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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFO569
Library VF
(Link to library)
Clone ID VFO569
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16480-1
Original site URL
Representative seq. ID VFO569P
(Link to Original site)
Representative DNA sequence 
>VFO569 (VFO569Q) /CSM/VF/VFO5-C/VFO569Q.Seq.d/
ATTTTTGATTTCAGTTATTTCCATTGCAAAAGCCGATTNCCAATATGCTTTTTGTAAATT
CAATGAATTATCAATTGGTGGTGTTGAAGGTATTGCTCATNTTTTAAGTACTGATGGANC
AACATTAAATATTACATTTGATTTTACAACATCATATGCNCAAAATACACAATTTGCTGN
ACAAATTTTAACATATGGTTATAATCCATCATCAATGACCAATTTAGGAAGTGTNTTTGA
TCCAACCAATGTAAAGACAGCAGGATGTCCAAGTGGAACACCACGTGCAGGNGATATTGG
TAATATTCAAGCAAATGGTGGTAATGTTTGAAGCACAAACAATTTCATTAAACATXXXXX
XXXXXAACTTTACTGATAAAGGTAATAGTGATGTTGGTGGTTCTCGTTGTGGTCAAGGTG
TCATTGCTTTAATTCAAGATGCNGACTACAGTTTAAATCTTCCAATGGATTGGAAATGGN
ATGTCATTTGTGCAAAA
sequence update 2001.11.22
Translated Amino Acid sequence 
f*fqlfplqkpixnmlfvnsmnyqlvvlkvllxf*vlmxqh*ilhlilqhhmxkihnllx
kf*hmviihhq*pi*evxliqpm*RQQDVQVEHHVQXILVIFKQMVVMFEAQTISLN---

---NFTDKGNSDVGGSRCGQGVIALIQDADYSLNLPMDWKWXVICAK
Translated Amino Acid sequence (All Frames) 
Frame A:
ifdfsyfhcksrxpicfl*iq*iinwwc*rycsxfky*wxnikyyi*fyniicxkyticx
tnfniwl*siindqfrkcx*snqckdsrmskwnttcrxyw*ysskww*clkhkqfh*t--
-

---NFTDKGNSDVGGSRCGQGVIALIQDADYSLNLPMDWKWXVICAK

Frame B:
flisvisiakadxqyafckfnelsiggvegiahxlstdgxtlnitfdfttsyaqntqfax
qiltygynpssmtnlgsvfdptnvktagcpsgtpragdigniqanggnv*stnnfikh--
-

---tllikvivmlvvlvvvkvsll*fkmxttv*ifqwigngmsfvq

Frame C:
f*fqlfplqkpixnmlfvnsmnyqlvvlkvllxf*vlmxqh*ilhlilqhhmxkihnllx
kf*hmviihhq*pi*evxliqpm*RQQDVQVEHHVQXILVIFKQMVVMFEAQTISLN---

---ly**r***cwwfslwsrchcfnsrcxlqfkssnglemxchlck
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFO569 (VFO569Q) /CSM/VF/VFO5-C/VFO569Q.Seq.d/                        872   0.0
VSF593 (VSF593Q) /CSM/VS/VSF5-D/VSF593Q.Seq.d/                        646   0.0
VHN778 (VHN778Q) /CSM/VH/VHN7-D/VHN778Q.Seq.d/                        646   0.0
VHK773 (VHK773Q) /CSM/VH/VHK7-D/VHK773Q.Seq.d/                        646   0.0
VFO783 (VFO783Q) /CSM/VF/VFO7-D/VFO783Q.Seq.d/                        646   0.0
VFO733 (VFO733Q) /CSM/VF/VFO7-B/VFO733Q.Seq.d/                        646   0.0
VFO691 (VFO691Q) /CSM/VF/VFO6-D/VFO691Q.Seq.d/                        646   0.0
VFO631 (VFO631Q) /CSM/VF/VFO6-B/VFO631Q.Seq.d/                        646   0.0
VFO621 (VFO621Q) /CSM/VF/VFO6-A/VFO621Q.Seq.d/                        646   0.0
VFO427 (VFO427Q) /CSM/VF/VFO4-B/VFO427Q.Seq.d/                        646   0.0
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BR000218) TPA_exp: Dictyostelium discoideum sodC gene for S...   392   0.0    4
(BJ417435) Dictyostelium discoideum cDNA clone:ddv30i17, 5' ...   662   0.0    1
(BJ415708) Dictyostelium discoideum cDNA clone:ddv23o12, 5' ...   609   e-180  2
(BJ424526) Dictyostelium discoideum cDNA clone:ddv52b19, 5' ...   609   e-180  2
(BJ416884) Dictyostelium discoideum cDNA clone:ddv27l14, 5' ...   609   e-180  2
(BJ416100) Dictyostelium discoideum cDNA clone:ddv24p19, 5' ...   609   e-180  2
(BJ416388) Dictyostelium discoideum cDNA clone:ddv26d10, 5' ...   609   e-180  2
(BJ415162) Dictyostelium discoideum cDNA clone:ddv21k16, 5' ...   609   e-180  2
(BJ415603) Dictyostelium discoideum cDNA clone:ddv23h03, 5' ...   609   e-180  2
(BJ416287) Dictyostelium discoideum cDNA clone:ddv25l14, 5' ...   609   e-180  2
dna update 2009. 5.29
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54RQ1) RecName: Full=Extracellular superoxide dismutase [Cu-Zn...   213   2e-54
(Q54RN1) RecName: Full=Extracellular superoxide dismutase [Cu-Zn...    75   6e-13
BC167137_1(BC167137|pid:none) Xenopus tropicalis hypothetical pr...    39   0.051
(Q96VL0) RecName: Full=Superoxide dismutase [Cu-Zn];          EC...    38   0.11
DQ216310_1(DQ216310|pid:none) Taeniopygia guttata clone 0058P000...    38   0.11
DQ216314_1(DQ216314|pid:none) Taeniopygia guttata clone 0065P002...    38   0.15
FJ194441_1(FJ194441|pid:none) Cristaria plicata Cu-Zn superoxide...    38   0.15
S65436(S65436)superoxide dismutase (EC 1.15.1.1) (Cu-Zn) - chicken     37   0.19
(Q751L8) RecName: Full=Superoxide dismutase [Cu-Zn];          EC...    37   0.19
AX461032_1(AX461032|pid:none) Sequence 22 from Patent WO0222823.       37   0.19
protein update 2009. 6.25
PSORT 

 psg: 0.75  gvh: 0.38  alm: 0.36  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 68.0 %: cytoplasmic
	 20.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for VFO569 is cyt
5' end seq. ID VFO569F
5' end seq. 
>VFO569F.Seq
ATTTTTGATTTCAGTTATTTCCATTGCAAAAGCCGATTNCCAATATGCTTTTTGTAAATT
CAATGAATTATCAATTGGTGGTGTTGAAGGTATTGCTCATNTTTTAAGTACTGATGGANC
AACATTAAATATTACATTTGATTTTACAACATCATATGCNCAAAATACACAATTTGCTGN
ACAAATTTTAACATATGGTTATAATCCATCATCAATGACCAATTTAGGAAGTGTNTTTGA
TCCAACCAATGTAAAGACAGCAGGATGTCCAAGTGGAACACCACGTGCAGGNGATATTGG
TAATATTCAAGCAAATGGTGGTAATGTTTGAAGCACAAACAATTTCATTAAACATNNNNN
NNNNN
Length of 5' end seq. 365
3' end seq. ID VFO569Z
3' end seq. 
>VFO569Z.Seq
NNNNNNNNNNAACTTTACTGATAAAGGTAATAGTGATGTTGGTGGTTCTCGTTGTGGTCA
AGGTGTCATTGCTTTAATTCAAGATGCNGACTACAGTTTAAATCTTCCAATGGATTGGAA
ATGGNATGTCATTTGTGCAAAA
Length of 3' end seq. 142
Connected seq. ID VFO569P
Connected seq. 
>VFO569P.Seq
ATTTTTGATTTCAGTTATTTCCATTGCAAAAGCCGATTNCCAATATGCTTTTTGTAAATT
CAATGAATTATCAATTGGTGGTGTTGAAGGTATTGCTCATNTTTTAAGTACTGATGGANC
AACATTAAATATTACATTTGATTTTACAACATCATATGCNCAAAATACACAATTTGCTGN
ACAAATTTTAACATATGGTTATAATCCATCATCAATGACCAATTTAGGAAGTGTNTTTGA
TCCAACCAATGTAAAGACAGCAGGATGTCCAAGTGGAACACCACGTGCAGGNGATATTGG
TAATATTCAAGCAAATGGTGGTAATGTTTGAAGCACAAACAATTTCATTAAACAT-----
-----AACTTTACTGATAAAGGTAATAGTGATGTTGGTGGTTCTCGTTGTGGTCAAGGTG
TCATTGCTTTAATTCAAGATGCNGACTACAGTTTAAATCTTCCAATGGATTGGAAATGGN
ATGTCATTTGTGCAAAA
Length of connected seq. 487
Full length Seq ID -
Full length Seq. -
Length of full length seq. -