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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFO207
Library VF
(Link to library)
Clone ID VFO207
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID VFO207P
(Link to Original site)
Representative DNA sequence 
>VFO207 (VFO207Q) /CSM/VF/VFO2-A/VFO207Q.Seq.d/
TATATATTAATAGAATTGTAATAAAATGTCAAAAGTAATTACAGGAAAGCAATACTCTTG
GTCAGAGTTAGCCAAACATAACACTGAAAATGATTGTTGGGTTGCAGTCGATGGTAAAGT
TTATGATATTACAAGATGGGTACCATTACATCCAGGTGGTAAAGAAGTTTTACTTTTAGC
AGCAGGTAGAGATGTTACAAATTTATTTGAAAGTTATCATCCAATGTCAGATAAACCAAC
ATCAATTTTAAAGAATTATGAAATTGGATATATTTCATCATATGAACATCCAAAATTTGT
TCAAAAATCAGATTTCTACAAGACATTAAAAGAGAGAGTTAGAAAACATTTTAAAGCAAC
CGATCAAGATCCACAAATGGCAGTTAGTATTTTCTCACGTTTAGCATTGGTTTATCTTTT
AGTGTTTGTAACTTACTATTTAGCACATTATACCAGTAACAATTTTTATTTAAATTGTTT
CTTGGCAATCGTTTACGCACTTTGCAACTCATTATTCTCAATGCATATGATGCATGATTC
ATGTCATGCTGCCXXXXXXXXXXTATGGTATTTACACACTCAAATATCGTACTCAAGATT
GGGAAGCTTTTGTAAAGNATGGTAAAAATGGTGCAATTCGTGTTAGTGTCGCCACAAATT
TCGATAAGGCCGCTTACGTCATTGGTAAATTGTCTTTTGTTTTCTTCCGTTTCATCCTTC
CACTCCGTTATCATAGCTTTACAGATTTAATTTGTTATTTCCTCATTGCTGAATTCGTCT
TTGGTTGGTATCTCACAATTAATTTCCAAGTTAGTCATGTCGCTGAAGATCTCAAATTCT
TTGCTACCCCTGAAAGACCAGATGAACCATCTCAAATCAATGAAGATTGGGCAATCCTTC
AACTTAAAACTACTCAAGATTATGGTCATGGTTCACTCCTTTGTACCTTTTTTAGTGGTT
CTTTAAATCATCAAGTTGTTCATCATTTATTCCCATCAATTGCTCAAGATTTCTACCCAC
AACTTGTACCAATTGTAAAAGAAGTTTGTAAAGAACATAACATTACTTACCACATTAAAC
CAAACTTCACTGAAGCTATTATGTCACACATTAATTACCTTTACAAAATGGGTAATNATC
CAGATTATGTTAAAAAACCATTAGCCTCAAAAG
sequence update 2001.11.22
Translated Amino Acid sequence 
iy**NCNKMSKVITGKQYSWSELAKHNTENDCWVAVDGKVYDITRWVPLHPGGKEVLLLA
AGRDVTNLFESYHPMSDKPTSILKNYEIGYISSYEHPKFVQKSDFYKTLKERVRKHFKAT
DQDPQMAVSIFSRLALVYLLVFVTYYLAHYTSNNFYLNCFLAIVYALCNSLFSMHMMHDS
CHAA---

---YGIYTLKYRTQDWEAFVKXGKNGAIRVSVATNFDKAAYVIGKLSFVFFRFILPLRYH
SFTDLICYFLIAEFVFGWYLTINFQVSHVAEDLKFFATPERPDEPSQINEDWAILQLKTT
QDYGHGSLLCTFFSGSLNHQVVHHLFPSIAQDFYPQLVPIVKEVCKEHNITYHIKPNFTE
AIMSHINYLYKMGNXPDYVKKPLASK
Translated Amino Acid sequence (All Frames) 
Frame A:
yiliel**nvksnyrkaillvrvsqt*h*k*llgcsrw*sl*yykmgtitsrw*rsftfs
sr*rcykfi*klssnvr*tninfkel*nwiyfii*tskicskirflqdikres*ktf*sn
rsrstngs*yfltfsiglsfsvcnllfstlyq*qflfklflgnrlrtlqliilnayda*f
mscc---

---YGIYTLKYRTQDWEAFVKXGKNGAIRVSVATNFDKAAYVIGKLSFVFFRFILPLRYH
SFTDLICYFLIAEFVFGWYLTINFQVSHVAEDLKFFATPERPDEPSQINEDWAILQLKTT
QDYGHGSLLCTFFSGSLNHQVVHHLFPSIAQDFYPQLVPIVKEVCKEHNITYHIKPNFTE
AIMSHINYLYKMGNXPDYVKKPLASK

Frame B:
iy**NCNKMSKVITGKQYSWSELAKHNTENDCWVAVDGKVYDITRWVPLHPGGKEVLLLA
AGRDVTNLFESYHPMSDKPTSILKNYEIGYISSYEHPKFVQKSDFYKTLKERVRKHFKAT
DQDPQMAVSIFSRLALVYLLVFVTYYLAHYTSNNFYLNCFLAIVYALCNSLFSMHMMHDS
CHAA---

---mvfthsnivlkigkll*xmvkmvqfvlvspqisirpltslvncllfssvssfhsvii
alqi*fvissllnsslvgisqlisklvmslkisnsllplkdqmnhlksmkigqsfnlkll
kimvmvhsfvpflvvl*iiklfiiyshqllkisthnlyql*kkfvknitllttlnqtslk
llchtlitftkwvxiqimlknh*pqk

Frame C:
yinrivikcqk*lqesntlgqs*pnitlkmivglqsmvkfmilqdgyhyiqvvkkfyf*q
qvemlqiylkviiqcqinqhqf*rimkldifhhmniqnlfknqistrh*krelenilkqp
ikihkwqlvfshv*hwfif*cl*lti*hiipvtifi*ivswqsfthfathysqci*cmih
vml---

---wylhtqisysrlgsfckxw*kwcnsc*crhkfr*grlrhw*ivfcflpfhpstpls*
lyrfnllfphc*irlwlvshn*fps*scr*rsqilcyp*ktr*tisnq*rlgnpst*nys
rlwswftplylf*wffkssscssfipincsrflpttctnckrsl*rt*hylph*tklh*s
yyvth*lplqng*xsrlc*ktislk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFO207 (VFO207Q) /CSM/VF/VFO2-A/VFO207Q.Seq.d/                       2254   0.0
VFK547 (VFK547Q) /CSM/VF/VFK5-B/VFK547Q.Seq.d/                       2232   0.0
VFN123 (VFN123Q) /CSM/VF/VFN1-A/VFN123Q.Seq.d/                       1197   0.0
VFM295 (VFM295Q) /CSM/VF/VFM2-D/VFM295Q.Seq.d/                       1197   0.0
VFI562 (VFI562Q) /CSM/VF/VFI5-C/VFI562Q.Seq.d/                       1197   0.0
VFE188 (VFE188Q) /CSM/VF/VFE1-D/VFE188Q.Seq.d/                       1197   0.0
SSB813 (SSB813Q) /CSM/SS/SSB8-A/SSB813Q.Seq.d/                       1197   0.0
SLA259 (SLA259Q) /CSM/SL/SLA2-C/SLA259Q.Seq.d/                       1197   0.0
SLA256 (SLA256Q) /CSM/SL/SLA2-C/SLA256Q.Seq.d/                       1197   0.0
CFC256 (CFC256Q) /CSM/CF/CFC2-C/CFC256Q.Seq.d/                       1197   0.0
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(CS204284) Sequence 45 from Patent EP1598422.                    1197   0.0    1
(BD092935) Methods and compositions for synthesis of long ch...  1197   0.0    1
(BD082645) Methods and compositions for synthesis of long ch...  1197   0.0    1
(BD082630) Methods and compositions for synthesis of long ch...  1197   0.0    1
(C25549) Dictyostelium discoideum slug cDNA, clone SLA256.       1197   0.0    1
(BJ435964) Dictyostelium discoideum cDNA clone:ddv29m02, 3' ...  1197   0.0    1
(BJ435453) Dictyostelium discoideum cDNA clone:ddv27m05, 3' ...  1197   0.0    1
(BJ435057) Dictyostelium discoideum cDNA clone:ddv25m24, 3' ...  1197   0.0    1
(BJ432422) Dictyostelium discoideum cDNA clone:ddv18k15, 3' ...  1197   0.0    1
(BJ431124) Dictyostelium discoideum cDNA clone:ddv9o21, 3' e...  1197   0.0    1
dna update 2009. 5.19
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q9Y1W0) RecName: Full=Delta(5) fatty acid desaturase A;        ...   422   e-116
(O96099) RecName: Full=Delta(5) fatty acid desaturase B;        ...   278   2e-73
(Q1ZXQ5) RecName: Full=Probable Delta(5) fatty acid desaturase C...   233   7e-60
AF419297_1(AF419297|pid:none) Pythium irregulare delta-5 fatty a...   158   4e-37
AB188307_1(AB188307|pid:none) Mortierella alpina gene for delta5...   152   2e-35
(O74212) RecName: Full=Delta(5) fatty acid desaturase;          ...   149   1e-34
CP000592_278(CP000592|pid:none) Ostreococcus lucimarinus CCE9901...   138   3e-31
CP001574_328(CP001574|pid:none) Micromonas sp. RCC299 chromosome...   131   5e-29
EF678404_1(EF678404|pid:none) Picea sitchensis clone WS0291_A04 ...   127   6e-28
CS020137_1(CS020137|pid:none) Sequence 91 from Patent WO20050123...   124   6e-27
protein update 2009. 6.25
PSORT 

 psg: 0.70  gvh: 0.24  alm: 0.25  top: 0.63  tms: 0.07  mit: 0.31  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.04  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 48.0 %: nuclear
	 28.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for VFO207 is nuc
5' end seq. ID VFO207F
5' end seq. 
>VFO207F.Seq
TATATATTAATAGAATTGTAATAAAATGTCAAAAGTAATTACAGGAAAGCAATACTCTTG
GTCAGAGTTAGCCAAACATAACACTGAAAATGATTGTTGGGTTGCAGTCGATGGTAAAGT
TTATGATATTACAAGATGGGTACCATTACATCCAGGTGGTAAAGAAGTTTTACTTTTAGC
AGCAGGTAGAGATGTTACAAATTTATTTGAAAGTTATCATCCAATGTCAGATAAACCAAC
ATCAATTTTAAAGAATTATGAAATTGGATATATTTCATCATATGAACATCCAAAATTTGT
TCAAAAATCAGATTTCTACAAGACATTAAAAGAGAGAGTTAGAAAACATTTTAAAGCAAC
CGATCAAGATCCACAAATGGCAGTTAGTATTTTCTCACGTTTAGCATTGGTTTATCTTTT
AGTGTTTGTAACTTACTATTTAGCACATTATACCAGTAACAATTTTTATTTAAATTGTTT
CTTGGCAATCGTTTACGCACTTTGCAACTCATTATTCTCAATGCATATGATGCATGATTC
ATGTCATGCTGCCNNNNNNNNNN
Length of 5' end seq. 563
3' end seq. ID VFO207Z
3' end seq. 
>VFO207Z.Seq
NNNNNNNNNNTATGGTATTTACACACTCAAATATCGTACTCAAGATTGGGAAGCTTTTGT
AAAGNATGGTAAAAATGGTGCAATTCGTGTTAGTGTCGCCACAAATTTCGATAAGGCCGC
TTACGTCATTGGTAAATTGTCTTTTGTTTTCTTCCGTTTCATCCTTCCACTCCGTTATCA
TAGCTTTACAGATTTAATTTGTTATTTCCTCATTGCTGAATTCGTCTTTGGTTGGTATCT
CACAATTAATTTCCAAGTTAGTCATGTCGCTGAAGATCTCAAATTCTTTGCTACCCCTGA
AAGACCAGATGAACCATCTCAAATCAATGAAGATTGGGCAATCCTTCAACTTAAAACTAC
TCAAGATTATGGTCATGGTTCACTCCTTTGTACCTTTTTTAGTGGTTCTTTAAATCATCA
AGTTGTTCATCATTTATTCCCATCAATTGCTCAAGATTTCTACCCACAACTTGTACCAAT
TGTAAAAGAAGTTTGTAAAGAACATAACATTACTTACCACATTAAACCAAACTTCACTGA
AGCTATTATGTCACACATTAATTACCTTTACAAAATGGGTAATNATCCAGATTATGTTAA
AAAACCATTAGCCTCAAAAG
Length of 3' end seq. 620
Connected seq. ID VFO207P
Connected seq. 
>VFO207P.Seq
TATATATTAATAGAATTGTAATAAAATGTCAAAAGTAATTACAGGAAAGCAATACTCTTG
GTCAGAGTTAGCCAAACATAACACTGAAAATGATTGTTGGGTTGCAGTCGATGGTAAAGT
TTATGATATTACAAGATGGGTACCATTACATCCAGGTGGTAAAGAAGTTTTACTTTTAGC
AGCAGGTAGAGATGTTACAAATTTATTTGAAAGTTATCATCCAATGTCAGATAAACCAAC
ATCAATTTTAAAGAATTATGAAATTGGATATATTTCATCATATGAACATCCAAAATTTGT
TCAAAAATCAGATTTCTACAAGACATTAAAAGAGAGAGTTAGAAAACATTTTAAAGCAAC
CGATCAAGATCCACAAATGGCAGTTAGTATTTTCTCACGTTTAGCATTGGTTTATCTTTT
AGTGTTTGTAACTTACTATTTAGCACATTATACCAGTAACAATTTTTATTTAAATTGTTT
CTTGGCAATCGTTTACGCACTTTGCAACTCATTATTCTCAATGCATATGATGCATGATTC
ATGTCATGCTGCC----------TATGGTATTTACACACTCAAATATCGTACTCAAGATT
GGGAAGCTTTTGTAAAGNATGGTAAAAATGGTGCAATTCGTGTTAGTGTCGCCACAAATT
TCGATAAGGCCGCTTACGTCATTGGTAAATTGTCTTTTGTTTTCTTCCGTTTCATCCTTC
CACTCCGTTATCATAGCTTTACAGATTTAATTTGTTATTTCCTCATTGCTGAATTCGTCT
TTGGTTGGTATCTCACAATTAATTTCCAAGTTAGTCATGTCGCTGAAGATCTCAAATTCT
TTGCTACCCCTGAAAGACCAGATGAACCATCTCAAATCAATGAAGATTGGGCAATCCTTC
AACTTAAAACTACTCAAGATTATGGTCATGGTTCACTCCTTTGTACCTTTTTTAGTGGTT
CTTTAAATCATCAAGTTGTTCATCATTTATTCCCATCAATTGCTCAAGATTTCTACCCAC
AACTTGTACCAATTGTAAAAGAAGTTTGTAAAGAACATAACATTACTTACCACATTAAAC
CAAACTTCACTGAAGCTATTATGTCACACATTAATTACCTTTACAAAATGGGTAATNATC
CAGATTATGTTAAAAAACCATTAGCCTCAAAAG
Length of connected seq. 1163
Full length Seq ID -
Full length Seq. -
Length of full length seq. -