VFO167
Library VF
(Link to library)
Clone ID VFO167
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14481-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>VFO167 (VFO167Q) /CSM/VF/VFO1-C/VFO167Q.Seq.d/
TCAAAAAGAAACTTTATTAAGAAAAGAATTGGATAATATTGAATTTCATAATCAATCTGC
AAAAGCATCATTATTATCAATGGGATTACCAGGATCAATTGAAGCATTAGATGTTGGTGT
NCCAGTAGCATTAAAAGAAAAGATGAATGTTGTTACAAATGAACAAGGNGTTAGTAATAT
AACTAGATTATTAGAGAATATTCAACAATTATCAGATGAAGATAGTGCAATTTGTTTATC
AGCTGGTAATCTATTGAAAAAGGAAGAAGATGAAGATAATTTAATGAGAGCAACCTATGG
TGCACAATGGCACAGAACTCCATCCTATACATTGACTGCAAATCTAACTCAAGATTATGC
AAAGTATACAAGTCATTTACAACATTCCACTAAATCTGATAGTTTTATTAGAAAGAAATT
TGAAGATCATAAAAATTCAATTCAAGAATTAGAGAATCAAACAGAGATCATTGCATTGTT
ACCAACCAATAATTTXXXXXXXXXX
sequence update 2001.11.22
Translated Amino Acid sequence
QKETLLRKELDNIEFHNQSAKASLLSMGLPGSIEALDVGVPVALKEKMNVVTNEQGVSNI
TRLLENIQQLSDEDSAICLSAGNLLKKEEDEDNLMRATYGAQWHRTPSYTLTANLTQDYA
KYTSHLQHSTKSDSFIRKKFEDHKNSIQELENQTEIIALLPTNN---


Translated Amino Acid sequence (All Frames)
Frame A:
skrnfikkrig*y*is*sicksiiiingitrin*sircwcxssikrkdeccyk*trx**y
n*iireystiir*r*cnlfisw*siekgrr*r*fnesnlwctmaqnsilyidcksnsrlc
kvyksfttfh*i**fy*kei*rs*kfnsriresnrdhcivtnq*---


Frame B:
QKETLLRKELDNIEFHNQSAKASLLSMGLPGSIEALDVGVPVALKEKMNVVTNEQGVSNI
TRLLENIQQLSDEDSAICLSAGNLLKKEEDEDNLMRATYGAQWHRTPSYTLTANLTQDYA
KYTSHLQHSTKSDSFIRKKFEDHKNSIQELENQTEIIALLPTNN---


Frame C:
kkkly*eknwiilnfiinlqkhhyyqwdyqdqlkh*mlvxq*h*kkr*mllqmnkxlvi*
ldy*rifnnyqmkivqfvyqlviy*krkkmkii**eqpmvhngtelhpih*lqi*lkimq
siqviyniplnlivllernlkiikiqfkn*rikqrslhcyqpii---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFO167 (VFO167Q) /CSM/VF/VFO1-C/VFO167Q.Seq.d/ 969 0.0
CHR644 (CHR644Q) /CSM/CH/CHR6-B/CHR644Q.Seq.d/ 466 e-130
VSB392 (VSB392Q) /CSM/VS/VSB3-D/VSB392Q.Seq.d/ 38 0.13
SSF136 (SSF136Q) /CSM/SS/SSF1-B/SSF136Q.Seq.d/ 38 0.13
CHQ457 (CHQ457Q) /CSM/CH/CHQ4-C/CHQ457Q.Seq.d/ 38 0.13
VSJ656 (VSJ656Q) /CSM/VS/VSJ6-C/VSJ656Q.Seq.d/ 36 0.49
VSG834 (VSG834Q) /CSM/VS/VSG8-B/VSG834Q.Seq.d/ 36 0.49
VSD182 (VSD182Q) /CSM/VS/VSD1-D/VSD182Q.Seq.d/ 36 0.49
VSB521 (VSB521Q) /CSM/VS/VSB5-A/VSB521Q.Seq.d/ 36 0.49
VSB513 (VSB513Q) /CSM/VS/VSB5-A/VSB513Q.Seq.d/ 36 0.49

own update 2004.12.24
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ417130) Dictyostelium discoideum cDNA clone:ddv29e17, 5' ... 969 0.0 1
(AF360741) Dictyostelium discoideum ALG-2 interacting protei... 839 0.0 2
(AC116551) Dictyostelium discoideum chromosome 2 map complem... 839 0.0 2
(BJ386158) Dictyostelium discoideum cDNA clone:ddc57g12, 3' ... 466 e-127 1
(AM424403) Vitis vinifera contig VV78X052924.6, whole genome... 36 0.21 2
(BX470259) Zebrafish DNA sequence from clone CH211-225N18 in... 48 0.32 1
(BX000702) Zebrafish DNA sequence from clone CH211-160D19 in... 48 0.32 1
(AM447194) Vitis vinifera contig VV78X145725.2, whole genome... 48 0.32 1
(CU855805) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 48 0.32 1
(CT573474) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 48 0.32 1
dna update 2009. 5.15
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q8T7K0) RecName: Full=ALG-2 interacting protein X; Sho... 324 6e-88
AE014297_4340(AE014297|pid:none) Drosophila melanogaster chromos... 81 1e-14
AB120526_1(AB120526|pid:none) Nicotiana tabacum HMA9 mRNA for AL... 74 3e-12
(Q9WU78) RecName: Full=Programmed cell death 6-interacting prote... 71 1e-11
BC051123_1(BC051123|pid:none) Mus musculus programmed cell death... 71 2e-11
AF119955_1(AF119955|pid:none) Mus musculus ALG-2 interacting pro... 71 2e-11
BC026823_1(BC026823|pid:none) Mus musculus programmed cell death... 71 2e-11
AC007591_7(AC007591|pid:none) Arabidopsis thaliana chromosome 1 ... 69 5e-11
AJ720564_1(AJ720564|pid:none) Gallus gallus mRNA for hypothetica... 69 5e-11
AK129340_1(AK129340|pid:none) Mus musculus mRNA for mKIAA1375 pr... 69 8e-11
protein update 2009. 6.25
PSORT

psg: 0.57 gvh: 0.64 alm: 0.42 top: 0.53 tms: 0.00 mit: 0.31 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.50 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: nuclear
36.0 %: cytoplasmic
8.0 %: mitochondrial
4.0 %: vesicles of secretory system
4.0 %: extracellular, including cell wall
4.0 %: endoplasmic reticulum

>> prediction for VFO167 is nuc

5' end seq. ID VFO167F
5' end seq.
>VFO167F.Seq
TCAAAAAGAAACTTTATTAAGAAAAGAATTGGATAATATTGAATTTCATAATCAATCTGC
AAAAGCATCATTATTATCAATGGGATTACCAGGATCAATTGAAGCATTAGATGTTGGTGT
NCCAGTAGCATTAAAAGAAAAGATGAATGTTGTTACAAATGAACAAGGNGTTAGTAATAT
AACTAGATTATTAGAGAATATTCAACAATTATCAGATGAAGATAGTGCAATTTGTTTATC
AGCTGGTAATCTATTGAAAAAGGAAGAAGATGAAGATAATTTAATGAGAGCAACCTATGG
TGCACAATGGCACAGAACTCCATCCTATACATTGACTGCAAATCTAACTCAAGATTATGC
AAAGTATACAAGTCATTTACAACATTCCACTAAATCTGATAGTTTTATTAGAAAGAAATT
TGAAGATCATAAAAATTCAATTCAAGAATTAGAGAATCAAACAGAGATCATTGCATTGTT
ACCAACCAATAATTTNNNNNNNNNN
Length of 5' end seq. 505
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -