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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFO152
Library VF
(Link to library)
Clone ID VFO152
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16294-1
Original site URL
Representative seq. ID VFO152P
(Link to Original site)
Representative DNA sequence 
>VFO152 (VFO152Q) /CSM/VF/VFO1-C/VFO152Q.Seq.d/
AATTGATAAAATTAAATTAAATAAAATGTCATTAAATATTGAAAAAGTTAAAGAATTTAG
TAATAAAGCATGGGATGAAAATATTTTACCAACACTTTCAAAATATATTGAAATTCCAAA
TCAATCACCATTATATGATGCAGAATGGGCAACCAATGGTTATACAGAAGAAGCAATTCA
ATTATTAGAGAAATGGATCTTAGCACAAGGTATCAAAGGTATTTCATGTGAAATTAAAAG
AATTGAAGGATTAACACCAATTATTTTCATGGTAGTCGAAGCAACCAAAACTGAAAAAGT
TAAAACTGTACTTTTATATGGTCACATGGATAAACAACCACCACTCACTGATGCATGGGA
TGAAGGATTACATCCATACAAAGCAGTCATCAAGAATAACAAACTCTATGGTCGTGGTGG
TGCAGATGATGGTTATTCAACATTTGCTTCAATCTCTGCAATCAAAGCATTGCAAGAACA
ATCAATTCCACATGATCGTTATGTAATTATCATTGAAGGTTCCGAAGAATCTGGTTCAAT
CCATTTACCACAATATGTTGAGAAGTTCCAAGCTGAAATTCAAATTCCATCATTGGTAXX
XXXXXXXXAAAAGATTACACGTTGAAATTCCACAACATCGTTTAGATCAAATCGCAAAAA
TGTGCTGAAATTTTAGGCGAAACCATCTATGATGAATTCTCATGGTACAAAAATACCACT
CCAGTCACTAAAGATTTAACCCAATTGATGATCAACAAAACTTGGTATCCAACTATTTGC
ATCACCGGTGCTGAAGGTATTCCACACACTTCAAATGCTGGTAATGTCATGAGAACTCAC
ACCACCGTTAAAGTTAGTGTTCGTTTACCACCATCATTCAAAGCAGCTGATGCATCAACT
GTATTAAAAGAAATTTTCGAAACTAATCCACCATATGGTGCTGAAGTTACCTTCAAAATG
GATAAATGTGCTTCAGGTTGGGATTCACCACAAACTAGACCAGAATTAGAAAAAGCATTA
GGAGAAGCTTCAAATCTTTTCTTTGGCAAAGACCACGTATACATGGGTGAAGGTGGTTCC
ATCCCATTCATGAAAATGTTACATGACCGTTTCAATTGTCAATTTATCGTTACTGGTTTA
TTAGGTCCAGGTTCAAATGCTCATGGTCCAAATGAATTCTTAGATATTCCATTTGCCAAG
AAATTATTAAGTTGTGTTATTTATTTATTAGATGCTCATTCCAAGTTNATTAAATAAA
sequence update 2001.11.22
Translated Amino Acid sequence 
IDKIKLNKMSLNIEKVKEFSNKAWDENILPTLSKYIEIPNQSPLYDAEWATNGYTEEAIQ
LLEKWILAQGIKGISCEIKRIEGLTPIIFMVVEATKTEKVKTVLLYGHMDKQPPLTDAWD
EGLHPYKAVIKNNKLYGRGGADDGYSTFASISAIKALQEQSIPHDRYVIIIEGSEESGSI
HLPQYVEKFQAEIQIPSLV---

---KRLHVEIPQHRLDQIAKMC*nfrrnhl**ilmvqkyhssh*rfnpiddqqnlvsnyl
hhrc*rysthfkcw*chenshhr*s*csfttiiqss*cincikrnfrn*stiwc*sylqn
g*mcfrlgfttn*trirksirrsfksflwqrprihg*rwfhpihenvt*pfqlsiyrywf
irsrfkcswsk*ilrysicqeiiklcylfircsfqvx*i
Translated Amino Acid sequence (All Frames) 
Frame A:
n**n*ik*nviky*ks*ri***smg*kyftntfkiy*nsksitii*crmgnqwlyrrsns
iiremdlstryqryfm*n*kn*rintnyfhgsrsnqn*ks*nctfiwshg*tttth*cmg
*ritsiqsshqe*qtlwswwcr*wlfnicfnlcnqsiartinst*slcnyh*rfrriwfn
pfttic*evps*nsnsiig---

---KRLHVEIPQHRLDQIAKMC*nfrrnhl**ilmvqkyhssh*rfnpiddqqnlvsnyl
hhrc*rysthfkcw*chenshhr*s*csfttiiqss*cincikrnfrn*stiwc*sylqn
g*mcfrlgfttn*trirksirrsfksflwqrprihg*rwfhpihenvt*pfqlsiyrywf
irsrfkcswsk*ilrysicqeiiklcylfircsfqvx*i

Frame B:
IDKIKLNKMSLNIEKVKEFSNKAWDENILPTLSKYIEIPNQSPLYDAEWATNGYTEEAIQ
LLEKWILAQGIKGISCEIKRIEGLTPIIFMVVEATKTEKVKTVLLYGHMDKQPPLTDAWD
EGLHPYKAVIKNNKLYGRGGADDGYSTFASISAIKALQEQSIPHDRYVIIIEGSEESGSI
HLPQYVEKFQAEIQIPSLV---

---kdytlkfhniv*iksqkcaeilgetiydefswyknttpvtkdltqlminktwyptic
itgaegiphtsnagnvmrthttvkvsvrlppsfkaadastvlkeifetnppygaevtfkm
dkcasgwdspqtrpelekalgeasnlffgkdhvymgeggsipfmkmlhdrfncqfivtgl
lgpgsnahgpnefldipfakkllscviylldahskxik*

Frame C:
likln*ikch*ilkklknlvikhgmkifyqhfqnilkfqinhhymmqngqpmviqkkqfn
y*rngs*hkvskvfhvklkelkd*hqlfsw*skqpklkklklyfymvtwinnhhslmhgm
kdyihtkqssritnsmvvvvqmmviqhllqslqskhcknnqfhmivm*lslkvpknlvqs
iyhnmlrssklkfkfhhw---

---kitr*nsttsfrsnrknvlkf*akpsmmnshgtkiplqslki*pn**stklgiqlfa
spvlkvfhtlqmlvms*eltpplklvfvyhhhskqlmhqly*kkfsklihhmvlklpskw
invlqvgihhkldqn*kkh*eklqifslakttytwvkvvpshs*kcymtvsivnlsllvy
*vqvqmlmvqmns*ifhlprny*vvlfiy*mlipsxlnk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFO152 (VFO152Q) /CSM/VF/VFO1-C/VFO152Q.Seq.d/                       2315   0.0
VFN247 (VFN247Q) /CSM/VF/VFN2-B/VFN247Q.Seq.d/                       1267   0.0
VFI895 (VFI895Q) /CSM/VF/VFI8-D/VFI895Q.Seq.d/                       1267   0.0
VFI168 (VFI168Q) /CSM/VF/VFI1-C/VFI168Q.Seq.d/                       1267   0.0
SFG808 (SFG808Q) /CSM/SF/SFG8-A/SFG808Q.Seq.d/                       1267   0.0
SFF785 (SFF785Q) /CSM/SF/SFF7-D/SFF785Q.Seq.d/                       1267   0.0
CFK209 (CFK209Q) /CSM/CF/CFK2-A/CFK209Q.Seq.d/                       1267   0.0
CFJ404 (CFJ404Q) /CSM/CF/CFJ4-A/CFJ404Q.Seq.d/                       1267   0.0
CFC744 (CFC744Q) /CSM/CF/CFC7-B/CFC744Q.Seq.d/                       1267   0.0
AFO706 (AFO706Q) /CSM/AF/AFO7-A/AFO706Q.Seq.d/                       1267   0.0
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ436030) Dictyostelium discoideum cDNA clone:ddv29g13, 3' ...  1283   0.0    1
(BJ435532) Dictyostelium discoideum cDNA clone:ddv27m12, 3' ...  1187   0.0    2
(BJ435036) Dictyostelium discoideum cDNA clone:ddv25i22, 3' ...  1187   0.0    2
(BJ433712) Dictyostelium discoideum cDNA clone:ddv22p17, 3' ...  1187   0.0    2
(BJ432524) Dictyostelium discoideum cDNA clone:ddv18n24, 3' ...  1187   0.0    2
(BJ432087) Dictyostelium discoideum cDNA clone:ddv17g17, 3' ...  1187   0.0    2
(BJ400662) Dictyostelium discoideum cDNA clone:dds14p02, 3' ...  1187   0.0    2
(BJ398546) Dictyostelium discoideum cDNA clone:dds12j21, 3' ...  1187   0.0    2
(BJ376041) Dictyostelium discoideum cDNA clone:ddc21a04, 3' ...  1187   0.0    2
(BJ375536) Dictyostelium discoideum cDNA clone:ddc19h02, 3' ...  1187   0.0    2
dna update 2009. 5.15
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ384330_1(DQ384330|pid:none) Hartmannella vermiformis succinyl-...   201   6e-50
CP001111_978(CP001111|pid:none) Stenotrophomonas maltophilia R55...   199   2e-49
AM743169_1072(AM743169|pid:none) Stenotrophomonas maltophilia K2...   196   1e-48
CP000113_526(CP000113|pid:none) Myxococcus xanthus DK 1622, comp...   195   3e-48
AM746676_157(AM746676|pid:none) Sorangium cellulosum 'So ce 56' ...   195   3e-48
AE008923_2905(AE008923|pid:none) Xanthomonas axonopodis pv. citr...   194   4e-48
DQ384331_1(DQ384331|pid:none) Physarum polycephalum succinyl-dia...   193   9e-48
AM039952_3097(AM039952|pid:none) Xanthomonas campestris pv. vesi...   192   2e-47
AE016828_97(AE016828|pid:none) Coxiella burnetii RSA 493, comple...   184   6e-45
CP001020_1727(CP001020|pid:none) Coxiella burnetii CbuK_Q154, co...   184   6e-45
protein update 2009. 6.25
PSORT 

 psg: 0.66  gvh: 0.29  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 28.0 %: nuclear
	 16.0 %: cytoskeletal
	  4.0 %: extracellular, including cell wall
	  4.0 %: mitochondrial

>> prediction for VFO152 is cyt
5' end seq. ID VFO152F
5' end seq. 
>VFO152F.Seq
AATTGATAAAATTAAATTAAATAAAATGTCATTAAATATTGAAAAAGTTAAAGAATTTAG
TAATAAAGCATGGGATGAAAATATTTTACCAACACTTTCAAAATATATTGAAATTCCAAA
TCAATCACCATTATATGATGCAGAATGGGCAACCAATGGTTATACAGAAGAAGCAATTCA
ATTATTAGAGAAATGGATCTTAGCACAAGGTATCAAAGGTATTTCATGTGAAATTAAAAG
AATTGAAGGATTAACACCAATTATTTTCATGGTAGTCGAAGCAACCAAAACTGAAAAAGT
TAAAACTGTACTTTTATATGGTCACATGGATAAACAACCACCACTCACTGATGCATGGGA
TGAAGGATTACATCCATACAAAGCAGTCATCAAGAATAACAAACTCTATGGTCGTGGTGG
TGCAGATGATGGTTATTCAACATTTGCTTCAATCTCTGCAATCAAAGCATTGCAAGAACA
ATCAATTCCACATGATCGTTATGTAATTATCATTGAAGGTTCCGAAGAATCTGGTTCAAT
CCATTTACCACAATATGTTGAGAAGTTCCAAGCTGAAATTCAAATTCCATCATTGGTANN
NNNNNNNN
Length of 5' end seq. 608
3' end seq. ID VFO152Z
3' end seq. 
>VFO152Z.Seq
NNNNNNNNNNAAAAGATTACACGTTGAAATTCCACAACATCGTTTAGATCAAATCGCAAA
AATGTGCTGAAATTTTAGGCGAAACCATCTATGATGAATTCTCATGGTACAAAAATACCA
CTCCAGTCACTAAAGATTTAACCCAATTGATGATCAACAAAACTTGGTATCCAACTATTT
GCATCACCGGTGCTGAAGGTATTCCACACACTTCAAATGCTGGTAATGTCATGAGAACTC
ACACCACCGTTAAAGTTAGTGTTCGTTTACCACCATCATTCAAAGCAGCTGATGCATCAA
CTGTATTAAAAGAAATTTTCGAAACTAATCCACCATATGGTGCTGAAGTTACCTTCAAAA
TGGATAAATGTGCTTCAGGTTGGGATTCACCACAAACTAGACCAGAATTAGAAAAAGCAT
TAGGAGAAGCTTCAAATCTTTTCTTTGGCAAAGACCACGTATACATGGGTGAAGGTGGTT
CCATCCCATTCATGAAAATGTTACATGACCGTTTCAATTGTCAATTTATCGTTACTGGTT
TATTAGGTCCAGGTTCAAATGCTCATGGTCCAAATGAATTCTTAGATATTCCATTTGCCA
AGAAATTATTAAGTTGTGTTATTTATTTATTAGATGCTCATTCCAAGTTNATTAAATAAA
Length of 3' end seq. 660
Connected seq. ID VFO152P
Connected seq. 
>VFO152P.Seq
AATTGATAAAATTAAATTAAATAAAATGTCATTAAATATTGAAAAAGTTAAAGAATTTAG
TAATAAAGCATGGGATGAAAATATTTTACCAACACTTTCAAAATATATTGAAATTCCAAA
TCAATCACCATTATATGATGCAGAATGGGCAACCAATGGTTATACAGAAGAAGCAATTCA
ATTATTAGAGAAATGGATCTTAGCACAAGGTATCAAAGGTATTTCATGTGAAATTAAAAG
AATTGAAGGATTAACACCAATTATTTTCATGGTAGTCGAAGCAACCAAAACTGAAAAAGT
TAAAACTGTACTTTTATATGGTCACATGGATAAACAACCACCACTCACTGATGCATGGGA
TGAAGGATTACATCCATACAAAGCAGTCATCAAGAATAACAAACTCTATGGTCGTGGTGG
TGCAGATGATGGTTATTCAACATTTGCTTCAATCTCTGCAATCAAAGCATTGCAAGAACA
ATCAATTCCACATGATCGTTATGTAATTATCATTGAAGGTTCCGAAGAATCTGGTTCAAT
CCATTTACCACAATATGTTGAGAAGTTCCAAGCTGAAATTCAAATTCCATCATTGGTA--
--------AAAAGATTACACGTTGAAATTCCACAACATCGTTTAGATCAAATCGCAAAAA
TGTGCTGAAATTTTAGGCGAAACCATCTATGATGAATTCTCATGGTACAAAAATACCACT
CCAGTCACTAAAGATTTAACCCAATTGATGATCAACAAAACTTGGTATCCAACTATTTGC
ATCACCGGTGCTGAAGGTATTCCACACACTTCAAATGCTGGTAATGTCATGAGAACTCAC
ACCACCGTTAAAGTTAGTGTTCGTTTACCACCATCATTCAAAGCAGCTGATGCATCAACT
GTATTAAAAGAAATTTTCGAAACTAATCCACCATATGGTGCTGAAGTTACCTTCAAAATG
GATAAATGTGCTTCAGGTTGGGATTCACCACAAACTAGACCAGAATTAGAAAAAGCATTA
GGAGAAGCTTCAAATCTTTTCTTTGGCAAAGACCACGTATACATGGGTGAAGGTGGTTCC
ATCCCATTCATGAAAATGTTACATGACCGTTTCAATTGTCAATTTATCGTTACTGGTTTA
TTAGGTCCAGGTTCAAATGCTCATGGTCCAAATGAATTCTTAGATATTCCATTTGCCAAG
AAATTATTAAGTTGTGTTATTTATTTATTAGATGCTCATTCCAAGTTNATTAAATAAA
Length of connected seq. 1248
Full length Seq ID -
Full length Seq. -
Length of full length seq. -