VFO214
Library VF
(Link to library)
Clone ID VFO214
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13829-1
Original site URL
Representative seq. ID VFO214P
(Link to Original site)
Representative DNA sequence
>VFO214 (VFO214Q) /CSM/VF/VFO2-A/VFO214Q.Seq.d/
TTAATTAAATTTATCCACACACACATAATATATATACACCAAAAATGAATTGGAAAGAGC
AACTTGAAGAAATTGGTAATTGCCAAGATTCAAACAAAGCTATCCAAGATTATAATAAAA
TTCTCACTATTCAAGAATCACCAGATGATATTAAAGAGGAAGCAATTCTTAGATTAGCAA
AATTATTTGTAAAGATTGGTAAAGGTGATCAATTACCAACACTTTTAAGATCAGTTAGAC
CATTTTTTGATAAAATTTCTAAACCAAAGACTGATAAAATCGTTAGAAATTTTATTGATA
TTTTCTCAACCGTACCTGATAATTTAACAACTTTAATTGAATTTGTCAAAGAGAATATTC
AATGGTGTAAAGATACAAATAGAATTTATTTAAGACAAAGATTAGAAACTAAACTTTTTA
CATTAATGTTTGAAGCAAAAGATTATGCAAATGCATTAAGCGGATTAACAACATTATTAA
CAGAAATTAAAAGATTGGATGATAAACCATTATTAGTTGAAATTCAXXXXXXXXXXCTCG
TACAAATGCAAATACAATCTATTGTCCACCAAAACTTCAAGCTGAAATCGATATGCAATC
TGGTATTTTACATTCTGAAGAAAAAGATTATAAAACTGCTTTTTCATACTTTTTCGAATC
ATATGAAACTTATGATAGTCTTGAAGATCCATTTGCAATGAAAGCATTAAAGTATATGTT
ACTTTGTAAAATTATGACCAACCAAACTGATGATGTTCATGCATTAGTTAATGGTAAAAT
TGGTTTGAAATATCATAACAATAGATCCATTGAAGCAATTACTCAAATTTCAAAATCTCA
TGCAAAGAGATCACTACATATGTTCCAAGAGGTAACCAAAGAATTTTCTGATCAATTATC
TGATGATCCAATCATTCATAGTCATTTAACTGAATTATATAGTAATCTTCTTGAACAAAA
TTTATGTCGTATTATTGAACCATTCTCAAGGGTTGAAATTTCACATATTGCAAAATTAAT
TGATTTACCAGTTGATGTTGTTGAAAGAAAATTATCACTTATGATCCTTGATAAGAAATA
TAATGGTATCCTCGATCAAGGTACTGGTACTTTAATTGTATTTGAAGAACAAAAAGAAGA
TAAATTATTTAATTGTTCTTTAGAAACTATTGGTGCTTTAAGTCGTGTTGTTATTTAC
sequence update 2001.11.22
Translated Amino Acid sequence
n*IYPHTHNIYTPKMNWKEQLEEIGNCQDSNKAIQDYNKILTIQESPDDIKEEAILRLAK
LFVKIGKGDQLPTLLRSVRPFFDKISKPKTDKIVRNFIDIFSTVPDNLTTLIEFVKENIQ
WCKDTNRIYLRQRLETKLFTLMFEAKDYANALSGLTTLLTEIKRLDDKPLLVEI---

---RTNANTIYCPPKLQAEIDMQSGILHSEEKDYKTAFSYFFESYETYDSLEDPFAMKAL
KYMLLCKIMTNQTDDVHALVNGKIGLKYHNNRSIEAITQISKSHAKRSLHMFQEVTKEFS
DQLSDDPIIHSHLTELYSNLLEQNLCRIIEPFSRVEISHIAKLIDLPVDVVERKLSLMIL
DKKYNGILDQGTGTLIVFEEQKEDKLFNCSLETIGALSRVVIY


Translated Amino Acid sequence (All Frames)
Frame A:
likfihthiiyihqk*igksnlkklviakiqtklskiiikfslfknhqmilkrkqfld*q
nyl*rlvkvinyqhf*dqldhflikflnqrliksleillifsqpylii*ql*lnlskrif
ngvkiqiefi*dkd*klnflh*clkqkimqmh*ad*qhy*qklkdwminhy*lkf---

---lvqmqiqsivhqnfklksicnlvfyilkkkiikllfhtfsnhmklmivlkihlq*kh
*sicyfvkl*ptklmmfmh*lmvklv*niitidplkqllkfqnlmqrdhyicskr*pknf
linylmiqsfivi*lnyiviflnkiyvvllnhsqglkfhilqn*liyqlmllkenyhl*s
lirnimvssikvlvl*lylknkkkinylivl*kllvl*vvllf

Frame B:
*lnlstht*yiytknelerat*rnw*lprfkqsyprl**nshysritr*y*rgsns*isk
iickdw*r*sitntfkis*tif**nf*tkd**nr*kfy*yflnrt**fnnfn*icqreys
mv*ryk*nlfktkirn*tfyinv*skrlckcikrinniinrn*kig**tiis*ns---

---sykckynllstktss*nryaiwyftf*rkrl*ncffilfrii*nl**s*rsicnesi
kvyvtl*nydqpn**cscis*w*nwfeis*q*ih*snysnfkisckeittyvprgnqrif
*sii**snhs*sfn*ii**ss*tkfmsyy*tilkg*nftyckin*fts*cc*kkiitydp
**ei*wyprsrywyfnci*rtkrr*ii*lffrnywcfksccyl

Frame C:
n*IYPHTHNIYTPKMNWKEQLEEIGNCQDSNKAIQDYNKILTIQESPDDIKEEAILRLAK
LFVKIGKGDQLPTLLRSVRPFFDKISKPKTDKIVRNFIDIFSTVPDNLTTLIEFVKENIQ
WCKDTNRIYLRQRLETKLFTLMFEAKDYANALSGLTTLLTEIKRLDDKPLLVEI---

---RTNANTIYCPPKLQAEIDMQSGILHSEEKDYKTAFSYFFESYETYDSLEDPFAMKAL
KYMLLCKIMTNQTDDVHALVNGKIGLKYHNNRSIEAITQISKSHAKRSLHMFQEVTKEFS
DQLSDDPIIHSHLTELYSNLLEQNLCRIIEPFSRVEISHIAKLIDLPVDVVERKLSLMIL
DKKYNGILDQGTGTLIVFEEQKEDKLFNCSLETIGALSRVVIY

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFO214 (VFO214Q) /CSM/VF/VFO2-A/VFO214Q.Seq.d/ 2315 0.0
AFK194 (AFK194Q) /CSM/AF/AFK1-D/AFK194Q.Seq.d/ 1304 0.0
VFC823 (VFC823Q) /CSM/VF/VFC8-A/VFC823Q.Seq.d/ 1298 0.0
CHC241 (CHC241Q) /CSM/CH/CHC2-B/CHC241Q.Seq.d/ 1298 0.0
AFM681 (AFM681Q) /CSM/AF/AFM6-D/AFM681Q.Seq.d/ 1298 0.0
AFF220 (AFF220Q) /CSM/AF/AFF2-A/AFF220Q.Seq.d/ 1298 0.0
AFB850 (AFB850Q) /CSM/AF/AFB8-C/AFB850Q.Seq.d/ 1298 0.0
VFO795 (VFO795Q) /CSM/VF/VFO7-D/VFO795Q.Seq.d/ 1296 0.0
AFH516 (AFH516Q) /CSM/AF/AFH5-A/AFH516Q.Seq.d/ 1296 0.0
AFG380 (AFG380Q) /CSM/AF/AFG3-D/AFG380Q.Seq.d/ 1296 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ435959) Dictyostelium discoideum cDNA clone:ddv29k04, 3' ... 1312 0.0 1
(BJ345183) Dictyostelium discoideum cDNA clone:dda21k23, 3' ... 1304 0.0 1
(BJ430133) Dictyostelium discoideum cDNA clone:ddv6n06, 3' e... 1298 0.0 1
(BJ377870) Dictyostelium discoideum cDNA clone:ddc26a12, 3' ... 1298 0.0 1
(BJ347315) Dictyostelium discoideum cDNA clone:dda26a22, 3' ... 1298 0.0 1
(BJ340949) Dictyostelium discoideum cDNA clone:dda4d14, 3' e... 1298 0.0 1
(BJ339954) Dictyostelium discoideum cDNA clone:dda11g06, 3' ... 1298 0.0 1
(BJ436364) Dictyostelium discoideum cDNA clone:ddv30n23, 3' ... 1296 0.0 1
(BJ343473) Dictyostelium discoideum cDNA clone:dda16o03, 3' ... 1296 0.0 1
(BJ342432) Dictyostelium discoideum cDNA clone:dda13p19, 3' ... 1296 0.0 1
dna update 2009. 5.19
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54UB5) RecName: Full=26S proteasome non-ATPase regulatory subu... 435 0.0
AM424416_1(AM424416|pid:none) Vitis vinifera contig VV78X196128.... 266 9e-94
BT053774_1(BT053774|pid:none) Zea mays full-length cDNA clone ZM... 262 3e-93
EU969379_1(EU969379|pid:none) Zea mays clone 329471 26S proteaso... 261 5e-93
BT069707_1(BT069707|pid:none) Zea mays full-length cDNA clone ZM... 261 6e-93
AY230834_1(AY230834|pid:none) Arabidopsis thaliana 26S proteasom... 260 6e-93
AK064788_1(AK064788|pid:none) Oryza sativa Japonica Group cDNA c... 261 1e-92
A86414(A86414) hypothetical protein F28N24.15 - Arabidopsis thal... 260 1e-92
AY230837_1(AY230837|pid:none) Arabidopsis thaliana 26S proteasom... 260 2e-92
BT035753_1(BT035753|pid:none) Zea mays full-length cDNA clone ZM... 259 5e-92
protein update 2009. 6.25
PSORT

psg: 0.71 gvh: 0.17 alm: 0.40 top: 0.53 tms: 0.00 mit: 0.28 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: nuclear
36.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: Golgi

>> prediction for VFO214 is nuc

5' end seq. ID VFO214F
5' end seq.
>VFO214F.Seq
TTAATTAAATTTATCCACACACACATAATATATATACACCAAAAATGAATTGGAAAGAGC
AACTTGAAGAAATTGGTAATTGCCAAGATTCAAACAAAGCTATCCAAGATTATAATAAAA
TTCTCACTATTCAAGAATCACCAGATGATATTAAAGAGGAAGCAATTCTTAGATTAGCAA
AATTATTTGTAAAGATTGGTAAAGGTGATCAATTACCAACACTTTTAAGATCAGTTAGAC
CATTTTTTGATAAAATTTCTAAACCAAAGACTGATAAAATCGTTAGAAATTTTATTGATA
TTTTCTCAACCGTACCTGATAATTTAACAACTTTAATTGAATTTGTCAAAGAGAATATTC
AATGGTGTAAAGATACAAATAGAATTTATTTAAGACAAAGATTAGAAACTAAACTTTTTA
CATTAATGTTTGAAGCAAAAGATTATGCAAATGCATTAAGCGGATTAACAACATTATTAA
CAGAAATTAAAAGATTGGATGATAAACCATTATTAGTTGAAATTCANNNNNNNNNN
Length of 5' end seq. 536
3' end seq. ID VFO214Z
3' end seq.
>VFO214Z.Seq
NNNNNNNNNNCTCGTACAAATGCAAATACAATCTATTGTCCACCAAAACTTCAAGCTGAA
ATCGATATGCAATCTGGTATTTTACATTCTGAAGAAAAAGATTATAAAACTGCTTTTTCA
TACTTTTTCGAATCATATGAAACTTATGATAGTCTTGAAGATCCATTTGCAATGAAAGCA
TTAAAGTATATGTTACTTTGTAAAATTATGACCAACCAAACTGATGATGTTCATGCATTA
GTTAATGGTAAAATTGGTTTGAAATATCATAACAATAGATCCATTGAAGCAATTACTCAA
ATTTCAAAATCTCATGCAAAGAGATCACTACATATGTTCCAAGAGGTAACCAAAGAATTT
TCTGATCAATTATCTGATGATCCAATCATTCATAGTCATTTAACTGAATTATATAGTAAT
CTTCTTGAACAAAATTTATGTCGTATTATTGAACCATTCTCAAGGGTTGAAATTTCACAT
ATTGCAAAATTAATTGATTTACCAGTTGATGTTGTTGAAAGAAAATTATCACTTATGATC
CTTGATAAGAAATATAATGGTATCCTCGATCAAGGTACTGGTACTTTAATTGTATTTGAA
GAACAAAAAGAAGATAAATTATTTAATTGTTCTTTAGAAACTATTGGTGCTTTAAGTCGT
GTTGTTATTTAC
Length of 3' end seq. 672
Connected seq. ID VFO214P
Connected seq.
>VFO214P.Seq
TTAATTAAATTTATCCACACACACATAATATATATACACCAAAAATGAATTGGAAAGAGC
AACTTGAAGAAATTGGTAATTGCCAAGATTCAAACAAAGCTATCCAAGATTATAATAAAA
TTCTCACTATTCAAGAATCACCAGATGATATTAAAGAGGAAGCAATTCTTAGATTAGCAA
AATTATTTGTAAAGATTGGTAAAGGTGATCAATTACCAACACTTTTAAGATCAGTTAGAC
CATTTTTTGATAAAATTTCTAAACCAAAGACTGATAAAATCGTTAGAAATTTTATTGATA
TTTTCTCAACCGTACCTGATAATTTAACAACTTTAATTGAATTTGTCAAAGAGAATATTC
AATGGTGTAAAGATACAAATAGAATTTATTTAAGACAAAGATTAGAAACTAAACTTTTTA
CATTAATGTTTGAAGCAAAAGATTATGCAAATGCATTAAGCGGATTAACAACATTATTAA
CAGAAATTAAAAGATTGGATGATAAACCATTATTAGTTGAAATTCA----------CTCG
TACAAATGCAAATACAATCTATTGTCCACCAAAACTTCAAGCTGAAATCGATATGCAATC
TGGTATTTTACATTCTGAAGAAAAAGATTATAAAACTGCTTTTTCATACTTTTTCGAATC
ATATGAAACTTATGATAGTCTTGAAGATCCATTTGCAATGAAAGCATTAAAGTATATGTT
ACTTTGTAAAATTATGACCAACCAAACTGATGATGTTCATGCATTAGTTAATGGTAAAAT
TGGTTTGAAATATCATAACAATAGATCCATTGAAGCAATTACTCAAATTTCAAAATCTCA
TGCAAAGAGATCACTACATATGTTCCAAGAGGTAACCAAAGAATTTTCTGATCAATTATC
TGATGATCCAATCATTCATAGTCATTTAACTGAATTATATAGTAATCTTCTTGAACAAAA
TTTATGTCGTATTATTGAACCATTCTCAAGGGTTGAAATTTCACATATTGCAAAATTAAT
TGATTTACCAGTTGATGTTGTTGAAAGAAAATTATCACTTATGATCCTTGATAAGAAATA
TAATGGTATCCTCGATCAAGGTACTGGTACTTTAATTGTATTTGAAGAACAAAAAGAAGA
TAAATTATTTAATTGTTCTTTAGAAACTATTGGTGCTTTAAGTCGTGTTGTTATTTAC
Length of connected seq. 1188
Full length Seq ID -
Full length Seq. -
Length of full length seq. -