ictalurus furcatus cDNA 5', mRNA sequence.    46   1e-10  4
BI744098|BI744098.1 kx55f06.y1 Parastrongyloides trichosuri PA pAMP1 v1 Chiapelli McCarter Parastrongyloides trichosuri cDNA 5' similar to SW:RSP4_CAEEL P46769 PROBABLE 40S RIBOSOMAL PROTEIN SA ;, mRNA sequence.    44   4e-10  4
BG661838|BG661838.1 kx07a08.y1 Parastrongyloides trichosuri IL SL1 TOPO v2 Parastrongyloides trichosuri cDNA similar to SW:RSP4_CAEEL P46769 PROBABLE 40S RIBOSOMAL PROTEIN SA ;, mRNA sequence.    44   6e-10  4
EB812172|EB812172.1 3763_A05 Botrytis cinerea expressed sequence tags Botryotinia fuckeliana cDNA 5', mRNA sequence.    42   8e-10  3
EB806189|EB806189.1 3483_E09 Botrytis cinerea expressed sequence tags Botryotinia fuckeliana cDNA 5', mRNA sequence.    42   8e-10  3
dna update 2007. 3.13
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF103361_1(EF103361|pid:none) Haliotis discus discus raminin rec...   273   6e-72
BT043675_1(BT043675|pid:none) Salmo salar clone HM5_1686 ribosom...   268   1e-70
BT049047_1(BT049047|pid:none) Salmo salar clone ssal-rgb2-530-26...   268   1e-70
AY550956_1(AY550956|pid:none) Sparus aurata 40S ribosomal protei...   268   2e-70
(Q4QY71) RecName: Full=40S ribosomal protein SA; AltName: Full=L...   268   2e-70
(B5FXT6) RecName: Full=40S ribosomal protein SA; AltName: Full=L...   266   7e-70
EU558331_1(EU558331|pid:none) Phoronis muelleri putative 40S rib...   266   7e-70
J02870_1(J02870|pid:none) Mouse laminin receptor mRNA, complete ...   266   7e-70
(Q4GWZ2) RecName: Full=40S ribosomal protein SA; AltName: Full=L...   265   1e-69
DQ212985_1(DQ212985|pid:none) Equus caballus laminin receptor 1 ...   265   1e-69
protein update 2009. 7.11
PSORT 

 psg: 0.86  gvh: 0.43  alm: 0.37  top: 0.40  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.50  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 88.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: nuclear

>> prediction for VHA158 is cyt
5' end seq. ID VHA158F
5' end seq. 
>VHA158F.Seq
GTCAAGAATTTTAAAATCGTCTACGTTACTCTTATAAAAGATGACTCAATTCCCAGCTGC
ATTAAACCCACATCAAGATGATATCTTAAAGATGTTAGCTTGTCAAACCCATCTCGGTGG
TAACAACGTTGATGTTGAAATGGAATCATACACCTGGAAGAGAAAGGATAATGGTCACTT
CATCATCAATCTTGCCAAAACTTGGGAAAAGATTCAATTAGCTGCTCGTGTCATCGTTGC
TATTGAAAACCCAGCTGATATCTCAGTTATCTCTGCCAAACCATTGGGTCAACGTGCCGT
CCTCAAATTCGCCAACTTTATCGGTGCCACCGCTTTCTCTGGTCGTTTCACCCCAGGTAC
CTTTACCAATCAAATCCAATCAAAATTCACTGAACCAAGACTTTTGATTGTTGCTGATCC
ATTATTAGATAAACAACCATTAATGGAAGCTTCATACGTAAATATCCCAACCATCGCTCT
CTGTGATACCACCTCATGTTTAGACGGTGTTGATATTGCTATCCCATGTAACAACCGTGG
TAAAAACTCAATTGCCTTAATGTTCTGGTTATTAGCTCGTGAAGTTTTATACTTNNNNNN
NNNN
Length of 5' end seq. 604
3' end seq. ID VHA158Z
3' end seq. 
>VHA158Z.Seq
NNNNNNNNNNTATAAAAGATGACTCAATTCCCAGCTGCATTAAACCCACATCAAGATGAT
ATCTTAAAGATGTTAGCTTGTCAAACCCATCTCGGTGGTAACAACGTTGATGTTGAAATG
GAATCATACACCTGGAAGAGAAAGGATAATGGTCACTTCATCATCAATCTTGCCAAAACT
TGGGAAAAGATTCAATTAGCTGCTCGTGTCATCGTTGCTATTGAAAACCCAGCTGATATC
TCAGTTATCTCTGCCAAACCATTGGGTCAACGTGCCGTCCTCAAATTCGCCAACTTTATC
GGTGCCACCGCTTTCTCTGGTCGTTTCACCCCAGGTACCTTTACCAATCAAATCCAATCA
AAATTCACTGAACCAAGACTTTTGATTGTTGCTGATCCATTATTAGATAAACAACCATTA
ATGGAAGCTTCATACGTAAATATCCCAACCATCGCTCTCTGTGATACCACCTCATGTTTA
GACGGTGTTGATATTGCTATCCCATGTAACAACCGTGGTAAAAACTCAATTGCCTTAATG
TTCTGGTTATTAGCTCGTGAAGTTTTATACTTAAGAGGTACCATCCCAAGAAACACCACC
TGGTCTGTCAAAGTCGATCTCTTCATCTACAGAGATACTGATGAAGAACCAGAAAAAGAA
AAAACCGCCGCTGTTGCTGCCGCTCCAGTTGCTGCCGTTGAAGCTGTGAATTCACTCAAC
AACCAATTGC
Length of 3' end seq. 730
Connected seq. ID VHA158P
Connected seq. 
>VHA158P.Seq
GTCAAGAATTTTAAAATCGTCTACGTTACTCTTATAAAAGATGACTCAATTCCCAGCTGC
ATTAAACCCACATCAAGATGATATCTTAAAGATGTTAGCTTGTCAAACCCATCTCGGTGG
TAACAACGTTGATGTTGAAATGGAATCATACACCTGGAAGAGAAAGGATAATGGTCACTT
CATCATCAATCTTGCCAAAACTTGGGAAAAGATTCAATTAGCTGCTCGTGTCATCGTTGC
TATTGAAAACCCAGCTGATATCTCAGTTATCTCTGCCAAACCATTGGGTCAACGTGCCGT
CCTCAAATTCGCCAACTTTATCGGTGCCACCGCTTTCTCTGGTCGTTTCACCCCAGGTAC
CTTTACCAATCAAATCCAATCAAAATTCACTGAACCAAGACTTTTGATTGTTGCTGATCC
ATTATTAGATAAACAACCATTAATGGAAGCTTCATACGTAAATATCCCAACCATCGCTCT
CTGTGATACCACCTCATGTTTAGACGGTGTTGATATTGCTATCCCATGTAACAACCGTGG
TAAAAACTCAATTGCCTTAATGTTCTGGTTATTAGCTCGTGAAGTTTTATACTT------
----TATAAAAGATGACTCAATTCCCAGCTGCATTAAACCCACATCAAGATGATATCTTA
AAGATGTTAGCTTGTCAAACCCATCTCGGTGGTAACAACGTTGATGTTGAAATGGAATCA
TACACCTGGAAGAGAAAGGATAATGGTCACTTCATCATCAATCTTGCCAAAACTTGGGAA
AAGATTCAATTAGCTGCTCGTGTCATCGTTGCTATTGAAAACCCAGCTGATATCTCAGTT
ATCTCTGCCAAACCATTGGGTCAACGTGCCGTCCTCAAATTCGCCAACTTTATCGGTGCC
ACCGCTTTCTCTGGTCGTTTCACCCCAGGTACCTTTACCAATCAAATCCAATCAAAATTC
ACTGAACCAAGACTTTTGATTGTTGCTGATCCATTATTAGATAAACAACCATTAATGGAA
GCTTCATACGTAAATATCCCAACCATCGCTCTCTGTGATACCACCTCATGTTTAGACGGT
GTTGATATTGCTATCCCATGTAACAACCGTGGTAAAAACTCAATTGCCTTAATGTTCTGG
TTATTAGCTCGTGAAGTTTTATACTTAAGAGGTACCATCCCAAGAAACACCACCTGGTCT
GTCAAAGTCGATCTCTTCATCTACAGAGATACTGATGAAGAACCAGAAAAAGAAAAAACC
GCCGCTGTTGCTGCCGCTCCAGTTGCTGCCGTTGAAGCTGTGAATTCACTCAACAACCAA
TTGC
Length of connected seq. 1314
Full length Seq ID VHA158E
Full length Seq. 
>VHA158E.Seq
GTCAAGAATTTTAAAATCGTCTACGTTACTCTTATAAAAGATGACTCAATTCCCAGCTGC
ATTAAACCCACATCAAGATGATATCTTAAAGATGTTAGCTTGTCAAACCCATCTCGGTGG
TAACAACGTTGATGTTGAAATGGAATCATACACCTGGAAGAGAAAGGATAATGGTCACTT
CATCATCAATCTTGCCAAAACTTGGGAAAAGATTCAATTAGCTGCTCGTGTCATCGTTGC
TATTGAAAACCCAGCTGATATCTCAGTTATCTCTGCCAAACCATTGGGTCAACGTGCCGT
CCTCAAATTCGCCAACTTTATCGGTGCCACCGCTTTCTCTGGTCGTTTCACCCCAGGTAC
CTTTACCAATCAAATCCAATCAAAATTCACTGAACCAAGACTTTTGATTGTTGCTGATCC
ATTATTAGATAAACAACCATTAATGGAAGCTTCATACGTAAATATCCCAACCATCGCTCT
CTGTGATACCACCTCATGTTTAGACGGTGTTGATATTGCTATCCCATGTAACAACCGTGG
TAAAAACTCAATTGCCTTAATGTTCTGGTTATTAGCTCGTGAAGTTTTATACTTAAGAGG
TACCATCCCAAGAAACACCACCTGGTCTGTCAAAGTCGATCTCTTCATCTACAGAGATAC
TGATGAAGAACCAGAAAAAGAAAAAACCGCCGCTGTTGCTGCCGCTCCAGTTGCTGCCGT
TGAAGCTGTGAATTCACTCAACAACCAATTGC
Length of full length seq. 752