NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHA108
Library VH
(Link to library)
Clone ID VHA108
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10823-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>VHA108 (VHA108Q) /CSM/VH/VHA1-A/VHA108Q.Seq.d/
XXXXXXXXXXGTNGTTAGACCATTACTCTTNGGAATATCCATCAGGATCCNAAATACTTT
GCAATTGATCANCAATTTTTAGTTGGTACAGGTTTAATGGTATCACCAGTTNTCACTCAA
GGTGNTACCACAGTGAATGCTTACTTCCCAAATGATATNTGGTATGAATATGGTAATGGT
TCATTGGTTCAATCAGTTGGTACCCATCAAACTTTAAATGCTCCATTCGATGTAATCAAC
GTTCATATGCGTGGTGGTAATATCATTCCAACTCAACCAACCTCCTCATATGTTACACCA
GTTGATGGTATTCCAATTACCACTAAAATCTCTAGAACTTTACCATTTGAATTGATTATT
GCCTTGGATTCTTCATTACAAGCAACTGGTCAATTATTCTTGGATGATGGTGAATCAATT
CAAACCTATGTTGATAATAAATACTCTTTCATTCAATTCGATGTTGTCTCCTCACCATCT
TCATCTGCCTACAAATTACAATCAACCATTCTCAATAACAATTATAATGGTACCGCTTCT
TTAATCATTAATTCTATCCAAATCTACGGTTCGCCATCAGTTCAACAAGTCATTGTTAAT
GGTAGCCCAATCAATTCATTTAATGCTGTTTCTGATTCAACTCTCTCTGTTTCAAATTTA
CAACTTGCTTTAGATGAATCCTTTGAAGTTGATTTTGTATTATATTAAAAATTATCAACA
AATAAAATTAAAATTAGTTATATTTTTTTAAA
sequence update 2002. 9.10
Translated Amino Acid sequence 
---x*TITLXNIHQDPKYFAIDXQFLVGTGLMVSPVXTQGXTTVNAYFPNDXWYEYGNGS
LVQSVGTHQTLNAPFDVINVHMRGGNIIPTQPTSSYVTPVDGIPITTKISRTLPFELIIA
LDSSLQATGQLFLDDGESIQTYVDNKYSFIQFDVVSSPSSSAYKLQSTILNNNYNGTASL
IINSIQIYGSPSVQQVIVNGSPINSFNAVSDSTLSVSNLQLALDESFEVDFVLY*klstn
kikisyifl
Translated Amino Acid sequence (All Frames) 
Frame A:
---xldhysxeypsgsxilcn*sxifswyrfngitsxhsrxyhsecllpk*yxv*iw*wf
igsiswypsnfkcsircnqrsyaww*yhsnstnllicyts*wysnyh*nl*nfti*idyc
lgffitsnwsiilg*w*insnlc***ilfhsircclltificlqitinhsq*ql*wyrff
nh*fypnlrfaisstshc*w*pnqfi*ccf*fnslcfkfttcfr*il*s*fciilkiink
*n*n*lyffk


Frame B:
---x*TITLXNIHQDPKYFAIDXQFLVGTGLMVSPVXTQGXTTVNAYFPNDXWYEYGNGS
LVQSVGTHQTLNAPFDVINVHMRGGNIIPTQPTSSYVTPVDGIPITTKISRTLPFELIIA
LDSSLQATGQLFLDDGESIQTYVDNKYSFIQFDVVSSPSSSAYKLQSTILNNNYNGTASL
IINSIQIYGSPSVQQVIVNGSPINSFNAVSDSTLSVSNLQLALDESFEVDFVLY*klstn
kikisyifl


Frame C:
---vrpllxgisirixntlqlixnf*lvqv*wyhqxslkvxpq*mltsqmixgmnmvmvh
wfnqlvpikl*mlhsm*stficvvvisfqlnqpphmlhqlmvfqlplkslelyhln*llp
wilhykqlvnyswmmvnqfkpmliintlsfnsmlsphhlhlptnynqpfsitiimvpll*
slilskstvrhqfnksllmvaqsihlmlfliqlslfqiynll*mnplklilyyiknyqqi
klklviff*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHA108 (VHA108Q) /CSM/VH/VHA1-A/VHA108Q.Seq.d/                       1409   0.0
AHA841 (AHA841Q) /CSM/AH/AHA8-B/AHA841Q.Seq.d/                       1346   0.0
CHR858 (CHR858Q) /CSM/CH/CHR8-C/CHR858Q.Seq.d/                       1340   0.0
CHR320 (CHR320Q) /CSM/CH/CHR3-A/CHR320Q.Seq.d/                       1332   0.0
CHH383 (CHH383Q) /CSM/CH/CHH3-D/CHH383Q.Seq.d/                       1332   0.0
SHJ811 (SHJ811Q) /CSM/SH/SHJ8-A/SHJ811Q.Seq.d/                       1318   0.0
SHG509 (SHG509Q) /CSM/SH/SHG5-A/SHG509Q.Seq.d/                       1318   0.0
SHC731 (SHC731Q) /CSM/SH/SHC7-B/SHC731Q.Seq.d/                       1308   0.0
CHM276 (CHM276Q) /CSM/CH/CHM2-D/CHM276Q.Seq.d/                       1306   0.0
CHF189 (CHF189Q) /CSM/CH/CHF1-D/CHF189Q.Seq.d/                       1302   0.0
own update 2002.12.20
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

EC761186|EC761186.1 PSE00006759 rw_mgpallid Polysphondylium pallidum cDNA, mRNA sequence.    64   6e-06  1
AM442726|AM442726.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X048820.5, clone ENTAV 115.    46   0.15   3
AM425927|AM425927.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X073648.5, clone ENTAV 115.    46   0.26   2
ED724685|ED724685.1 GM_WBb0079B18.f GM_WBb Glycine max genomic clone GM_WBb0079B18 5', genomic survey sequence.    48   0.34   1
AM474386|AM474386.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X199062.6, clone ENTAV 115.    48   0.34   1
AP005672|AP005672.1 Physcomitrella patens subsp. patens chloroplast DNA, complete genome.    48   0.34   1
EI359126|EI359126.1 GM_WBc0111L21.r GM_WBc Glycine max genomic clone GM_WBc0111L21 3', genomic survey sequence.    42   0.43   2
EB183627|EB183627.1 AHAH-aaa26d06.g1 Pristionchus_pacificus_L4_pDNR_LIB Pristionchus pacificus cDNA 5', mRNA sequence.    46   1.4    1
BQ700810|BQ700810.1 NXRV111_F07_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA clone NXRV111_F07 5', mRNA sequence.    46   1.4    1
AC177571|AC177571.2 Bos taurus clone CH240-382D15, *** SEQUENCING IN PROGRESS ***, 19 unordered pieces.    46   1.4    1
dna update 2007. 3.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF118226_1(AF118226|pid:none) Hordeum vulgare high pI alpha-gluc...   119   1e-25
AB000967_1(AB000967|pid:none) Coturnix japonica GAAI mRNA for ac...   118   2e-25
(Q43763) RecName: Full=Alpha-glucosidase;          EC=3.2.1.20; ...   117   4e-25
EU937530_1(EU937530|pid:none) Mus musculus sucrase-isomaltase mR...   117   5e-25
AB057452_1(AB057452|pid:none) Physcomitrella patens subsp. paten...   115   1e-24
AF016833_1(AF016833|pid:none) Homo sapiens maltase-glucoamylase ...   114   3e-24
L25926_1(L25926|pid:none) Rat sucrase-isomaltase (SI) mRNA, comp...   113   6e-24
(P23739) RecName: Full=Sucrase-isomaltase, intestinal; Contains:...   113   6e-24
(O43451) RecName: Full=Maltase-glucoamylase, intestinal; Include...   112   1e-23
AM430903_1(AM430903|pid:none) Vitis vinifera contig VV78X052784....   111   2e-23
protein update 2009. 6.26
PSORT 

 psg: 0.75  gvh: 0.57  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 24.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: Golgi

>> prediction for VHA108 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VHA108Z
3' end seq. 
>VHA108Z.Seq
NNNNNNNNNNGTNGTTAGACCATTACTCTTNGGAATATCCATCAGGATCCNAAATACTTT
GCAATTGATCANCAATTTTTAGTTGGTACAGGTTTAATGGTATCACCAGTTNTCACTCAA
GGTGNTACCACAGTGAATGCTTACTTCCCAAATGATATNTGGTATGAATATGGTAATGGT
TCATTGGTTCAATCAGTTGGTACCCATCAAACTTTAAATGCTCCATTCGATGTAATCAAC
GTTCATATGCGTGGTGGTAATATCATTCCAACTCAACCAACCTCCTCATATGTTACACCA
GTTGATGGTATTCCAATTACCACTAAAATCTCTAGAACTTTACCATTTGAATTGATTATT
GCCTTGGATTCTTCATTACAAGCAACTGGTCAATTATTCTTGGATGATGGTGAATCAATT
CAAACCTATGTTGATAATAAATACTCTTTCATTCAATTCGATGTTGTCTCCTCACCATCT
TCATCTGCCTACAAATTACAATCAACCATTCTCAATAACAATTATAATGGTACCGCTTCT
TTAATCATTAATTCTATCCAAATCTACGGTTCGCCATCAGTTCAACAAGTCATTGTTAAT
GGTAGCCCAATCAATTCATTTAATGCTGTTTCTGATTCAACTCTCTCTGTTTCAAATTTA
CAACTTGCTTTAGATGAATCCTTTGAAGTTGATTTTGTATTATATTAAAAATTATCAACA
AATAAAATTAAAATTAGTTATATTTTTTTAAA
Length of 3' end seq. 752
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -