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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFO256
Library VF
(Link to library)
Clone ID VFO256
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U09124-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>VFO256 (VFO256Q) /CSM/VF/VFO2-C/VFO256Q.Seq.d/
XXXXXXXXXXCAATTGCAGCAGGTTTAGGTGTTGACGGATCCCATATGTGNAATCATGAT
TGGAGACATGCTGCAGCATTTGTAATGGGACCACCAATTCGTCCAGATCCAAGAACTAAA
GGTGTATTAATGGATTATTTAGCAAGAGGTGACCTCGATTGTGTTGGTACTGATAATTGT
ACATTCTGTGCTGACCAAAAAGCAATGGGTAAAGATGATTTCACCAAAATTCCAAATGGT
GTAAATGGTGTTGAAGATAGAATGTCAATCGTTTGGGAGAATGGTGTCAATACTGGTAAA
TTAACATGGTGTCAATTCGTTAGAGCAACCTCTTCAGAAGCTGCTCGTATTTTCAATATT
TATCCAAGAAAAGGTCGTATCGATGTTGGTTGTGATGGTGATATCGTCATTTGGGATCCA
AATCAATCAAAAACCATCTCAAAGGATACTCATCATCATGCAGTTGATTTTAACATTTTC
GAAGGTATCAAAGTAACTGGTATAGCAGTTACCACAATCGTAGCTGGTAATATCGTTTGG
TCTGATAATAAATTATCATGTGTCAAAGGTAGTGGTAGATTTGTACCAAGACCACCATTT
GGTCCAGTATTTGATGGTATTAACAAAGAGATAAGGTTAGAAATGAATTATTAAGAAAAG
TTATAGAAAACCATACGAAGANATAATACAAAAAATTCATCAAAATAATACATTTT
sequence update 2001.11.22
Translated Amino Acid sequence 
---IAAGLGVDGSHMXNHDWRHAAAFVMGPPIRPDPRTKGVLMDYLARGDLDCVGTDNCT
FCADQKAMGKDDFTKIPNGVNGVEDRMSIVWENGVNTGKLTWCQFVRATSSEAARIFNIY
PRKGRIDVGCDGDIVIWDPNQSKTISKDTHHHAVDFNIFEGIKVTGIAVTTIVAGNIVWS
DNKLSCVKGSGRFVPRPPFGPVFDGINKEIRLEMNY*ekl*ktirrxntknssk*yi
Translated Amino Acid sequence (All Frames) 
Frame A:
---ncsrfrc*ripyvxs*letccsicngttnssrskn*rcinglfskr*prlcwy**ly
ilc*pksng*r*fhqnskwckwc*r*nvnrlgewcqyw*inmvsir*snlfrscsyfqyl
skkrsyrcwl*w*yrhlgsksiknhlkgyssscs*f*hfrryqsnwyssyhnrsw*yrlv
***iimcqr*w*ictkttiwssi*wy*qrdkvrnellrkvienhtkx*ykkfikiihf


Frame B:
---IAAGLGVDGSHMXNHDWRHAAAFVMGPPIRPDPRTKGVLMDYLARGDLDCVGTDNCT
FCADQKAMGKDDFTKIPNGVNGVEDRMSIVWENGVNTGKLTWCQFVRATSSEAARIFNIY
PRKGRIDVGCDGDIVIWDPNQSKTISKDTHHHAVDFNIFEGIKVTGIAVTTIVAGNIVWS
DNKLSCVKGSGRFVPRPPFGPVFDGINKEIRLEMNY*ekl*ktirrxntknssk*yi


Frame C:
---lqqv*vltdpicximigdmlqhl*wdhqfvqiqelkvy*wii*qevtsivlvliivh
svltkkqwvkmispkfqmv*mvlkiecqsfgrmvsilvn*hgvnsleqplqkllvfsifi
qekvvsmlvvmvissfgiqinqkpsqriliimqliltfskvsk*lv*qlpqs*lvisfgl
iinyhvskvvvdlyqdhhlvqylmvltkr*g*k*iikksyrkpyexiiqkihqnntf
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFO256 (VFO256Q) /CSM/VF/VFO2-C/VFO256Q.Seq.d/                       1388   0.0
SFI218 (SFI218Q) /CSM/SF/SFI2-A/SFI218Q.Seq.d/                       1330   0.0
VFK388 (VFK388Q) /CSM/VF/VFK3-D/VFK388Q.Seq.d/                       1326   0.0
SFG423 (SFG423Q) /CSM/SF/SFG4-A/SFG423Q.Seq.d/                       1304   0.0
VFO840 (VFO840Q) /CSM/VF/VFO8-B/VFO840Q.Seq.d/                       1294   0.0
SFJ676 (SFJ676Q) /CSM/SF/SFJ6-D/SFJ676Q.Seq.d/                       1285   0.0
VFG406 (VFG406Q) /CSM/VF/VFG4-A/VFG406Q.Seq.d/                       1259   0.0
AFD823 (AFD823Q) /CSM/AF/AFD8-A/AFD823Q.Seq.d/                       1235   0.0
VFC676 (VFC676Q) /CSM/VF/VFC6-D/VFC676Q.Seq.d/                       1072   0.0
SFH313 (SFH313Q) /CSM/SF/SFH3-A/SFH313Q.Seq.d/                        878   0.0
own update 2001.11.29
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ436052) Dictyostelium discoideum cDNA clone:ddv29o14, 3' ...  1388   0.0    1
(BJ433462) Dictyostelium discoideum cDNA clone:ddv21p21, 3' ...  1251   0.0    3
(BJ341794) Dictyostelium discoideum cDNA clone:dda8n06, 3' e...  1235   0.0    1
(BJ436227) Dictyostelium discoideum cDNA clone:ddv30p10, 3' ...  1205   0.0    2
(BJ400415) Dictyostelium discoideum cDNA clone:dds13n06, 3' ...  1205   0.0    5
(AF465757) Dictyostelium discoideum dihydropyrimidine amidoh...  1189   0.0    4
(BJ402462) Dictyostelium discoideum cDNA clone:dds17c06, 3' ...  1189   0.0    3
(BJ402203) Dictyostelium discoideum cDNA clone:dds20g20, 3' ...  1144   0.0    3
(BJ431184) Dictyostelium discoideum cDNA clone:ddv13l02, 3' ...  1017   0.0    4
(BJ430315) Dictyostelium discoideum cDNA clone:ddv6g20, 3' e...   934   0.0    3
dna update 2009. 5.19
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF465757_1(AF465757|pid:none) Dictyostelium discoideum dihydropy...   401   e-110
BC084771_1(BC084771|pid:none) Xenopus laevis hypothetical LOC495...   244   2e-63
(Q18677) RecName: Full=Dihydropyrimidinase 2;          EC=3.5.2....   240   4e-62
(Q21773) RecName: Full=Dihydropyrimidinase 1;          EC=3.5.2....   239   5e-62
(Q63150) RecName: Full=Dihydropyrimidinase;          Short=DHPas...   238   1e-61
D63704_1(D63704|pid:none) Rat mRNA for dihydropyrimidinase, comp...   237   3e-61
AK004899_1(AK004899|pid:none) Mus musculus adult male liver cDNA...   233   4e-60
AF227731_1(AF227731|pid:none) Mus musculus dihydropyrimidinase m...   229   8e-59
T23968(T23968)hypothetical protein R06C7.3 - Caenorhabditis eleg...   223   5e-57
FN314069_1(FN314069|pid:none) Schistosoma japonicum isolate Anhu...   217   3e-55
protein update 2009. 6.25
PSORT 

 psg: 0.75  gvh: 0.44  alm: 0.34  top: 0.53  tms: 0.00  mit: 0.14  mip: 0.00
 nuc: 0.06  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: cytoplasmic
	 20.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for VFO256 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VFO256Z
3' end seq. 
>VFO256Z.Seq
NNNNNNNNNNCAATTGCAGCAGGTTTAGGTGTTGACGGATCCCATATGTGNAATCATGAT
TGGAGACATGCTGCAGCATTTGTAATGGGACCACCAATTCGTCCAGATCCAAGAACTAAA
GGTGTATTAATGGATTATTTAGCAAGAGGTGACCTCGATTGTGTTGGTACTGATAATTGT
ACATTCTGTGCTGACCAAAAAGCAATGGGTAAAGATGATTTCACCAAAATTCCAAATGGT
GTAAATGGTGTTGAAGATAGAATGTCAATCGTTTGGGAGAATGGTGTCAATACTGGTAAA
TTAACATGGTGTCAATTCGTTAGAGCAACCTCTTCAGAAGCTGCTCGTATTTTCAATATT
TATCCAAGAAAAGGTCGTATCGATGTTGGTTGTGATGGTGATATCGTCATTTGGGATCCA
AATCAATCAAAAACCATCTCAAAGGATACTCATCATCATGCAGTTGATTTTAACATTTTC
GAAGGTATCAAAGTAACTGGTATAGCAGTTACCACAATCGTAGCTGGTAATATCGTTTGG
TCTGATAATAAATTATCATGTGTCAAAGGTAGTGGTAGATTTGTACCAAGACCACCATTT
GGTCCAGTATTTGATGGTATTAACAAAGAGATAAGGTTAGAAATGAATTATTAAGAAAAG
TTATAGAAAACCATACGAAGANATAATACAAAAAATTCATCAAAATAATACATTTT
Length of 3' end seq. 716
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -