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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFO656
Library VF
(Link to library)
Clone ID VFO656
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15036-1
Original site URL
Representative seq. ID VFO656P
(Link to Original site)
Representative DNA sequence 
>VFO656 (VFO656Q) /CSM/VF/VFO6-C/VFO656Q.Seq.d/
CAAACTGATGCAGTTGCTGAAATACCTGTTGATAATCCAACATCAACATCAACTACTACT
ACTACTACAACTACATCAAATGCAACATCAATTTTATCAGCAATTCATACTTCAACAATT
AATAGTAATACATCATCACATAATAATAATCAACAACAGCAACAACAACAACAAACAATA
TTACCAACACAACCAACTATAATTAATACACCAACACCAGTTAGATCATCAGTATCAAGA
TCACAATCACCATTACCATCAGGTAATGGAAGTAGTATTATATCACAAGAAAAGACACCA
TTATCAACATTTGTACTTTCAACATGTAGACCATCAGCATTGGTATTGCCACCAGGTTCA
ACCATTGGTATTTTGGGTGGCGGTCAATTAGCAAGAATGATGGCTATTGCAGCAGCACAA
TTAGGTTATAAGACTCATATTTTCTGTCCAGAGAATGATCCATCCGCTTCACATGTTGCA
ACCTATACCACTAAATCAAACTATAACAACTATTCAGCATTGGACATTTTCGCAAGACAA
GTCGATGTTGTAACCTATGAATTTGAAAATATTATGGXXXXXXXXXXTTGGAAAAAGGTT
ACCTNTGAAACTTGTGCAACCAAAGCAATACTTGAACAATATATAGAGTTTGAATCAGAA
GCATCAGTTATTGTAGCACGTGCTTTAGATGGAACAGAGTTAACCTTCCCATTGGTTACC
AATAAACATTGTAATCATATTTTACGTCAAACCATTGCACCAGCTCAATTGCCAGAATAT
ATTCATAAACAAGCCAATGAAATTGGTTTAAAGATTGCTCGTTCCAATGGTTTGGTTGGT
ATTATTGCCGTCGAATTATTTGTAGTGAAAAACAATGAAACAGGTCAATACTCTTTAATG
GTAAATGAATTGGCACCAAGACCACACAATAGTGGTCATTGGACCATCGAAGGTTGTGTA
ACCTCTCAATTTGAACAATTGATTCGTTGTGTTTGTGGTTTGCCTTTGGGTTCAGTCGAT
TTCACTAAACGTATAAGTGAAGCTGAATTTATTCAACAACAAATTCCACCAATTGTAATG
ACAAATCTTTTAGGTCAAGAAGTTAACGGTTGGGAAAAAATACTTCAAACTAAAGGTTCA
CATCTTCATATCTATGCTAAAGGTGATGCAAAAGAAGGTCGTAAAA
sequence update 2001.11.22
Translated Amino Acid sequence 
QTDAVAEIPVDNPTSTSTTTTTTTTSNATSILSAIHTSTINSNTSSHNNNQQQQQQQQTI
LPTQPTIINTPTPVRSSVSRSQSPLPSGNGSSIISQEKTPLSTFVLSTCRPSALVLPPGS
TIGILGGGQLARMMAIAAAQLGYKTHIFCPENDPSASHVATYTTKSNYNNYSALDIFARQ
VDVVTYEFENIM---

---WKKVTXETCATKAILEQYIEFESEASVIVARALDGTELTFPLVTNKHCNHILRQTIA
PAQLPEYIHKQANEIGLKIARSNGLVGIIAVELFVVKNNETGQYSLMVNELAPRPHNSGH
WTIEGCVTSQFEQLIRCVCGLPLGSVDFTKRISEAEFIQQQIPPIVMTNLLGQEVNGWEK
ILQTKGSHLHIYAKGDAKEGRK
Translated Amino Acid sequence (All Frames) 
Frame A:
QTDAVAEIPVDNPTSTSTTTTTTTTSNATSILSAIHTSTINSNTSSHNNNQQQQQQQQTI
LPTQPTIINTPTPVRSSVSRSQSPLPSGNGSSIISQEKTPLSTFVLSTCRPSALVLPPGS
TIGILGGGQLARMMAIAAAQLGYKTHIFCPENDPSASHVATYTTKSNYNNYSALDIFARQ
VDVVTYEFENIM---

---lekgyl*nlcnqsnt*tiyrv*irsisycstcfrwnrvnlpigyq*tl*syftsnhc
tssiariys*tsq*nwfkdcsfqwfgwyycrriicsekq*nrsilfngk*igtkttq*ws
ldhrrlcnlsi*tidslclwfafgfsrfh*tyk*s*iysttnstncndksfrsrs*rlgk
ntsn*rftssylc*r*ckrrs*

Frame B:
klmqllkylliiqhqhqlllllqlhqmqhqfyqqfilqqlivihhhiiiinnsnnnnkqy
yqhnql*lihqhqldhqyqdhnhhyhqvmevvlyhkkrhhyqhlyfqhvdhqhwychqvq
plvfwvavn*qe*wllqqhn*virlifsvqrmihplhmlqpiplnqtittiqhwtfsqdk
sml*pmnlkilw---

---WKKVTXETCATKAILEQYIEFESEASVIVARALDGTELTFPLVTNKHCNHILRQTIA
PAQLPEYIHKQANEIGLKIARSNGLVGIIAVELFVVKNNETGQYSLMVNELAPRPHNSGH
WTIEGCVTSQFEQLIRCVCGLPLGSVDFTKRISEAEFIQQQIPPIVMTNLLGQEVNGWEK
ILQTKGSHLHIYAKGDAKEGRK

Frame C:
n*csc*ntc**snininyyyyynyikcninfisnsyfnn***yiit***sttattttnni
tnttnyn*ytnts*iisikitititir*wk*yyitrkdtiinictfnm*tisigiatrfn
hwyfgwrsiskndgycsstirl*dsyflsre*sirftccnlyh*ikl*qlfsighfrkts
rccnl*i*kyy---

---gkrlpxklvqpkqylnni*slnqkhqll*hvl*meqs*pshwlpiniviifyvkplh
qlncqnifinkpmklv*rllvpmvwlvllpsnyl**ktmkqvntl*w*mnwhqdhtivvi
gpskvv*plnlnn*fvvfvvclwvqsislnv*vklnlfnnkfhql**qif*vkkltvgkk
yfklkvhifismlkvmqkkvvk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFO656 (VFO656Q) /CSM/VF/VFO6-C/VFO656Q.Seq.d/                       1895   0.0
VHN643 (VHN643Q) /CSM/VH/VHN6-B/VHN643Q.Seq.d/                       1174   0.0
VHB561 (VHB561Q) /CSM/VH/VHB5-C/VHB561Q.Seq.d/                       1174   0.0
SFE842 (SFE842Q) /CSM/SF/SFE8-B/SFE842Q.Seq.d/                       1174   0.0
VHH651 (VHH651Q) /CSM/VH/VHH6-C/VHH651Q.Seq.d/                       1168   0.0
SFB103 (SFB103Q) /CSM/SF/SFB1-A/SFB103Q.Seq.d/                       1166   0.0
VHQ389 (VHQ389Q) /CSM/VH/VHQ3-D/VHQ389Q.Seq.d/                       1160   0.0
SSK605 (SSK605Q) /CSM/SS/SSK6-A/SSK605Q.Seq.d/                       1150   0.0
SFL170 (SFL170Q) /CSM/SF/SFL1-C/SFL170Q.Seq.d/                       1114   0.0
CHS229 (CHS229Q) /CSM/CH/CHS2-B/CHS229Q.Seq.d/                       1059   0.0
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ436290) Dictyostelium discoideum cDNA clone:ddv30o14, 3' ...  1181   0.0    1
(BJ445055) Dictyostelium discoideum cDNA clone:ddv58e12, 3' ...  1174   0.0    1
(BJ437546) Dictyostelium discoideum cDNA clone:ddv34i15, 3' ...  1174   0.0    1
(BJ397937) Dictyostelium discoideum cDNA clone:dds10d12, 3' ...  1174   0.0    1
(BJ441382) Dictyostelium discoideum cDNA clone:ddv46e14, 3' ...  1168   0.0    1
(BJ446759) Dictyostelium discoideum cDNA clone:ddv63b23, 3' ...  1160   0.0    1
(BJ398905) Dictyostelium discoideum cDNA clone:dds3e01, 3' e...  1136   0.0    1
(BJ401548) Dictyostelium discoideum cDNA clone:dds23k17, 3' ...   579   0.0    2
(BJ386469) Dictyostelium discoideum cDNA clone:ddc58i08, 3' ...   965   0.0    2
(BJ355356) Dictyostelium discoideum cDNA clone:dda56e14, 3' ...   991   0.0    1
dna update 2009. 5.30
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BX897700_1082(BX897700|pid:none) Bartonella quintana str. Toulou...   166   1e-39
AM050060_1(AM050060|pid:none) Azospirillum brasilense partial pu...   164   7e-39
CP000943_2544(CP000943|pid:none) Methylobacterium sp. 4-46, comp...   156   2e-36
CP000774_2062(CP000774|pid:none) Parvibaculum lavamentivorans DS...   153   1e-35
AP009384_2414(AP009384|pid:none) Azorhizobium caulinodans ORS 57...   150   8e-35
AP006627_1021(AP006627|pid:none) Bacillus clausii KSM-K16 DNA, c...   149   2e-34
AL009126_674(AL009126|pid:none) Bacillus subtilis subsp. subtili...   149   2e-34
AE008692_1421(AE008692|pid:none) Zymomonas mobilis subsp. mobili...   147   7e-34
CP000115_995(CP000115|pid:none) Nitrobacter winogradskyi Nb-255,...   147   7e-34
CP000560_622(CP000560|pid:none) Bacillus amyloliquefaciens FZB42...   147   7e-34
protein update 2009. 6.25
PSORT 

 psg: 0.75  gvh: 0.48  alm: 0.35  top: 0.53  tms: 0.00  mit: 0.23  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 44.0 %: nuclear
	  4.0 %: peroxisomal

>> prediction for VFO656 is cyt
5' end seq. ID VFO656F
5' end seq. 
>VFO656F.Seq
CAAACTGATGCAGTTGCTGAAATACCTGTTGATAATCCAACATCAACATCAACTACTACT
ACTACTACAACTACATCAAATGCAACATCAATTTTATCAGCAATTCATACTTCAACAATT
AATAGTAATACATCATCACATAATAATAATCAACAACAGCAACAACAACAACAAACAATA
TTACCAACACAACCAACTATAATTAATACACCAACACCAGTTAGATCATCAGTATCAAGA
TCACAATCACCATTACCATCAGGTAATGGAAGTAGTATTATATCACAAGAAAAGACACCA
TTATCAACATTTGTACTTTCAACATGTAGACCATCAGCATTGGTATTGCCACCAGGTTCA
ACCATTGGTATTTTGGGTGGCGGTCAATTAGCAAGAATGATGGCTATTGCAGCAGCACAA
TTAGGTTATAAGACTCATATTTTCTGTCCAGAGAATGATCCATCCGCTTCACATGTTGCA
ACCTATACCACTAAATCAAACTATAACAACTATTCAGCATTGGACATTTTCGCAAGACAA
GTCGATGTTGTAACCTATGAATTTGAAAATATTATGGNNNNNNNNNN
Length of 5' end seq. 587
3' end seq. ID VFO656Z
3' end seq. 
>VFO656Z.Seq
NNNNNNNNNNTTGGAAAAAGGTTACCTNTGAAACTTGTGCAACCAAAGCAATACTTGAAC
AATATATAGAGTTTGAATCAGAAGCATCAGTTATTGTAGCACGTGCTTTAGATGGAACAG
AGTTAACCTTCCCATTGGTTACCAATAAACATTGTAATCATATTTTACGTCAAACCATTG
CACCAGCTCAATTGCCAGAATATATTCATAAACAAGCCAATGAAATTGGTTTAAAGATTG
CTCGTTCCAATGGTTTGGTTGGTATTATTGCCGTCGAATTATTTGTAGTGAAAAACAATG
AAACAGGTCAATACTCTTTAATGGTAAATGAATTGGCACCAAGACCACACAATAGTGGTC
ATTGGACCATCGAAGGTTGTGTAACCTCTCAATTTGAACAATTGATTCGTTGTGTTTGTG
GTTTGCCTTTGGGTTCAGTCGATTTCACTAAACGTATAAGTGAAGCTGAATTTATTCAAC
AACAAATTCCACCAATTGTAATGACAAATCTTTTAGGTCAAGAAGTTAACGGTTGGGAAA
AAATACTTCAAACTAAAGGTTCACATCTTCATATCTATGCTAAAGGTGATGCAAAAGAAG
GTCGTAAAA
Length of 3' end seq. 609
Connected seq. ID VFO656P
Connected seq. 
>VFO656P.Seq
CAAACTGATGCAGTTGCTGAAATACCTGTTGATAATCCAACATCAACATCAACTACTACT
ACTACTACAACTACATCAAATGCAACATCAATTTTATCAGCAATTCATACTTCAACAATT
AATAGTAATACATCATCACATAATAATAATCAACAACAGCAACAACAACAACAAACAATA
TTACCAACACAACCAACTATAATTAATACACCAACACCAGTTAGATCATCAGTATCAAGA
TCACAATCACCATTACCATCAGGTAATGGAAGTAGTATTATATCACAAGAAAAGACACCA
TTATCAACATTTGTACTTTCAACATGTAGACCATCAGCATTGGTATTGCCACCAGGTTCA
ACCATTGGTATTTTGGGTGGCGGTCAATTAGCAAGAATGATGGCTATTGCAGCAGCACAA
TTAGGTTATAAGACTCATATTTTCTGTCCAGAGAATGATCCATCCGCTTCACATGTTGCA
ACCTATACCACTAAATCAAACTATAACAACTATTCAGCATTGGACATTTTCGCAAGACAA
GTCGATGTTGTAACCTATGAATTTGAAAATATTATGG----------TTGGAAAAAGGTT
ACCTNTGAAACTTGTGCAACCAAAGCAATACTTGAACAATATATAGAGTTTGAATCAGAA
GCATCAGTTATTGTAGCACGTGCTTTAGATGGAACAGAGTTAACCTTCCCATTGGTTACC
AATAAACATTGTAATCATATTTTACGTCAAACCATTGCACCAGCTCAATTGCCAGAATAT
ATTCATAAACAAGCCAATGAAATTGGTTTAAAGATTGCTCGTTCCAATGGTTTGGTTGGT
ATTATTGCCGTCGAATTATTTGTAGTGAAAAACAATGAAACAGGTCAATACTCTTTAATG
GTAAATGAATTGGCACCAAGACCACACAATAGTGGTCATTGGACCATCGAAGGTTGTGTA
ACCTCTCAATTTGAACAATTGATTCGTTGTGTTTGTGGTTTGCCTTTGGGTTCAGTCGAT
TTCACTAAACGTATAAGTGAAGCTGAATTTATTCAACAACAAATTCCACCAATTGTAATG
ACAAATCTTTTAGGTCAAGAAGTTAACGGTTGGGAAAAAATACTTCAAACTAAAGGTTCA
CATCTTCATATCTATGCTAAAGGTGATGCAAAAGAAGGTCGTAAAA
Length of connected seq. 1176
Full length Seq ID -
Full length Seq. -
Length of full length seq. -