VFO888
Library VF
(Link to library)
Clone ID VFO888
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U09552-1
Original site URL
Representative seq. ID VFO888E
(Link to Original site)
Representative DNA sequence
>VFO888 (VFO888Q) /CSM/VF/VFO8-D/VFO888Q.Seq.d/
GAAGTAGATAATGTTGAAGGAAGTGGAGAATGTTTAGTTTGTGAATTTATTTCAGAAAAG
ATTGTAACTTATTTAGAAGCAAATCAAACTGGAACTCAAATTTTACAATATTTAGATAAC
GATTGTAAACTCCTTAAATCTGATAACTGGATTTCAACATGTCAAAGTTTAATTCAAGAA
TATGAACCACAAATTATTGCAGTTGTTGAAGGATTCATGGCACCAAGTGAACTTTGTCAA
AAAATTAAATTCTGTTCATCATCATCATCAACCAATGATTTCGATTTTATTGGTAGTAGT
ACAACTGATTGTGAAATTTGTACATTTATTTCAGGATATGCTGAAAATTTCTTGGAAGAA
AATAAAACACTTGAAGATATAATTAAAGTTGTTGATGATTTCTGTAAAATTCTTCCCAGC
TGCTTATAAAACTGATTGTGTAGCTATGGCTTCTAATTATATTCCAGCAATTATTAAAAT
GTTGGAAAATGATAATTCACCAGGTCAAGTTTGTCAAAAACTTAATCTTTGTCCAGCACC
AACTCCAACTTCAACACCTTCAACAATCAAGATTGATGTGAATATTAATAAATGTGAAAT
TTGTGAAACTGTAATTGGTTTTGCTGAAAAATATTTAGGTTCAGCATTAGATTCTCAAAC
TGTAAAGACATTCCTCCAAAATGAATGTAACAAACTTCCAGGTGTTGTTGGTGATGTTTG
TAATGAAGTTGTAAATGAATATCTTGAATTTGCAGTCACTCAACTCGAAGCTAAATTTAA
CCCAACTGAAATTTGTCAATTATTTTCATTCTGTACTGCTGGATCTGAATCATCAGATGC
ATCTGAAATCAAAATTAATAACAACTCATATATTGATTGTCAAATTTGTGAAGTTTTAGC
AAATTTCGTAGTCTATGATAAGAATTATACAACTCATTTCGAAGATAAACTCAATAAA
sequence update 2001.11.24
Translated Amino Acid sequence
k*imlkevenv*fvnlfqkrl*li*kqiklelkfyni*itivnslnlitgfqhvkv*fkn
mnhkllqllkdswhqvnfvkklnsvhhhhqpmisillvvvqlivkfvhlfqdmlkiswkk
ikhlki*LKLLMISVKFFPAAYKTDCVAMASNYIPAIIKMLENDNSPGQVCQKLNLCPAP
TPTSTPSTIKIDVNINKCEICETVIGFAEKYLGSALDSQTVKTFLQNECNKLPGVVGDVC
NEVVNEYLEFAVTQLEAKFNPTEICQLFSFCTAGSESSDASEIKINNNSYIDCQICEVLA
NFVVYDKNYTTHFEDKLNK


Translated Amino Acid sequence (All Frames)
Frame A:
evdnvegsgeclvcefisekivtyleanqtgtqilqyldndckllksdnwistcqsliqe
yepqiiavvegfmapselcqkikfcssssstndfdfigssttdceictfisgyaenflee
nktlediikvvddfckilpscl*n*lcsygf*lyssny*nvgk**ftrsslskt*slsst
nsnfntfnnqd*cey**m*nl*ncnwfc*kifrfsirfsnckdippk*m*qtsrccw*cl
**sck*is*icshstrs*i*pn*nlsiifilycwi*iirci*nqn**qliy*lsnl*sfs
kfrsl**elynsfrr*tq*


Frame B:
k*imlkevenv*fvnlfqkrl*li*kqiklelkfyni*itivnslnlitgfqhvkv*fkn
mnhkllqllkdswhqvnfvkklnsvhhhhqpmisillvvvqlivkfvhlfqdmlkiswkk
ikhlki*LKLLMISVKFFPAAYKTDCVAMASNYIPAIIKMLENDNSPGQVCQKLNLCPAP
TPTSTPSTIKIDVNINKCEICETVIGFAEKYLGSALDSQTVKTFLQNECNKLPGVVGDVC
NEVVNEYLEFAVTQLEAKFNPTEICQLFSFCTAGSESSDASEIKINNNSYIDCQICEVLA
NFVVYDKNYTTHFEDKLNK


Frame C:
sr*c*rkwrmfsl*iyfrkdcnlfrsksnwnsnftifr*rl*tp*i**ldfnmskfnsri
*ttnycsc*rihgtk*tlskn*ilfiiiinq*frfyw**yn*l*nlyiyfric*kflgrk
*nt*ryn*sc**fl*nssqllikliv*lwlliifqqllkcwkmiihqvkfvknlifvqhq
lqlqhlqqsrlm*ilinvkfvkl*lvllkni*vqh*ilkl*rhsskmnvtnfqvllvmfv
mkl*mnilnlqslnsklnltqlkfvnyfhsvlldlnhqmhlksklitthilivkfvkf*q
is*smiriiqliskinsi


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFO888 (VFO888Q) /CSM/VF/VFO8-D/VFO888Q.Seq.d/ 1899 0.0
VFB595 (VFB595Q) /CSM/VF/VFB5-D/VFB595Q.Seq.d/ 1836 0.0
VFB732 (VFB732Q) /CSM/VF/VFB7-B/VFB732Q.Seq.d/ 1074 0.0
VFJ635 (VFJ635Q) /CSM/VF/VFJ6-B/VFJ635Q.Seq.d/ 1055 0.0
VFG662 (VFG662Q) /CSM/VF/VFG6-C/VFG662Q.Seq.d/ 1017 0.0
VFH555 (VFH555Q) /CSM/VF/VFH5-C/VFH555Q.Seq.d/ 1003 0.0
VFD617 (VFD617Q) /CSM/VF/VFD6-A/VFD617Q.Seq.d/ 999 0.0
VFM205 (VFM205Q) /CSM/VF/VFM2-A/VFM205Q.Seq.d/ 977 0.0
VFH580 (VFH580Q) /CSM/VF/VFH5-D/VFH580Q.Seq.d/ 959 0.0
VFI241 (VFI241Q) /CSM/VF/VFI2-B/VFI241Q.Seq.d/ 940 0.0

own update 2001.12. 5
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ436372) Dictyostelium discoideum cDNA clone:ddv30p22, 3' ... 1156 0.0 1
(U66367) Dictyostelium discoideum SapA (sapA) mRNA, partial ... 1076 0.0 2
(BJ411563) Dictyostelium discoideum cDNA clone:ddv4m23, 5' e... 785 0.0 2
(BJ429662) Dictyostelium discoideum cDNA clone:ddv4p07, 3' e... 1074 0.0 1
(BJ417549) Dictyostelium discoideum cDNA clone:ddv30p22, 5' ... 825 0.0 2
(BJ432939) Dictyostelium discoideum cDNA clone:ddv20e10, 3' ... 1055 0.0 1
(BJ431567) Dictyostelium discoideum cDNA clone:ddv14k16, 3' ... 1017 0.0 1
(BJ430620) Dictyostelium discoideum cDNA clone:ddv8a06, 3' e... 999 0.0 1
(BJ434365) Dictyostelium discoideum cDNA clone:ddv16m13, 3' ... 896 0.0 2
(BJ434831) Dictyostelium discoideum cDNA clone:ddv25i02, 3' ... 805 0.0 2
dna update 2009. 6. 4
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

U66367_1(U66367|pid:none) Dictyostelium discoideum SapA (sapA) m... 348 e-172
BC054988_1(BC054988|pid:none) Xenopus laevis hypothetical protei... 67 3e-15
DQ062781_1(DQ062781|pid:none) Drosophila simulans saposin-relate... 55 9e-15
BC080997_1(BC080997|pid:none) Xenopus laevis MGC80725 protein, m... 64 9e-15
AF108656_1(AF108656|pid:none) Gallus gallus prosaposin mRNA, com... 62 2e-13
(O13035) RecName: Full=Proactivator polypeptide; Contains: Rec... 62 2e-13
BT045905_1(BT045905|pid:none) Salmo salar clone ssal-rgf-536-147... 56 4e-13
AK223290_1(AK223290|pid:none) Homo sapiens mRNA for prosaposin (... 64 5e-13
(Q6IBQ6) RecName: Full=Proactivator polypeptide; Contains: Rec... 64 5e-13
AY892719_1(AY892719|pid:none) Synthetic construct Homo sapiens c... 64 5e-13
protein update 2009. 7.11
PSORT

psg: 0.78 gvh: 0.40 alm: 0.43 top: 0.53 tms: 0.00 mit: 0.30 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: nuclear
24.0 %: cytoplasmic
20.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: peroxisomal

>> prediction for VFO888 is nuc

5' end seq. ID VFO888F
5' end seq.
>VFO888F.Seq
GAAGTAGATAATGTTGAAGGAAGTGGAGAATGTTTAGTTTGTGAATTTATTTCAGAAAAG
ATTGTAACTTATTTAGAAGCAAATCAAACTGGAACTCAAATTTTACAATATTTAGATAAC
GATTGTAAACTCCTTAAATCTGATAACTGGATTTCAACATGTCAAAGTTTAATTCAAGAA
TATGAACCACAAATTATTGCAGTTGTTGAAGGATTCATGGCACCAAGTGAACTTTGTCAA
AAAATTAAATTCTGTTCATCATCATCATCAACCAATGATTTCGATTTTATTGGTAGTAGT
ACAACTGATTGTGAAATTTGTACATTTATTTCAGGATATGCTGAAAATTTCTTGGAAGAA
AATAAAACACTTGAAGATATAATTAAAGTTGTTGATGATTTCTGTAAAATTCTTCCAGCT
GCTTATAAAACTGATTGTGTAGCTATGGCTTCTAATTATATTCCAGCAATTATTAAAATG
TTGGAAAATGATAATTCACCAGGTCAAGTTTGTCAAAAACTTAATCTTTGTCCAGCACCA
ACTNNNNNNNNNN
Length of 5' end seq. 553
3' end seq. ID VFO888Z
3' end seq.
>VFO888Z.Seq
NNNNNNNNNNGATATAATTAAAGTTGTTGATGATTTCTGTAAAATTCTTCCCAGCTGCTT
ATAAAACTGATTGTGTAGCTATGGCTTCTAATTATATTCCAGCAATTATTAAAATGTTGG
AAAATGATAATTCACCAGGTCAAGTTTGTCAAAAACTTAATCTTTGTCCAGCACCAACTC
CAACTTCAACACCTTCAACAATCAAGATTGATGTGAATATTAATAAATGTGAAATTTGTG
AAACTGTAATTGGTTTTGCTGAAAAATATTTAGGTTCAGCATTAGATTCTCAAACTGTAA
AGACATTCCTCCAAAATGAATGTAACAAACTTCCAGGTGTTGTTGGTGATGTTTGTAATG
AAGTTGTAAATGAATATCTTGAATTTGCAGTCACTCAACTCGAAGCTAAATTTAACCCAA
CTGAAATTTGTCAATTATTTTCATTCTGTACTGCTGGATCTGAATCATCAGATGCATCTG
AAATCAAAATTAATAACAACTCATATATTGATTGTCAAATTTGTGAAGTTTTAGCAAATT
TCGTAGTCTATGATAAGAATTATACAACTCATTTCGAAGATAAACTCAATAAA
Length of 3' end seq. 593
Connected seq. ID VFO888P
Connected seq.
>VFO888P.Seq
GAAGTAGATAATGTTGAAGGAAGTGGAGAATGTTTAGTTTGTGAATTTATTTCAGAAAAG
ATTGTAACTTATTTAGAAGCAAATCAAACTGGAACTCAAATTTTACAATATTTAGATAAC
GATTGTAAACTCCTTAAATCTGATAACTGGATTTCAACATGTCAAAGTTTAATTCAAGAA
TATGAACCACAAATTATTGCAGTTGTTGAAGGATTCATGGCACCAAGTGAACTTTGTCAA
AAAATTAAATTCTGTTCATCATCATCATCAACCAATGATTTCGATTTTATTGGTAGTAGT
ACAACTGATTGTGAAATTTGTACATTTATTTCAGGATATGCTGAAAATTTCTTGGAAGAA
AATAAAACACTTGAAGATATAATTAAAGTTGTTGATGATTTCTGTAAAATTCTTCCAGCT
GCTTATAAAACTGATTGTGTAGCTATGGCTTCTAATTATATTCCAGCAATTATTAAAATG
TTGGAAAATGATAATTCACCAGGTCAAGTTTGTCAAAAACTTAATCTTTGTCCAGCACCA
ACT----------GATATAATTAAAGTTGTTGATGATTTCTGTAAAATTCTTCCCAGCTG
CTTATAAAACTGATTGTGTAGCTATGGCTTCTAATTATATTCCAGCAATTATTAAAATGT
TGGAAAATGATAATTCACCAGGTCAAGTTTGTCAAAAACTTAATCTTTGTCCAGCACCAA
CTCCAACTTCAACACCTTCAACAATCAAGATTGATGTGAATATTAATAAATGTGAAATTT
GTGAAACTGTAATTGGTTTTGCTGAAAAATATTTAGGTTCAGCATTAGATTCTCAAACTG
TAAAGACATTCCTCCAAAATGAATGTAACAAACTTCCAGGTGTTGTTGGTGATGTTTGTA
ATGAAGTTGTAAATGAATATCTTGAATTTGCAGTCACTCAACTCGAAGCTAAATTTAACC
CAACTGAAATTTGTCAATTATTTTCATTCTGTACTGCTGGATCTGAATCATCAGATGCAT
CTGAAATCAAAATTAATAACAACTCATATATTGATTGTCAAATTTGTGAAGTTTTAGCAA
ATTTCGTAGTCTATGATAAGAATTATACAACTCATTTCGAAGATAAACTCAATAAA
Length of connected seq. 1126
Full length Seq ID VFO888E
Full length Seq.
>VFO888E.Seq
GAAGTAGATAATGTTGAAGGAAGTGGAGAATGTTTAGTTTGTGAATTTATTTCAGAAAAG
ATTGTAACTTATTTAGAAGCAAATCAAACTGGAACTCAAATTTTACAATATTTAGATAAC
GATTGTAAACTCCTTAAATCTGATAACTGGATTTCAACATGTCAAAGTTTAATTCAAGAA
TATGAACCACAAATTATTGCAGTTGTTGAAGGATTCATGGCACCAAGTGAACTTTGTCAA
AAAATTAAATTCTGTTCATCATCATCATCAACCAATGATTTCGATTTTATTGGTAGTAGT
ACAACTGATTGTGAAATTTGTACATTTATTTCAGGATATGCTGAAAATTTCTTGGAAGAA
AATAAAACACTTGAAGATATAATTAAAGTTGTTGATGATTTCTGTAAAATTCTTCCCAGC
TGCTTATAAAACTGATTGTGTAGCTATGGCTTCTAATTATATTCCAGCAATTATTAAAAT
GTTGGAAAATGATAATTCACCAGGTCAAGTTTGTCAAAAACTTAATCTTTGTCCAGCACC
AACTCCAACTTCAACACCTTCAACAATCAAGATTGATGTGAATATTAATAAATGTGAAAT
TTGTGAAACTGTAATTGGTTTTGCTGAAAAATATTTAGGTTCAGCATTAGATTCTCAAAC
TGTAAAGACATTCCTCCAAAATGAATGTAACAAACTTCCAGGTGTTGTTGGTGATGTTTG
TAATGAAGTTGTAAATGAATATCTTGAATTTGCAGTCACTCAACTCGAAGCTAAATTTAA
CCCAACTGAAATTTGTCAATTATTTTCATTCTGTACTGCTGGATCTGAATCATCAGATGC
ATCTGAAATCAAAATTAATAACAACTCATATATTGATTGTCAAATTTGTGAAGTTTTAGC
AAATTTCGTAGTCTATGATAAGAATTATACAACTCATTTCGAAGATAAACTCAATAAA
Length of full length seq. 958