VFO164 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

VFO164
Library	VF (Link to library)
Clone ID	VFO164 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U10135-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/VF/VFO1-C/VFO164Q.Seq.d/
Representative seq. ID	VFO164E (Link to Original site)
Representative DNA sequence	>VFO164 (VFO164Q) /CSM/VF/VFO1-C/VFO164Q.Seq.d/ AAGGGTTTACTCAAACAATTATCATCATATGTTGGTAAAGATATTACATCTTTAATCTCA TTACCAGTTTGGATTTTCGAACCAGTATCATTCTTACAAGTTATGTCCGAACCATTACAA TAGAACGCTTTATTATCTAAAGCCTCAAAACAAGATAGCGAATTTTTATGTTTAGCTTAT TTAGCTGCCTTCAATTGTGCATTATATAGTACTGCTGTTAGAACAAGAAAACCATTTAAT CCAATTTTAGGTGAAACCTTTGAAATTGTTGATAAAAAAGGTGAATTTAGATTCCTTGCA GAACAAGTTAGTCATCACCCACCAATTGGTGTATCAGAGACAATTTCAGAAGATTATACT CTTCAATTAGAAACATTATTGAAATCCAAATTCTATGGTAACTCATCAGAGGTTGAAATT GATGGTACCAATCATTTCTTCAATAAGAAGACCAACCACCATTACACATGGAATCATTTG GTAACTTGTTGTCATAACATTATCATTGGTTCATTATGGTTGGATCATTATGGTGATTTA GTCATCGAAAATCACACTACCGGTAGCAAGGCAGTACTCAAATTTGCTAAATCTGGTTGG TTAGGTGCCGGTCGTTATGGTGTCACTGGTGAAATTGTGGATTGTGAAGGTGATGTTAGA TACAGAATCACTGGTAAATGGAATGAATCCATTCAATTATTCCAAGTCATGGATAATGGT TCATCCTCTACCACTTCCACTTGTCTTTGGGAAGCCAGCAAAGAACCAATCAATAATAAA TTTTTATTCCCAAGATGGGTCGAAGAAAACGTTATTGATCTCAACGATGAATACAAAAAG ATATTACCAGTCACCGATTCTCGTCTTAGAGCAGATCGTATCGCTTTAGAAGAAGGTAAC TTGGATGTCGCAGCTAAAGAAAAACACAACTTGGAAGAGAAGCAAAGAGAAGACAAAAGA CAAAGAGTTGCTGAAAACAAAGAATGGGAAACTGCTCAATTTAAAAAAGTCGATGATGCT AAATTTGGTTACAGATGGAATTATTGTGGTAATTATTGGAAGAAAGAGAAGAAAGAGTTA AAGCAGCAGCTTCAAATTATAAAAACAATAATATTATAAGATTTTATCGTAAACAATTAT TCATTCAATTTCCGC
sequence update	2001.11.24
Translated Amino Acid sequence	kgllkqlssyvgkditslislpvwifepvsflqvmseplqNALLSKASKQDSEFLCLAY LAAFNCALYSTAVRTRKPFNPILGETFEIVDKKGEFRFLAEQVSHHPPIGVSETISEDYT LQLETLLKSKFYGNSSEVEIDGTNHFFNKKTNHHYTWNHLVTCCHNIIIGSLWLDHYGDL VIENHTTGSKAVLKFAKSGWLGAGRYGVTGEIVDCEGDVRYRITGKWNESIQLFQVMDNG SSSTTSTCLWEASKEPINNKFLFPRWVEENVIDLNDEYKKILPVTDSRLRADRIALEEGN LDVAAKEKHNLEEKQREDKRQRVAENKEWETAQFKKVDDAKFGYRWNYCGNYWKKEKKEL KQQLQIIKTIILdfivnnysfnfr
Translated Amino Acid sequence (All Frames)	Frame A: kgllkqlssyvgkditslislpvwifepvsflqvmseplqNALLSKASKQDSEFLCLAY LAAFNCALYSTAVRTRKPFNPILGETFEIVDKKGEFRFLAEQVSHHPPIGVSETISEDYT LQLETLLKSKFYGNSSEVEIDGTNHFFNKKTNHHYTWNHLVTCCHNIIIGSLWLDHYGDL VIENHTTGSKAVLKFAKSGWLGAGRYGVTGEIVDCEGDVRYRITGKWNESIQLFQVMDNG SSSTTSTCLWEASKEPINNKFLFPRWVEENVIDLNDEYKKILPVTDSRLRADRIALEEGN LDVAAKEKHNLEEKQREDKRQRVAENKEWETAQFKKVDDAKFGYRWNYCGNYWKKEKKEL KQQLQIIKTIILdfivnnysfnfr Frame B: rvysnnyhhmlvkilhlshyqfgfsnqyhsyklcpnhynrtlyylkpqnkianfyvli lpsivhyivllleqenhliqfvkplkllikkvnldslqnklvithqlvyqrqfqkiil fnkhynpnsmvthqrlklmvpiissirrpttithgiiwlvvitlslvhygwiimvi sskitlpvarqysnllnlvgvpvvmvslvklwivkvmldteslvngmnpfnyskswimv hplplplvfgkpaknqsiinfysqdgskktllistmntkryyqspilvleqivslkkvt wmsqlkknttwkrskektkdkellktkngkllnlkksmmlnlvtdgiivviigrkrrks* sssfklkqyykilstiihsis Frame C: gftqtiiiicwryyifnlitsldfrtsiiltsyvrtitierfiislktrrifmfslf sclqlciiyccnkktisnfrnlnckriipcrtsssptnwcirdnfrrlys sirniieiqilwlirgnwyqsflqedqpplhmesfgnllshyhwfimvgslwfs hrkshyrqgstqiciwlvrcrslwchwncglrciqnhwmeihsiipshgwf ilyhfhlslgsqqrtnqifipkmgrrkrysqriqkditshrfsssrsyrfrrrl gcrsrktqlgreakrrqktksckqrmgncsiksrciwlqmellw*lleereervk aaasnyknnniirfyrkqlfiqfp
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value VFO164 (VFO164Q) /CSM/VF/VFO1-C/VFO164Q.Seq.d/ 2290 0.0 SSK681 (SSK681Q) /CSM/SS/SSK6-D/SSK681Q.Seq.d/ 1612 0.0 SFA406 (SFA406Q) /CSM/SF/SFA4-A/SFA406Q.Seq.d/ 1205 0.0 VSJ126 (VSJ126Q) /CSM/VS/VSJ1-B/VSJ126Q.Seq.d/ 400 e-110 SSM876 (SSM876Q) /CSM/SS/SSM8-D/SSM876Q.Seq.d/ 321 1e-86 VHM658 (VHM658Q) /CSM/VH/VHM6-C/VHM658Q.Seq.d/ 206 6e-52 SLF279 (SLF279Q) /CSM/SL/SLF2-D/SLF279Q.Seq.d/ 111 2e-23 VSC690 (VSC690Q) /CSM/VS/VSC6-D/VSC690Q.Seq.d/ 86 1e-15 SLB835 (SLB835Q) /CSM/SL/SLB8-B/SLB835Q.Seq.d/ 42 0.019 FC-IC0810 (FC-IC0810Q) /CSM/FC-IC/FC-IC0810Q.Seq.d/ 42 0.019
own update	2002.12.19
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N (BJ417167) Dictyostelium discoideum cDNA clone:ddv29o15, 5' ... 1130 0.0 1 (BJ436053) Dictyostelium discoideum cDNA clone:ddv29o15, 3' ... 967 0.0 2 (BJ398596) Dictyostelium discoideum cDNA clone:dds1l02, 3' e... 563 0.0 8 (BJ387259) Dictyostelium discoideum cDNA clone:dds1l02, 5' e... 862 0.0 1 (C93999) Dictyostelium discoideum slug cDNA, clone SSK681. 438 e-172 4 (AU074433) Dictyostelium discoideum slug cDNA, clone SSK681. 476 e-129 1 (AU269442) Dictyostelium discoideum vegetative cDNA clone:VS... 149 9e-60 4 (C93251) Dictyostelium discoideum slug cDNA, clone SSM876. 149 9e-60 4 (AU269443) Dictyostelium discoideum vegetative cDNA clone:VS... 149 8e-54 3 (BJ444483) Dictyostelium discoideum cDNA clone:ddv56c16, 3' ... 143 2e-38 2
dna update	2009. 5.15
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value (Q54QP6) RecName: Full=Oxysterol-binding protein 8; AltName: Ful... 727 0.0 (Q54ID7) RecName: Full=Oxysterol-binding protein 11; AltName: Fu... 328 3e-88 AP008209_1059(AP008209\|pid:none) Oryza sativa (japonica cultivar... 235 3e-60 EU973920_1(EU973920\|pid:none) Zea mays clone 424251 oxysterol-bi... 233 1e-59 CP001324_588(CP001324\|pid:none) Micromonas sp. RCC299 chromosome... 230 6e-59 FJ617521_1(FJ617521\|pid:none) Capsicum annuum oxysterol-binding ... 228 4e-58 EF147666_1(EF147666\|pid:none) Populus trichocarpa clone WS0124_D... 227 7e-58 AC011436_15(AC011436\|pid:none) Arabidopsis thaliana chromosome I... 221 4e-56 AL162508_15(AL162508\|pid:none) Arabidopsis thaliana DNA chromoso... 218 2e-55 AM270258_12(AM270258\|pid:none) Aspergillus niger contig An12c001... 217 6e-55
protein update	2009. 7.11
PSORT	psg: 0.80 gvh: 0.52 alm: 0.37 top: 0.53 tms: 0.00 mit: 0.25 mip: 0.00 nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 48.0 %: cytoplasmic 40.0 %: nuclear 8.0 %: mitochondrial 4.0 %: peroxisomal >> prediction for VFO164 is cyt
5' end seq. ID	VFO164F
5' end seq.	>VFO164F.Seq AAGGGTTTACTCAAACAATTATCATCATATGTTGGTAAAGATATTACATCTTTAATCTCA TTACCAGTTTGGATTTTCGAACCAGTATCATTCTTACAAGTTATGTCCGAACCATTACAA TAGAACGCTTTATTATCTAAAGCCTCAAAACAAGATAGCGAATTTTTATGTTTAGCTTAT TTAGCTGCCTTCAATTGTGCATTATATAGTACTGCTGTTAGAACAAGAAAACCATTTAAT CCAATTTTAGGTGAAACCTTTGAAATTGTTGATAAAAAAGGTGAATTTAGATTCCTTGCA GAACAAGTTAGTCATCACCCACCAATTGGTGTATCAGAGACAATTTCAGAAGATTATACT CTTCAATTAGAAACATTATTGAAATCCAAATTCTATGGTAACTCATCAGAGGTTGAAATT GATGGTACCAATCATTTCTTCAATAAGAAGACCAACCACCATTACACATGGAATCATTTG GTAACTNGTTGTCATAACATTATCATTGGTTCATTATGGTTGGATCATTATGGTGATTTA GTCATCGAAAATCACACTACCGGTAGCAAGGCANNNNNNNNNN
Length of 5' end seq.	583
3' end seq. ID	VFO164Z
3' end seq.	>VFO164Z.Seq NNNNNNNNNNGTACCAATCATTTNTTCAATAAGAAGACCAACCACCATTACACATGGAAT CATTTGGTAACTTGTTGTCATAACATTATCATTGGTTCATTATGGTTGGATCATTATGGT GATTTAGTCATCGAAAATCACACTACCGGTAGCAAGGCAGTACTCAAATTTGCTAAATCT GGTTGGTTAGGTGCCGGTCGTTATGGTGTCACTGGTGAAATTGTGGATTGTGAAGGTGAT GTTAGATACAGAATCACTGGTAAATGGAATGAATCCATTCAATTATTCCAAGTCATGGAT AATGGTTCATCCTCTACCACTTCCACTTGTCTTTGGGAAGCCAGCAAAGAACCAATCAAT AATAAATTTTTATTCCCAAGATGGGTCGAAGAAAACGTTATTGATCTCAACGATGAATAC AAAAAGATATTACCAGTCACCGATTCTCGTCTTAGAGCAGATCGTATCGCTTTAGAAGAA GGTAACTTGGATGTCGCAGCTAAAGAAAAACACAACTTGGAAGAGAAGCAAAGAGAAGAC AAAAGACAAAGAGTTGCTGAAAACAAAGAATGGGAAACTGCTCAATTTAAAAAAGTCGAT GATGCTAAATTTGGTTACAGATGGAATTATTGTGGTAATTATTGGAAGAAAGAGAAGAAA GAGTTAAAGCAGCAGCTTCAAATTATAAAAACAATAATATTATAAGATTTTATCGTAAAC AATTATTCATTCAATTTCCGC
Length of 3' end seq.	741
Connected seq. ID	VFO164P
Connected seq.	>VFO164P.Seq AAGGGTTTACTCAAACAATTATCATCATATGTTGGTAAAGATATTACATCTTTAATCTCA TTACCAGTTTGGATTTTCGAACCAGTATCATTCTTACAAGTTATGTCCGAACCATTACAA TAGAACGCTTTATTATCTAAAGCCTCAAAACAAGATAGCGAATTTTTATGTTTAGCTTAT TTAGCTGCCTTCAATTGTGCATTATATAGTACTGCTGTTAGAACAAGAAAACCATTTAAT CCAATTTTAGGTGAAACCTTTGAAATTGTTGATAAAAAAGGTGAATTTAGATTCCTTGCA GAACAAGTTAGTCATCACCCACCAATTGGTGTATCAGAGACAATTTCAGAAGATTATACT CTTCAATTAGAAACATTATTGAAATCCAAATTCTATGGTAACTCATCAGAGGTTGAAATT GATGGTACCAATCATTTCTTCAATAAGAAGACCAACCACCATTACACATGGAATCATTTG GTAACTNGTTGTCATAACATTATCATTGGTTCATTATGGTTGGATCATTATGGTGATTTA GTCATCGAAAATCACACTACCGGTAGCAAGGCA----------GTACCAATCATTTNTTC AATAAGAAGACCAACCACCATTACACATGGAATCATTTGGTAACTTGTTGTCATAACATT ATCATTGGTTCATTATGGTTGGATCATTATGGTGATTTAGTCATCGAAAATCACACTACC GGTAGCAAGGCAGTACTCAAATTTGCTAAATCTGGTTGGTTAGGTGCCGGTCGTTATGGT GTCACTGGTGAAATTGTGGATTGTGAAGGTGATGTTAGATACAGAATCACTGGTAAATGG AATGAATCCATTCAATTATTCCAAGTCATGGATAATGGTTCATCCTCTACCACTTCCACT TGTCTTTGGGAAGCCAGCAAAGAACCAATCAATAATAAATTTTTATTCCCAAGATGGGTC GAAGAAAACGTTATTGATCTCAACGATGAATACAAAAAGATATTACCAGTCACCGATTCT CGTCTTAGAGCAGATCGTATCGCTTTAGAAGAAGGTAACTTGGATGTCGCAGCTAAAGAA AAACACAACTTGGAAGAGAAGCAAAGAGAAGACAAAAGACAAAGAGTTGCTGAAAACAAA GAATGGGAAACTGCTCAATTTAAAAAAGTCGATGATGCTAAATTTGGTTACAGATGGAAT TATTGTGGTAATTATTGGAAGAAAGAGAAGAAAGAGTTAAAGCAGCAGCTTCAAATTATA AAAACAATAATATTATAAGATTTTATCGTAAACAATTATTCATTCAATTTCCGC
Length of connected seq.	1304
Full length Seq ID	VFO164E
Full length Seq.	>VFO164E.Seq AAGGGTTTACTCAAACAATTATCATCATATGTTGGTAAAGATATTACATCTTTAATCTCA TTACCAGTTTGGATTTTCGAACCAGTATCATTCTTACAAGTTATGTCCGAACCATTACAA TAGAACGCTTTATTATCTAAAGCCTCAAAACAAGATAGCGAATTTTTATGTTTAGCTTAT TTAGCTGCCTTCAATTGTGCATTATATAGTACTGCTGTTAGAACAAGAAAACCATTTAAT CCAATTTTAGGTGAAACCTTTGAAATTGTTGATAAAAAAGGTGAATTTAGATTCCTTGCA GAACAAGTTAGTCATCACCCACCAATTGGTGTATCAGAGACAATTTCAGAAGATTATACT CTTCAATTAGAAACATTATTGAAATCCAAATTCTATGGTAACTCATCAGAGGTTGAAATT GATGGTACCAATCATTTCTTCAATAAGAAGACCAACCACCATTACACATGGAATCATTTG GTAACTTGTTGTCATAACATTATCATTGGTTCATTATGGTTGGATCATTATGGTGATTTA GTCATCGAAAATCACACTACCGGTAGCAAGGCAGTACTCAAATTTGCTAAATCTGGTTGG TTAGGTGCCGGTCGTTATGGTGTCACTGGTGAAATTGTGGATTGTGAAGGTGATGTTAGA TACAGAATCACTGGTAAATGGAATGAATCCATTCAATTATTCCAAGTCATGGATAATGGT TCATCCTCTACCACTTCCACTTGTCTTTGGGAAGCCAGCAAAGAACCAATCAATAATAAA TTTTTATTCCCAAGATGGGTCGAAGAAAACGTTATTGATCTCAACGATGAATACAAAAAG ATATTACCAGTCACCGATTCTCGTCTTAGAGCAGATCGTATCGCTTTAGAAGAAGGTAAC TTGGATGTCGCAGCTAAAGAAAAACACAACTTGGAAGAGAAGCAAAGAGAAGACAAAAGA CAAAGAGTTGCTGAAAACAAAGAATGGGAAACTGCTCAATTTAAAAAAGTCGATGATGCT AAATTTGGTTACAGATGGAATTATTGTGGTAATTATTGGAAGAAAGAGAAGAAAGAGTTA AAGCAGCAGCTTCAAATTATAAAAACAATAATATTATAAGATTTTATCGTAAACAATTAT TCATTCAATTTCCGC
Length of full length seq.	1155

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas