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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFO754
Library VF
(Link to library)
Clone ID VFO754
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U09246-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>VFO754 (VFO754Q) /CSM/VF/VFO7-C/VFO754Q.Seq.d/
XXXXXXXXXXGGCAGAACCACANTGAATCTTGCCACCGGTAGCACCAATAGTGGTCCAGA
TTATGTAAATTGGCATGCAAGTTTAATGTTGGTTGCATTTGGTTTATTGATGCCATTCAG
TATTTTCAGTGNCCGTTTCTTAAAAGTTTTCCANTGGTGGTGGCCNCTTCATTACGTTTT
CAATGGTTTGGCATCAGTTTGCGCTTTAATTGGCTTCATCATTGCAATTGTCATGTTGGA
TGGTTTGNATTTCTNAACACTTCATAGTATTTTTGGTATAACNTACATTATGTTTGGTAT
TGGTTTCAATTCTATTTGGTGCACTTTNTCACTTCCTTTGGAANCCAACTAGAGTTGGNA
CTCCAATTTTCCNTGATATGTTCCATTGGTTCGTTGGTCGTTGTACATTTGCTTTATCNA
TTGCTGCNATCATCNCTGGTATGGTACTTCACCAAGTTCCANCCGCTGTTATCA
sequence update 2001.11.22
Translated Amino Acid sequence 
---RTTXNLATGSTNSGPDYVNWHASLMLVAFGLLMPFSIFSXRFLKVFXWWWPLHYVFN
GLASVCALIGFIIAIVMLDGLXFXTLHSIFGITYIMFGIGFNSIWCTXSLPLEXN*swxs
nfp*yvplvrwslyicfixccxhxwygtspssxrcy
Translated Amino Acid sequence (All Frames) 
Frame A:
---aepx*ilppvapivvqim*igmqv*cwlhlvy*chsvfsvxvs*kfsxgggxfitfs
mvwhqfal*lasslqlscwmvxisxhfivflv*xtlclvlvsilfgalxhflwxptrvgt
pifxdmfhwfvgrctfalsiaaiixgmvlhqvpxavi


Frame B:
---qnhxeschr*hq*wsrlcklackfnvgciwfidaiqyfqxpflksfpxvvaxslrfq
wfgislrfnwlhhcnchvgwfxflnts*yfwynxhyvwywfqfylvhfxtsfgxqlelxl
qfsxicsigslvvvhllyxllxsslvwyftkfxplls


Frame C:
---RTTXNLATGSTNSGPDYVNWHASLMLVAFGLLMPFSIFSXRFLKVFXWWWPLHYVFN
GLASVCALIGFIIAIVMLDGLXFXTLHSIFGITYIMFGIGFNSIWCTXSLPLEXN*swxs
nfp*yvplvrwslyicfixccxhxwygtspssxrcy
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFO754 (VFO754Q) /CSM/VF/VFO7-C/VFO754Q.Seq.d/                        831   0.0
VFM418 (VFM418Q) /CSM/VF/VFM4-A/VFM418Q.Seq.d/                        777   0.0
VFD369 (VFD369Q) /CSM/VF/VFD3-C/VFD369Q.Seq.d/                        753   0.0
VFI841 (VFI841Q) /CSM/VF/VFI8-B/VFI841Q.Seq.d/                        722   0.0
VFG363 (VFG363Q) /CSM/VF/VFG3-C/VFG363Q.Seq.d/                        716   0.0
SLI779 (SLI779Q) /CSM/SL/SLI7-D/SLI779Q.Seq.d/                        278   7e-74
VFN452 (VFN452Q) /CSM/VF/VFN4-C/VFN452Q.Seq.d/                        232   4e-60
VFM867 (VFM867Q) /CSM/VF/VFM8-C/VFM867Q.Seq.d/                         46   5e-04
VFM795 (VFM795Q) /CSM/VF/VFM7-D/VFM795Q.Seq.d/                         46   5e-04
VFH544 (VFH544Q) /CSM/VF/VFH5-B/VFH544Q.Seq.d/                         46   5e-04
own update 2004. 8. 1
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ436275) Dictyostelium discoideum cDNA clone:ddv30l13, 3' ...   827   0.0    1
(BJ434810) Dictyostelium discoideum cDNA clone:ddv25d06, 3' ...   466   0.0    2
(BJ430540) Dictyostelium discoideum cDNA clone:ddv7j17, 3' e...   480   0.0    2
(BJ432287) Dictyostelium discoideum cDNA clone:ddv18b12, 3' ...   626   0.0    2
(BJ431303) Dictyostelium discoideum cDNA clone:ddv13n15, 3' ...   402   0.0    2
(AU053499) Dictyostelium discoideum slug cDNA, clone SLI779.      278   2e-70  1
(BJ435584) Dictyostelium discoideum cDNA clone:ddv27h14, 3' ...   170   5e-56  2
(DE346582) Bombyx mori genomic DNA, BAC clone:BET_052_F19.         48   0.30   1
(DE313457) Bombyx mori genomic DNA, BAC clone:BES_096_F24.         48   0.30   1
(DE300652) Bombyx mori genomic DNA, BAC clone:BES_055_H06.         48   0.30   1
dna update 2009. 6. 2
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM486046_2(AM486046|pid:none) Vitis vinifera contig VV78X042566....    50   2e-07
AB005232_9(AB005232|pid:none) Arabidopsis thaliana genomic DNA, ...    46   5e-04
AP003407_38(AP003407|pid:none) Oryza sativa Japonica Group genom...    44   0.001
AP003316_19(AP003316|pid:none) Oryza sativa Japonica Group genom...    44   0.001
BT038895_1(BT038895|pid:none) Zea mays full-length cDNA clone ZM...    40   0.026
AP005453_5(AP005453|pid:none) Oryza sativa Japonica Group genomi...    40   0.026
CP001325_431(CP001325|pid:none) Micromonas sp. RCC299 chromosome...    40   0.034
AM260479_2933(AM260479|pid:none) Ralstonia eutropha H16 chromoso...    39   0.058
EF147130_1(EF147130|pid:none) Populus trichocarpa clone WS01228_...    37   0.091
EU955886_1(EU955886|pid:none) Zea mays clone 1550443 membrane pr...    37   0.22
protein update 2009. 6.26
PSORT 

 psg: 0.80  gvh: 0.62  alm: 0.15  top: 0.73  tms: 0.13  mit: 0.39  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 1.00  m_ : 0.00 

	 28.0 %: endoplasmic reticulum
	 16.0 %: nuclear
	 16.0 %: vacuolar
	 16.0 %: plasma membrane
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: cytoplasmic

>> prediction for VFO754 is end
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VFO754Z
3' end seq. 
>VFO754Z.Seq
NNNNNNNNNNGGCAGAACCACANTGAATCTTGCCACCGGTAGCACCAATAGTGGTCCAGA
TTATGTAAATTGGCATGCAAGTTTAATGTTGGTTGCATTTGGTTTATTGATGCCATTCAG
TATTTTCAGTGNCCGTTTCTTAAAAGTTTTCCANTGGTGGTGGCCNCTTCATTACGTTTT
CAATGGTTTGGCATCAGTTTGCGCTTTAATTGGCTTCATCATTGCAATTGTCATGTTGGA
TGGTTTGNATTTCTNAACACTTCATAGTATTTTTGGTATAACNTACATTATGTTTGGTAT
TGGTTTCAATTCTATTTGGTGCACTTTNTCACTTCCTTTGGAANCCAACTAGAGTTGGNA
CTCCAATTTTCCNTGATATGTTCCATTGGTTCGTTGGTCGTTGTACATTTGCTTTATCNA
TTGCTGCNATCATCNCTGGTATGGTACTTCACCAAGTTCCANCCGCTGTTATCA
Length of 3' end seq. 474
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -