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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFO537
Library VF
(Link to library)
Clone ID VFO537
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10001-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>VFO537 (VFO537Q) /CSM/VF/VFO5-B/VFO537Q.Seq.d/
XXXXXXXXXXTGCTCTCACTANATTAGATCAAAATCGTGCTCAATNTATGATCTCTGAAA
AAGGTTGGTACAAATGTTGATAATGTTCATAATGTTATAATTTGGGGTAATCATTCTCAA
ACTCAAGTACCAGATGTTAATCATGGTTATATTTTAAATTATCCAAATCGTGGTTTAATT
GAACCAATTCCATCATCAGTTAATGATGATAAATGGTTAAATGAACAATTTATTCCATTA
GTTCAAAATAGAGGTGCNACAGTTANTGCAGCAAGAAAATTATCATCAGCTGCTTCAGCT
GCCAATGCAATCGTTGGTCATGTTAGAGATTGGTTATTAGGTACTAAAGATGGTGAACAT
GTTTCAATGGCTGTTTATTCCGATGGTTCGTTATAATGTTCCAAAAGGNTGAATCTTTTC
ATT
sequence update 2001.11.22
Translated Amino Acid sequence 
---lslx*ikivlnx*SLKKVGTNVDNVHNVIIWGNHSQTQVPDVNHGYILNYPNRGLIE
PIPSSVNDDKWLNEQFIPLVQNRGATVXAARKLSSAASAANAIVGHVRDWLLGTKDGEHV
SMAVYSDGSL*cskrxnlfi
Translated Amino Acid sequence (All Frames) 
Frame A:
---altxldqnraqxmisekgwykc**cs*cynlg*sfsnsstrc*swlyfklskswfn*
tnsiis****mvk*tiysissk*rcxsxcskkiiiscfscqcnrwsc*rlviry*rw*tc
fngclfrwfvimfqkxesfh


Frame B:
---lslx*ikivlnx*SLKKVGTNVDNVHNVIIWGNHSQTQVPDVNHGYILNYPNRGLIE
PIPSSVNDDKWLNEQFIPLVQNRGATVXAARKLSSAASAANAIVGHVRDWLLGTKDGEHV
SMAVYSDGSL*cskrxnlfi


Frame C:
---shxirskscsxydl*krlvqmlimfiml*fgviilklkyqmlimvif*iiqivv*ln
qfhhqlmming*mnnlfh*fkievxqlxqqenyhqllqlpmqslvmleigy*vlkmvnmf
qwlfipmvrynvpkg*ifs
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFO537 (VFO537Q) /CSM/VF/VFO5-B/VFO537Q.Seq.d/                        789   0.0
VFL665 (VFL665Q) /CSM/VF/VFL6-C/VFL665Q.Seq.d/                        749   0.0
VFL380 (VFL380Q) /CSM/VF/VFL3-D/VFL380Q.Seq.d/                        749   0.0
VFK667 (VFK667Q) /CSM/VF/VFK6-C/VFK667Q.Seq.d/                        749   0.0
VFH705 (VFH705Q) /CSM/VF/VFH7-A/VFH705Q.Seq.d/                        749   0.0
SFL214 (SFL214Q) /CSM/SF/SFL2-A/SFL214Q.Seq.d/                        749   0.0
SFJ109 (SFJ109Q) /CSM/SF/SFJ1-A/SFJ109Q.Seq.d/                        749   0.0
AFK292 (AFK292Q) /CSM/AF/AFK2-D/AFK292Q.Seq.d/                        749   0.0
AFJ250 (AFJ250Q) /CSM/AF/AFJ2-C/AFJ250Q.Seq.d/                        749   0.0
AFI848 (AFI848Q) /CSM/AF/AFI8-B/AFI848Q.Seq.d/                        749   0.0
own update 2001.11.29
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ436201) Dictyostelium discoideum cDNA clone:ddv30i09, 3' ...   789   0.0    1
(BJ434178) Dictyostelium discoideum cDNA clone:ddv16j01, 3' ...   636   0.0    3
(BJ344084) Dictyostelium discoideum cDNA clone:dda18j11, 3' ...   636   0.0    3
(BJ344113) Dictyostelium discoideum cDNA clone:dda18p12, 3' ...   636   0.0    3
(BJ433659) Dictyostelium discoideum cDNA clone:ddv22e18, 3' ...   636   0.0    3
(BJ345167) Dictyostelium discoideum cDNA clone:dda21g24, 3' ...   636   0.0    3
(BJ434124) Dictyostelium discoideum cDNA clone:ddv23p19, 3' ...   636   0.0    3
(BJ401656) Dictyostelium discoideum cDNA clone:dds19a03, 3' ...   636   0.0    3
(BJ344491) Dictyostelium discoideum cDNA clone:dda19c14, 3' ...   636   0.0    3
(BJ401405) Dictyostelium discoideum cDNA clone:dds23k04, 3' ...   636   0.0    3
dna update 2009. 5.23
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54GE6) RecName: Full=Probable malate dehydrogenase 1;         ...   198   4e-53
AF459646_1(AF459646|pid:none) Lupinus albus malate dehydrogenase...   103   5e-22
DQ149971_1(DQ149971|pid:none) Mytilus californianus cytosolic ma...    97   5e-21
DQ149969_1(DQ149969|pid:none) Mytilus trossulus cytosolic malate...    96   1e-20
(O24047) RecName: Full=Malate dehydrogenase, cytoplasmic;       ...    99   1e-20
(Q7XDC8) RecName: Full=Malate dehydrogenase, cytoplasmic;       ...    98   1e-20
AJ299059_1(AJ299059|pid:none) Cicer arietinum mRNA for cytosolic...    99   2e-20
FB851801_1(FB851801|pid:none) Sequence 71074 from Patent WO20080...    99   2e-20
EU953633_1(EU953633|pid:none) Zea mays clone 1441626 malate dehy...    99   2e-20
AB264544_1(AB264544|pid:none) Iris x hollandica IhMDH1 mRNA for ...    99   2e-20
protein update 2009. 6.25
PSORT 

 psg: 0.82  gvh: 0.38  alm: 0.49  top: 0.53  tms: 0.00  mit: 0.25  mip: 0.08
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 28.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: peroxisomal
	  4.0 %: endoplasmic reticulum

>> prediction for VFO537 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VFO537Z
3' end seq. 
>VFO537Z.Seq
NNNNNNNNNNTGCTCTCACTANATTAGATCAAAATCGTGCTCAATNTATGATCTCTGAAA
AAGGTTGGTACAAATGTTGATAATGTTCATAATGTTATAATTTGGGGTAATCATTCTCAA
ACTCAAGTACCAGATGTTAATCATGGTTATATTTTAAATTATCCAAATCGTGGTTTAATT
GAACCAATTCCATCATCAGTTAATGATGATAAATGGTTAAATGAACAATTTATTCCATTA
GTTCAAAATAGAGGTGCNACAGTTANTGCAGCAAGAAAATTATCATCAGCTGCTTCAGCT
GCCAATGCAATCGTTGGTCATGTTAGAGATTGGTTATTAGGTACTAAAGATGGTGAACAT
GTTTCAATGGCTGTTTATTCCGATGGTTCGTTATAATGTTCCAAAAGGNTGAATCTTTTC
ATT
Length of 3' end seq. 423
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -