NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFB560
Library AF
(Link to library)
Clone ID AFB560
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16294-1
Original site URL
Representative seq. ID AFB560P
(Link to Original site)
Representative DNA sequence 
>AFB560 (AFB560Q) /CSM/AF/AFB5-C/AFB560Q.Seq.d/
ATTAAATAAAATGTCATTAAATATTGAAAAAGTTAAAGAATTTAGTAATAAAGCATGGGA
TGAAAATATTTTACCAACACTTTCAAAATATATTGAAATTCCAAATCAATCACCATTATA
TGATGCAGAATGGGCAACCAATGGTTATACAGXXXXXXXXXXGGTGAAGTCGATAAAAGA
TTACACGTTGAAATTCCACAACATCGTTTAGATCAAATCGCAAAATGTGCTGAAATTTTA
GGCGAAACCATCTATGATGAATTCTCATGGTACAAAAATACCACTCCAGTCACTAAAGAT
TTAACCCAATTGATGATCAACAAAACTTGGTATCCAACTATTTGCATCACCGGTGCTGAA
GGTATTCCACACACTTCAAATGCTGGTAATGTCATGAGAACTCACACCACCGTTAAAGTT
AGTGTTCGTTTACCACCATCATTCAAAGCAGCTGATGCATCAACTGTATTAAAAGAAATT
TTCGAAACTAATCCGCCATATGGTGCTGAAGTTACCTTCAAAATGGATAAATGTGCTTCA
GGTTGGGATTCACCACAAACTAGACCAGAATTAGAAAAAGCATTAGGAGAAGCTTCAAAT
CTTTTCTTTGGCAAAGACCACGTATACATGGGTGAAGGTGGTTCCATCCCATTCATGAAA
ATGTTACATGACCGTTTCAATTGTCAATTTATCGTTACTGGTTTATTAGGTCCAGGTTCA
AATGCTCAGGTCCAAATGAATTCTTAGATATTCCATTTGCCAAGAAATTATTAAGTTGTG
TTATTATTTATTAGAGCTCATTCCAAGTTNATTAA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
LNKMSLNIEKVKEFSNKAWDENILPTLSKYIEIPNQSPLYDAEWATNGYT---

---GEVDKRLHVEIPQHRLDQIAKCAEILGETIYDEFSWYKNTTPVTKDLTQLMINKTWY
PTICITGAEGIPHTSNAGNVMRTHTTVKVSVRLPPSFKAADASTVLKEIFETNPPYGAEV
TFKMDKCASGWDSPQTRPELEKALGEASNLFFGKDHVYMGEGGSIPFMKMLHDRFNCQFI
VTGLLGPGSNAQVQMNS*ifhlprny*vvllfirahskxi
Translated Amino Acid sequence (All Frames) 
Frame A:
ik*nviky*ks*ri***smg*kyftntfkiy*nsksitii*crmgnqwly---

---GEVDKRLHVEIPQHRLDQIAKCAEILGETIYDEFSWYKNTTPVTKDLTQLMINKTWY
PTICITGAEGIPHTSNAGNVMRTHTTVKVSVRLPPSFKAADASTVLKEIFETNPPYGAEV
TFKMDKCASGWDSPQTRPELEKALGEASNLFFGKDHVYMGEGGSIPFMKMLHDRFNCQFI
VTGLLGPGSNAQVQMNS*ifhlprny*vvllfirahskxi

Frame B:
LNKMSLNIEKVKEFSNKAWDENILPTLSKYIEIPNQSPLYDAEWATNGYT---

---vksikdytlkfhniv*iksqnvlkf*akpsmmnshgtkiplqslki*pn**stklgi
qlfaspvlkvfhtlqmlvms*eltpplklvfvyhhhskqlmhqly*kkfsklirhmvlkl
pskwinvlqvgihhkldqn*kkh*eklqifslakttytwvkvvpshs*kcymtvsivnls
llvy*vqvqmlrsk*ilrysicqeiiklcyyllelipsxl

Frame C:
*ikch*ilkklknlvikhgmkifyqhfqnilkfqinhhymmqngqpmviq---

---*sr*kitr*nsttsfrsnrkmc*nfrrnhl**ilmvqkyhssh*rfnpiddqqnlvs
nylhhrc*rysthfkcw*chenshhr*s*csfttiiqss*cincikrnfrn*saiwc*sy
lqng*mcfrlgfttn*trirksirrsfksflwqrprihg*rwfhpihenvt*pfqlsiyr
ywfirsrfkcsgpnefldipfakkllscviiy*ssfqvx*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFB560 (AFB560Q) /CSM/AF/AFB5-C/AFB560Q.Seq.d/                       1550   0.0
SFL182 (SFL182Q) /CSM/SF/SFL1-D/SFL182Q.Seq.d/                       1265   0.0
SFG389 (SFG389Q) /CSM/SF/SFG3-D/SFG389Q.Seq.d/                       1247   0.0
CFG835 (CFG835Q) /CSM/CF/CFG8-B/CFG835Q.Seq.d/                       1243   0.0
AFB648 (AFB648Q) /CSM/AF/AFB6-B/AFB648Q.Seq.d/                       1243   0.0
VFI168 (VFI168Q) /CSM/VF/VFI1-C/VFI168Q.Seq.d/                       1239   0.0
SFI811 (SFI811Q) /CSM/SF/SFI8-A/SFI811Q.Seq.d/                       1239   0.0
SFI553 (SFI553Q) /CSM/SF/SFI5-C/SFI553Q.Seq.d/                       1239   0.0
SFF785 (SFF785Q) /CSM/SF/SFF7-D/SFF785Q.Seq.d/                       1239   0.0
CFJ404 (CFJ404Q) /CSM/CF/CFJ4-A/CFJ404Q.Seq.d/                       1239   0.0
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BI435853|BI435853.1 EST538614 P. infestans-challenged potato leaf, compatible reaction Solanum tuberosum cDNA clone PPCCL22 5' sequence, mRNA sequence.    48  0.17  1
BG591390|BG591390.1 EST499232 P. infestans-challenged leaf Solanum tuberosum cDNA clone BPLI8D17 5' sequence, mRNA sequence.    48  0.17  1
BQ112173|BQ112173.1 EST597749 mixed potato tissues Solanum tuberosum cDNA clone STMCF59 3' end, mRNA sequence.    48  0.17  1
BI435340|BI435340.1 EST538101 P. infestans-challenged leaf Solanum tuberosum cDNA clone PPCCD08 5' sequence, mRNA sequence.    48  0.17  1
BX125693|BX125693.1 Danio rerio genomic clone DKEY-71E15, genomic survey sequence.    48  0.17  1
BI433279|BI433279.1 EST536040 P. infestans-challenged leaf Solanum tuberosum cDNA clone PPCBC62 5' sequence, mRNA sequence.    48  0.17  1
BQ046631|BQ046631.1 EST595749 P. infestans-challenged potato leaf, incompatible reaction Solanum tuberosum cDNA clone BPLI15C18 5' end, mRNA sequence.    48  0.17  1
BI435717|BI435717.1 EST538478 P. infestans-challenged leaf Solanum tuberosum cDNA clone PPCCI86 5' sequence, mRNA sequence.    48  0.17  1
AC125402|AC125402.3 Mus musculus chromosome 5 clone RP24-539G2, complete sequence.    34  0.64  5
AC102122|AC102122.3 Mus musculus clone RP23-182N5, WORKING DRAFT SEQUENCE, 10 unordered pieces.    46  0.67  1
dna update 2003. 7.23
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM743169_1072(AM743169|pid:none) Stenotrophomonas maltophilia K2...   177   4e-46
AE008923_2905(AE008923|pid:none) Xanthomonas axonopodis pv. citr...   178   8e-46
AM039952_3097(AM039952|pid:none) Xanthomonas campestris pv. vesi...   178   8e-46
CP001111_978(CP001111|pid:none) Stenotrophomonas maltophilia R55...   175   1e-45
AM746676_157(AM746676|pid:none) Sorangium cellulosum 'So ce 56' ...   180   1e-45
CP000113_526(CP000113|pid:none) Myxococcus xanthus DK 1622, comp...   176   1e-45
AE016828_97(AE016828|pid:none) Coxiella burnetii RSA 493, comple...   160   4e-41
CP001020_1727(CP001020|pid:none) Coxiella burnetii CbuK_Q154, co...   160   4e-41
CP000733_1810(CP000733|pid:none) Coxiella burnetii Dugway 5J108-...   160   4e-41
BX571966_664(BX571966|pid:none) Burkholderia pseudomallei strain...   160   7e-41
protein update 2009. 3.27
PSORT 

 psg: 0.53  gvh: 0.28  alm: 0.48  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 28.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for AFB560 is nuc
5' end seq. ID AFB560F
5' end seq. 
>AFB560F.Seq
ATTAAATAAAATGTCATTAAATATTGAAAAAGTTAAAGAATTTAGTAATAAAGCATGGGA
TGAAAATATTTTACCAACACTTTCAAAATATATTGAAATTCCAAATCAATCACCATTATA
TGATGCAGAATGGGCAACCAATGGTTATACAG----------
Length of 5' end seq. 152
3' end seq. ID AFB560Z
3' end seq. 
>AFB560Z.Seq
----------GGTGAAGTCGATAAAAGATTACACGTTGAAATTCCACAACATCGTTTAGA
TCAAATCGCAAAATGTGCTGAAATTTTAGGCGAAACCATCTATGATGAATTCTCATGGTA
CAAAAATACCACTCCAGTCACTAAAGATTTAACCCAATTGATGATCAACAAAACTTGGTA
TCCAACTATTTGCATCACCGGTGCTGAAGGTATTCCACACACTTCAAATGCTGGTAATGT
CATGAGAACTCACACCACCGTTAAAGTTAGTGTTCGTTTACCACCATCATTCAAAGCAGC
TGATGCATCAACTGTATTAAAAGAAATTTTCGAAACTAATCCGCCATATGGTGCTGAAGT
TACCTTCAAAATGGATAAATGTGCTTCAGGTTGGGATTCACCACAAACTAGACCAGAATT
AGAAAAAGCATTAGGAGAAGCTTCAAATCTTTTCTTTGGCAAAGACCACGTATACATGGG
TGAAGGTGGTTCCATCCCATTCATGAAAATGTTACATGACCGTTTCAATTGTCAATTTAT
CGTTACTGGTTTATTAGGTCCAGGTTCAAATGCTCAGGTCCAAATGAATTCTTAGATATT
CCATTTGCCAAGAAATTATTAAGTTGTGTTATTATTTATTAGAGCTCATTCCAAGTTNAT
TAA
Length of 3' end seq. 653
Connected seq. ID AFB560P
Connected seq. 
>AFB560P.Seq
ATTAAATAAAATGTCATTAAATATTGAAAAAGTTAAAGAATTTAGTAATAAAGCATGGGA
TGAAAATATTTTACCAACACTTTCAAAATATATTGAAATTCCAAATCAATCACCATTATA
TGATGCAGAATGGGCAACCAATGGTTATACAG----------GGTGAAGTCGATAAAAGA
TTACACGTTGAAATTCCACAACATCGTTTAGATCAAATCGCAAAATGTGCTGAAATTTTA
GGCGAAACCATCTATGATGAATTCTCATGGTACAAAAATACCACTCCAGTCACTAAAGAT
TTAACCCAATTGATGATCAACAAAACTTGGTATCCAACTATTTGCATCACCGGTGCTGAA
GGTATTCCACACACTTCAAATGCTGGTAATGTCATGAGAACTCACACCACCGTTAAAGTT
AGTGTTCGTTTACCACCATCATTCAAAGCAGCTGATGCATCAACTGTATTAAAAGAAATT
TTCGAAACTAATCCGCCATATGGTGCTGAAGTTACCTTCAAAATGGATAAATGTGCTTCA
GGTTGGGATTCACCACAAACTAGACCAGAATTAGAAAAAGCATTAGGAGAAGCTTCAAAT
CTTTTCTTTGGCAAAGACCACGTATACATGGGTGAAGGTGGTTCCATCCCATTCATGAAA
ATGTTACATGACCGTTTCAATTGTCAATTTATCGTTACTGGTTTATTAGGTCCAGGTTCA
AATGCTCAGGTCCAAATGAATTCTTAGATATTCCATTTGCCAAGAAATTATTAAGTTGTG
TTATTATTTATTAGAGCTCATTCCAAGTTNATTAA
Length of connected seq. 805
Full length Seq ID -
Full length Seq. -
Length of full length seq. -