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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFN285
Library AF
(Link to library)
Clone ID AFN285
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID AFN285P
(Link to Original site)
Representative DNA sequence 
>AFN285 (AFN285Q) /CSM/AF/AFN2-D/AFN285Q.Seq.d/
AAATTAATTATTTTTTTTATCTTCATTATATACAATTTAATTTCATTAATTTTTTAATGG
CAAAACTAAAAATAATTATTTATATTGTAATAATTTTTTGTAGTAGTATCCAATTTTCTT
TTGGATACGAAAAGGCGATTGCTTCATTTTATCCACCTCCAGGTGATTTGCATCCCACTA
CTCATAATTTTTGGGCATGTAATAGTGTCATTAACCAAAACGGTGGATTCGGTCCACTTG
AATGCAATAATGCCGGTATCTATGCAATTTTCTCGACCGCCAATGAGATCATCGACGGTA
ATGAATACATGCTTCCACTATTTTATATTGGAAGATCCACTATAGATGTTCGAGATAGAA
TTGCTGATCACAGTAGACGAAACCATGTTGATAATGATTTCATTGTGTGTTATATGCGTT
TCCCAGCATTGGATGATTATGGTTACAGTAACAAAGTAACACCCGTTGAACAAGCTCTCC
TTCACCAATTCAAAACTCAATTCAACTCATGGGATAACCCTCGGTTTTGATCCACAGTAT
GATACTGCTTATCCAGATGAAAATGGTTTGGGATGGGATATCCTTGCATCTTTTTATAAT
ATGGATATCAATGCTCCATCTTTTXXXXXXXXXXCNCAAAAAGCTGGCAACGGNGCNCGT
AATTATGCTAATNAAGGTTACAATTCCGTNANANATGGNGCNCAAAAAGCTGGCAACGGN
GCACGTAATTATGCTCAACAAGGTTNTCAAGCATGGAAANAAGGNGTCAATNANATTGGT
GATGANATCGCCAATACTGCNCATNATGTAGGTGATGGTTTCGCCNATACTGCNCGTNAA
GTAGGTGATGGAATTANAATCCCTGCANAGGAGGGATATGAACTCNTTAAANATGGAGCT
GAANAAACTTGGGTNAANAAATATTAAAGGTTATCCTTAATTNAAATTNAAAAAGCCCNA
CAAANAATGGCTGAACAANAANAAANAANAAGGTTTATGCAANAANAAAGTNAAANAANA
CGATTGCAAANAAACANANAAAGACNANAGCCNATTAGAACTTA
sequence update 2009. 4. 3
Translated Amino Acid sequence 
kliiffifiiynlislif*wqn*k*lfil**ffvvvsnflldtkrrllhfihlqvicipl
liifghvivsltktvdsvhlnaimpvsmqfsrppmrsstvmntcfhyfiledpl*mfeie
llitvdetmlimislcvicvsqhwmimvtvtk*HPLNKLSFTNSKLNSTHGITLGFDPQY
DTAYPDENGLGWDILASFYNMDINAPSF---

---QKAGNGARNYANXGYNSVXXGAQKAGNGARNYAQQGXQAWKXGVNXIGDXIANTAHX
VGDGFAXTARXVGDGIXIPAXEGYELXKXGAEXTWVXKY*rlslixixkaxqxmaeqxxx
xrfmqxxsxxxrlqxnxxrxxpirt
Translated Amino Acid sequence (All Frames) 
Frame A:
kliiffifiiynlislif*wqn*k*lfil**ffvvvsnflldtkrrllhfihlqvicipl
liifghvivsltktvdsvhlnaimpvsmqfsrppmrsstvmntcfhyfiledpl*mfeie
llitvdetmlimislcvicvsqhwmimvtvtk*HPLNKLSFTNSKLNSTHGITLGFDPQY
DTAYPDENGLGWDILASFYNMDINAPSF---

---xkklatxxvimlxkvtipxxmxxkklatxhvimlnkvxkhgxkxsxxlvmxspilxx
m*vmvspilxvk*vmelxslxrrdmnslxmelxklgxxnikgyp*xkxkkpxkxwlnxxk
xxglcxxkvkxxdckxtxkdxsxlel

Frame B:
n*lfflsslyti*fh*ffngktknnylycnnfl**ypiffwirkgdcfilstsr*fashy
s*flgm**ch*pkrwirst*mq*crylcnfldrq*dhrr**ihastilywkihyrcsr*n
c*sq*tkpc***fhcvlyafpsig*lwlq*qsntr*tsspspiqnsiqlmg*psvlihsm
illiqmkmvwdgislhlfiiwismlhl---

---xkswqrxx*lc*xrlqfrxxwxxkswqrxt*lcstrxssmexrxqxxw**xrqycxx
cr*wfrxycxxsr*wnxnpcxggi*tx*xws*xnlgxxilkvilnxnxksptxng*txxx
xkvyaxxkxxxtiaxkxxktxax*nl

Frame C:
inyffylhyiqfnfinflmaklkiiiyiviifcssiqfsfgyekaiasfypppgdlhptt
hnfwacnsvinqnggfgplecnnagiyaifstaneiidgneymlplfyigrstidvrdri
adhsrrnhvdndfivcymrfpalddygysnkvtpveqallhqfktqfnswdnprf*stv*
yclsr*kwfgmgypcifl*ygyqcsif---

---QKAGNGARNYANXGYNSVXXGAQKAGNGARNYAQQGXQAWKXGVNXIGDXIANTAHX
VGDGFAXTARXVGDGIXIPAXEGYELXKXGAEXTWVXKY*rlslixixkaxqxmaeqxxx
xrfmqxxsxxxrlqxnxxrxxpirt
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFN285 (AFN285Q) /CSM/AF/AFN2-D/AFN285Q.Seq.d/                       1735   0.0
SFK831 (SFK831Q) /CSM/SF/SFK8-B/SFK831Q.Seq.d/                       1201   0.0
SFK115 (SFK115Q) /CSM/SF/SFK1-A/SFK115Q.Seq.d/                       1201   0.0
SFJ550 (SFJ550Q) /CSM/SF/SFJ5-C/SFJ550Q.Seq.d/                       1201   0.0
SFJ191 (SFJ191Q) /CSM/SF/SFJ1-D/SFJ191Q.Seq.d/                       1201   0.0
SFG762 (SFG762Q) /CSM/SF/SFG7-C/SFG762Q.Seq.d/                       1201   0.0
SFG737 (SFG737Q) /CSM/SF/SFG7-B/SFG737Q.Seq.d/                       1201   0.0
SFE450 (SFE450Q) /CSM/SF/SFE4-C/SFE450Q.Seq.d/                       1201   0.0
SFD458 (SFD458Q) /CSM/SF/SFD4-C/SFD458Q.Seq.d/                       1201   0.0
CFJ236 (CFJ236Q) /CSM/CF/CFJ2-B/CFJ236Q.Seq.d/                       1201   0.0
own update 2009. 4. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ388433) Dictyostelium discoideum cDNA clone:dds9d14, 5' e...  1041   0.0    2
(BJ330243) Dictyostelium discoideum cDNA clone:dda27i22, 5' ...  1041   0.0    2
(BJ390099) Dictyostelium discoideum cDNA clone:dds21m03, 5' ...  1041   0.0    2
(BJ361913) Dictyostelium discoideum cDNA clone:ddc19g10, 5' ...  1041   0.0    2
(BJ326867) Dictyostelium discoideum cDNA clone:dda18g08, 5' ...  1041   0.0    2
(BJ359343) Dictyostelium discoideum cDNA clone:ddc13p23, 5' ...  1041   0.0    2
(BJ390441) Dictyostelium discoideum cDNA clone:dds22n08, 5' ...  1041   0.0    2
(BJ389710) Dictyostelium discoideum cDNA clone:dds19e23, 5' ...  1041   0.0    2
(BJ327540) Dictyostelium discoideum cDNA clone:dda20f22, 5' ...  1041   0.0    2
(BJ390616) Dictyostelium discoideum cDNA clone:dds23h04, 5' ...  1041   0.0    2
dna update 2009. 4.16
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 1,397,529,481
protein update 2009. 4. 6
PSORT 

 psg: 0.00  gvh: 0.00  alm: 0.00  top: 0.00  tms: 0.00  mit: 0.00  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	100.0 %: 

>> prediction for AFN285 is

5' end seq. ID AFN285F
5' end seq. 
>AFN285F.Seq
AAATTAATTATTTTTTTTATCTTCATTATATACAATTTAATTTCATTAATTTTTTAATGG
CAAAACTAAAAATAATTATTTATATTGTAATAATTTTTTGTAGTAGTATCCAATTTTCTT
TTGGATACGAAAAGGCGATTGCTTCATTTTATCCACCTCCAGGTGATTTGCATCCCACTA
CTCATAATTTTTGGGCATGTAATAGTGTCATTAACCAAAACGGTGGATTCGGTCCACTTG
AATGCAATAATGCCGGTATCTATGCAATTTTCTCGACCGCCAATGAGATCATCGACGGTA
ATGAATACATGCTTCCACTATTTTATATTGGAAGATCCACTATAGATGTTCGAGATAGAA
TTGCTGATCACAGTAGACGAAACCATGTTGATAATGATTTCATTGTGTGTTATATGCGTT
TCCCAGCATTGGATGATTATGGTTACAGTAACAAAGTAACACCCGTTGAACAAGCTCTCC
TTCACCAATTCAAAACTCAATTCAACTCATGGGATAACCCTCGGTTTTGATCCACAGTAT
GATACTGCTTATCCAGATGAAAATGGTTTGGGATGGGATATCCTTGCATCTTTTTATAAT
ATGGATATCAATGCTCCATCTTTTXXXXXXXXXX
Length of 5' end seq. 634
3' end seq. ID AFN285Z
3' end seq. 
>AFN285Z.Seq
XXXXXXXXXXCNCAAAAAGCTGGCAACGGNGCNCGTAATTATGCTAATNAAGGTTACAAT
TCCGTNANANATGGNGCNCAAAAAGCTGGCAACGGNGCACGTAATTATGCTCAACAAGGT
TNTCAAGCATGGAAANAAGGNGTCAATNANATTGGTGATGANATCGCCAATACTGCNCAT
NATGTAGGTGATGGTTTCGCCNATACTGCNCGTNAAGTAGGTGATGGAATTANAATCCCT
GCANAGGAGGGATATGAACTCNTTAAANATGGAGCTGAANAAACTTGGGTNAANAAATAT
TAAAGGTTATCCTTAATTNAAATTNAAAAAGCCCNACAAANAATGGCTGAACAANAANAA
ANAANAAGGTTTATGCAANAANAAAGTNAAANAANACGATTGCAAANAAACANANAAAGA
CNANAGCCNATTAGAACTTA
Length of 3' end seq. 440
Connected seq. ID AFN285P
Connected seq. 
>AFN285P.Seq
AAATTAATTATTTTTTTTATCTTCATTATATACAATTTAATTTCATTAATTTTTTAATGG
CAAAACTAAAAATAATTATTTATATTGTAATAATTTTTTGTAGTAGTATCCAATTTTCTT
TTGGATACGAAAAGGCGATTGCTTCATTTTATCCACCTCCAGGTGATTTGCATCCCACTA
CTCATAATTTTTGGGCATGTAATAGTGTCATTAACCAAAACGGTGGATTCGGTCCACTTG
AATGCAATAATGCCGGTATCTATGCAATTTTCTCGACCGCCAATGAGATCATCGACGGTA
ATGAATACATGCTTCCACTATTTTATATTGGAAGATCCACTATAGATGTTCGAGATAGAA
TTGCTGATCACAGTAGACGAAACCATGTTGATAATGATTTCATTGTGTGTTATATGCGTT
TCCCAGCATTGGATGATTATGGTTACAGTAACAAAGTAACACCCGTTGAACAAGCTCTCC
TTCACCAATTCAAAACTCAATTCAACTCATGGGATAACCCTCGGTTTTGATCCACAGTAT
GATACTGCTTATCCAGATGAAAATGGTTTGGGATGGGATATCCTTGCATCTTTTTATAAT
ATGGATATCAATGCTCCATCTTTT----------CNCAAAAAGCTGGCAACGGNGCNCGT
AATTATGCTAATNAAGGTTACAATTCCGTNANANATGGNGCNCAAAAAGCTGGCAACGGN
GCACGTAATTATGCTCAACAAGGTTNTCAAGCATGGAAANAAGGNGTCAATNANATTGGT
GATGANATCGCCAATACTGCNCATNATGTAGGTGATGGTTTCGCCNATACTGCNCGTNAA
GTAGGTGATGGAATTANAATCCCTGCANAGGAGGGATATGAACTCNTTAAANATGGAGCT
GAANAAACTTGGGTNAANAAATATTAAAGGTTATCCTTAATTNAAATTNAAAAAGCCCNA
CAAANAATGGCTGAACAANAANAAANAANAAGGTTTATGCAANAANAAAGTNAAANAANA
CGATTGCAAANAAACANANAAAGACNANAGCCNATTAGAACTTA
Length of connected seq. 1054
Full length Seq ID -
Full length Seq. -
Length of full length seq. -