VFO694
Library VF
(Link to library)
Clone ID VFO694
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16504-1
Original site URL
Representative seq. ID VFO694E
(Link to Original site)
Representative DNA sequence
>VFO694 (VFO694Q) /CSM/VF/VFO6-D/VFO694Q.Seq.d/
TTTTATTTTATTTTATTTTTATTTTTTAAAGAAATAATTTTTTATAAAAAAAGAATGGAA
GAAATAAAAGAAACTGTTGAAAAAAAAAATAAAGAAAAAAAGTTTTTAAATGATTNTAAA
ATAATTTCTGANGGTAATAATATTAAAGTTTTNCAAAAAAAAGATTTCAANCCAAAATTT
TCATTGGTNTCATNTAAAAATTNTGAACAAAATTTTGATTTTGAAAATGCTAAAATTGTT
TCAACCAATTTTGCCATCGATCGTCATNTAAAGATGAANAATCCACCAGATCCATTTGTA
TTTATTAAAATGCCATCTTCAAAGCTTGTTCAAAGTCAGTTAAAACTTTACTATGAAAAT
GAAGGTTATAAGGATATTCCAGTATGGATTACACCATGTTCAGCATTTATGAGATACATT
AAATCGTATCCAATTGTTGGAACTGTAACAGAGACAATGGAAAAGAAAAAAGGTTTCACC
AATAGATTNTTATCAACTAGTGAAACCAAAGCATCAGTTTCAGTCGGATTCTTTGGTTGT
GAATCATCGATGGAAGTTACAAGTGGTTATGAATATGAAGACACTGTTACATCTGAAGAA
ACTAGAAGTTGGAGTCAAACTTTAAATGAAGGTTCTTATATTGTTTATCAAAACGTTTTA
GTTTATGCTTATATAATCTATGGTGGTAGTTATAAACCATACATTGATCNAATGAATAAA
TTTAATCCTGGATTAAATATCNAATTCTTTAGAGAAGATAAATGNATCAANTTTGNACCN
ATTAATCGTGATGATGCCTTCACTCTTCGTTATCAAGATAATACATGGGATCCAGTTGAA
TATGATGTTTTAATTGATTACTTGGGTCAAAATCANGATAAATGGTTTTCC
sequence update 2001.11.24
Translated Amino Acid sequence
FYFILFLFFKEIIFYKKRMEEIKETVEKKNKEKKFLNDXKIISXGNNIKVXQKKDFXPKF
SLVSXKNXEQNFDFENAKIVSTNFAIDRHXKMXNPPDPFVFIKMPSSKLVQSQLKLYYEN
EGYKDIPVWITPCSAFMRYIKSYPIVGTVTETMEKKKGFTNRXLSTSETKASVSVGFFGC
ESSMEVTSGYEYEDTVTSEETRSWSQTLNEGSYIVYQNVLVYAYIIYGGSYKPYIDXMNK
FNPGLNIXFFREDKXIXFXPINRDDAFTLRYQDNTWDPVEYDVLIDYLGQNXDKWFS


Translated Amino Acid sequence (All Frames)
Frame A:
FYFILFLFFKEIIFYKKRMEEIKETVEKKNKEKKFLNDXKIISXGNNIKVXQKKDFXPKF
SLVSXKNXEQNFDFENAKIVSTNFAIDRHXKMXNPPDPFVFIKMPSSKLVQSQLKLYYEN
EGYKDIPVWITPCSAFMRYIKSYPIVGTVTETMEKKKGFTNRXLSTSETKASVSVGFFGC
ESSMEVTSGYEYEDTVTSEETRSWSQTLNEGSYIVYQNVLVYAYIIYGGSYKPYIDXMNK
FNPGLNIXFFREDKXIXFXPINRDDAFTLRYQDNTWDPVEYDVLIDYLGQNXDKWFS


Frame B:
filfyfyflkk*ffikkewkk*kkllkkkikkksf*mixk*flxviilkfxkkkisxqnf
hwxhxkixnkililkmlklfqpilpsivx*r*xihqihlyllkchlqslfkvs*nftmkm
kvirifqyglhhvqhl*dtlnriqllel*qrqwkrkkvspidxyqlvkpkhqfqsdslvv
nhrwklqvvmnmktllhlkklevgvkl*mkvlilfiktf*fmli*smvvvinhtlix*in
lild*isnslekinxsxlxxlivmmpslfvikiihgiqlnmmf*litwvkixingf


Frame C:
lfyfifif*rnnfl*kkngrnkrnc*kkk*rkkvfk*x*nnf*x**y*sfxkkrfqxkif
igxx*kx*tkf*f*kc*ncfnqfchrssxkdexstrsiciy*naifkacsksvktll*k*
rl*gyssmdytmfsiyeih*ivsncwncnrdngkekrfhq*ixin**nqsisfsrilwl*
iidgsykwl*i*rhcyi*rn*klesnfk*rflyclskrfslclynlww*l*tih*sne*i
*swikyxil*rr*mxqxxtx*s**clhsslsr*ymgss*i*cfn*llgsksx*mvf


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFO694 (VFO694Q) /CSM/VF/VFO6-D/VFO694Q.Seq.d/ 1417 0.0
VSJ730 (VSJ730Q) /CSM/VS/VSJ7-B/VSJ730Q.Seq.d/ 1394 0.0
VSD543 (VSD543Q) /CSM/VS/VSD5-B/VSD543Q.Seq.d/ 1394 0.0
VFJ763 (VFJ763Q) /CSM/VF/VFJ7-C/VFJ763Q.Seq.d/ 1394 0.0
VFI758 (VFI758Q) /CSM/VF/VFI7-C/VFI758Q.Seq.d/ 1394 0.0
VFC716 (VFC716Q) /CSM/VF/VFC7-A/VFC716Q.Seq.d/ 1394 0.0
VSI168 (VSI168Q) /CSM/VS/VSI1-C/VSI168Q.Seq.d/ 1386 0.0
VHP648 (VHP648Q) /CSM/VH/VHP6-B/VHP648Q.Seq.d/ 1386 0.0
VSF255 (VSF255Q) /CSM/VS/VSF2-C/VSF255Q.Seq.d/ 1380 0.0
VHB403 (VHB403Q) /CSM/VH/VHB4-A/VHB403Q.Seq.d/ 1376 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ437057) Dictyostelium discoideum cDNA clone:ddv33f02, 3' ... 1265 0.0 1
(BJ446356) Dictyostelium discoideum cDNA clone:ddv62o12, 3' ... 1255 0.0 1
(U48706) Dictyostelium discoideum small aggregate formation ... 1189 0.0 4
(BJ436350) Dictyostelium discoideum cDNA clone:ddv30k24, 3' ... 1154 0.0 1
(BJ431991) Dictyostelium discoideum cDNA clone:ddv17c11, 3' ... 1144 0.0 1
(BJ432381) Dictyostelium discoideum cDNA clone:ddv18d15, 3' ... 1126 0.0 1
(BJ433068) Dictyostelium discoideum cDNA clone:ddv20n15, 3' ... 1102 0.0 1
(BJ430140) Dictyostelium discoideum cDNA clone:ddv6p03, 3' e... 1082 0.0 1
(C90354) Dictyostelium discoideum slug cDNA, clone SSI291. 1066 0.0 3
(C90264) Dictyostelium discoideum slug cDNA, clone SSI515. 1068 0.0 1
dna update 2009. 6. 1
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC116330_42(AC116330|pid:none) Dictyostelium discoideum chromoso... 59 3e-07
AC116330_41(AC116330|pid:none) Dictyostelium discoideum chromoso... 44 0.010
CP001083_1669(CP001083|pid:none) Clostridium botulinum Ba4 str. ... 39 0.31
CP000712_1048(CP000712|pid:none) Pseudomonas putida F1, complete... 38 0.52
CP000681_3151(CP000681|pid:none) Shewanella putrefaciens CN-32, ... 34 5.8
CP000932_787(CP000932|pid:none) Campylobacter lari RM2100, compl... 34 5.8
AE001362_167(AE001362|pid:none) Plasmodium falciparum 3D7 chromo... 33 9.9

protein update 2009. 7.11
PSORT

psg: 0.58 gvh: 0.35 alm: 0.42 top: 0.53 tms: 0.00 mit: 0.18 mip: 0.00
nuc: 0.13 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: cytoplasmic
36.0 %: nuclear
4.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: peroxisomal

>> prediction for VFO694 is cyt

5' end seq. ID VFO694F
5' end seq.
>VFO694F.Seq
TTTTATTTTATTTTATTTTTATTTTTTAAAGAAATAATTTTTTATAAAAAAAGAATGGAA
GAAATAAAAGAAACTGTTGAAAAAAAAAATAAAGAAAAAAAGTTTTTAAATGATTNTAAA
ATAATTTCTGANGGTAATAATATTAAAGTTTTNCAAAAAAAAGATTTCAANCCAAAATTT
TCATTGGTNTCATNTAAAAATTNTGAACAAAATTTTGATTTTGAAAATGCTAAAATTGTT
TCAACCAATTTTGCCATCGATCGTCATNTAAAGATGAANAATCCACCAGATCCATTTGTN
TTTATTAAAATGCCATNTTCAAAGCTTGTTCAAAGTCAGTTAAAACTTTACTNTGAAAAT
GAAGGTTNTAAGGATNTTCCAGTNTNNNNNNNNNN
Length of 5' end seq. 395
3' end seq. ID VFO694Z
3' end seq.
>VFO694Z.Seq
NNNNNNNNNNCCAGATCCATTTGTATTTATTAAAATGCCATCTTCAAAGCTTGTTCAAAG
TCAGTTAAAACTTTACTATGAAAATGAAGGTTATAAGGATATTCCAGTATGGATTACACC
ATGTTCAGCATTTATGAGATACATTAAATCGTATCCAATTGTTGGAACTGTAACAGAGAC
AATGGAAAAGAAAAAAGGTTTCACCAATAGATTNTTATCAACTAGTGAAACCAAAGCATC
AGTTTCAGTCGGATTCTTTGGTTGTGAATCATCGATGGAAGTTACAAGTGGTTATGAATA
TGAAGACACTGTTACATCTGAAGAAACTAGAAGTTGGAGTCAAACTTTAAATGAAGGTTC
TTATATTGTTTATCAAAACGTTTTAGTTTATGCTTATATAATCTATGGTGGTAGTTATAA
ACCATACATTGATCNAATGAATAAATTTAATCCTGGATTAAATATCNAATTCTTTAGAGA
AGATAAATGNATCAANTTTGNACCNATTAATCGTGATGATGCCTTCACTCTTCGTTATCA
AGATAATACATGGGATCCAGTTGAATATGATGTTTTAATTGATTACTTGGGTCAAAATCA
NGATAAATGGTTTTCC
Length of 3' end seq. 616
Connected seq. ID VFO694P
Connected seq.
>VFO694P.Seq
TTTTATTTTATTTTATTTTTATTTTTTAAAGAAATAATTTTTTATAAAAAAAGAATGGAA
GAAATAAAAGAAACTGTTGAAAAAAAAAATAAAGAAAAAAAGTTTTTAAATGATTNTAAA
ATAATTTCTGANGGTAATAATATTAAAGTTTTNCAAAAAAAAGATTTCAANCCAAAATTT
TCATTGGTNTCATNTAAAAATTNTGAACAAAATTTTGATTTTGAAAATGCTAAAATTGTT
TCAACCAATTTTGCCATCGATCGTCATNTAAAGATGAANAATCCACCAGATCCATTTGTN
TTTATTAAAATGCCATNTTCAAAGCTTGTTCAAAGTCAGTTAAAACTTTACTNTGAAAAT
GAAGGTTNTAAGGATNTTCCAGTNT----------CCAGATCCATTTGTATTTATTAAAA
TGCCATCTTCAAAGCTTGTTCAAAGTCAGTTAAAACTTTACTATGAAAATGAAGGTTATA
AGGATATTCCAGTATGGATTACACCATGTTCAGCATTTATGAGATACATTAAATCGTATC
CAATTGTTGGAACTGTAACAGAGACAATGGAAAAGAAAAAAGGTTTCACCAATAGATTNT
TATCAACTAGTGAAACCAAAGCATCAGTTTCAGTCGGATTCTTTGGTTGTGAATCATCGA
TGGAAGTTACAAGTGGTTATGAATATGAAGACACTGTTACATCTGAAGAAACTAGAAGTT
GGAGTCAAACTTTAAATGAAGGTTCTTATATTGTTTATCAAAACGTTTTAGTTTATGCTT
ATATAATCTATGGTGGTAGTTATAAACCATACATTGATCNAATGAATAAATTTAATCCTG
GATTAAATATCNAATTCTTTAGAGAAGATAAATGNATCAANTTTGNACCNATTAATCGTG
ATGATGCCTTCACTCTTCGTTATCAAGATAATACATGGGATCCAGTTGAATATGATGTTT
TAATTGATTACTTGGGTCAAAATCANGATAAATGGTTTTCC
Length of connected seq. 991
Full length Seq ID VFO694E
Full length Seq.
>VFO694E.Seq
TTTTATTTTATTTTATTTTTATTTTTTAAAGAAATAATTTTTTATAAAAAAAGAATGGAA
GAAATAAAAGAAACTGTTGAAAAAAAAAATAAAGAAAAAAAGTTTTTAAATGATTNTAAA
ATAATTTCTGANGGTAATAATATTAAAGTTTTNCAAAAAAAAGATTTCAANCCAAAATTT
TCATTGGTNTCATNTAAAAATTNTGAACAAAATTTTGATTTTGAAAATGCTAAAATTGTT
TCAACCAATTTTGCCATCGATCGTCATNTAAAGATGAANAATCCACCAGATCCATTTGTA
TTTATTAAAATGCCATCTTCAAAGCTTGTTCAAAGTCAGTTAAAACTTTACTATGAAAAT
GAAGGTTATAAGGATATTCCAGTATGGATTACACCATGTTCAGCATTTATGAGATACATT
AAATCGTATCCAATTGTTGGAACTGTAACAGAGACAATGGAAAAGAAAAAAGGTTTCACC
AATAGATTNTTATCAACTAGTGAAACCAAAGCATCAGTTTCAGTCGGATTCTTTGGTTGT
GAATCATCGATGGAAGTTACAAGTGGTTATGAATATGAAGACACTGTTACATCTGAAGAA
ACTAGAAGTTGGAGTCAAACTTTAAATGAAGGTTCTTATATTGTTTATCAAAACGTTTTA
GTTTATGCTTATATAATCTATGGTGGTAGTTATAAACCATACATTGATCNAATGAATAAA
TTTAATCCTGGATTAAATATCNAATTCTTTAGAGAAGATAAATGNATCAANTTTGNACCN
ATTAATCGTGATGATGCCTTCACTCTTCGTTATCAAGATAATACATGGGATCCAGTTGAA
TATGATGTTTTAATTGATTACTTGGGTCAAAATCANGATAAATGGTTTTCC
Length of full length seq. 891