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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFN619
Library VF
(Link to library)
Clone ID VFN619
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13513-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>VFN619 (VFN619Q) /CSM/VF/VFN6-A/VFN619Q.Seq.d/
GGAGATGCGCGAATTTGTTACGTTGTTGAGCTCATACTAACTTTAAATTAATTTAGTTTT
GAGTCTTTAACAGTATCACTNTGGGAAGAAATGCATAAAGGTCATATAGGAAGAGATGCA
ACCTATGGGAACTACAAGACTAAATATTATAATATGGGATNGNATTCTTTTGTATCTGAT
GCAGTAGATACGTGTGACATTTGCCAACGAAATAGAATAAAAGGTNTAACAAAGGATTTT
GCTCCAATTGTANATACCGAGGAATACTCAAGATTGGTTTATGATNTAACATCAATTAAA
GGNGAACATAAAGAAAAAGTTNCXXXXXXXXXX
sequence update 2001.11.22
Translated Amino Acid sequence 
gdaricyvveliltln*FSFESLTVSLWEEMHKGHIGRDATYGNYKTKYYNMGXXSFVSD
AVDTCDICQRNRIKGXTKDFAPIVXTEEYSRLVYDXTSIKGEHKEKV---
Translated Amino Acid sequence (All Frames) 
Frame A:
gdaricyvveliltln*FSFESLTVSLWEEMHKGHIGRDATYGNYKTKYYNMGXXSFVSD
AVDTCDICQRNRIKGXTKDFAPIVXTEEYSRLVYDXTSIKGEHKEKV---


Frame B:
emrefvtllssy*l*inlvlsl*qyhxgkkcikvi*eemqpmgttrlniiiwdxillylm
q*irvtfaneie*kv*qrillqlxiprntqdwfmx*hqlkxnikkkx---


Frame C:
rcanllrc*ahtnfkli*f*vfnsitxgrna*rsyrkrcnlwelqd*il*ygxxffci*c
sryv*hlptk*nkrxnkgfcsncxyrgilkigl*xnin*rxt*rks---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFN619 (VFN619Q) /CSM/VF/VFN6-A/VFN619Q.Seq.d/                        595   e-169
VHC812 (VHC812Q) /CSM/VH/VHC8-A/VHC812Q.Seq.d/                        587   e-167
VHA484 (VHA484Q) /CSM/VH/VHA4-D/VHA484Q.Seq.d/                        587   e-167
VHA123 (VHA123Q) /CSM/VH/VHA1-A/VHA123Q.Seq.d/                        587   e-167
SHI355 (SHI355Q) /CSM/SH/SHI3-C/SHI355Q.Seq.d/                        587   e-167
SFE560 (SFE560Q) /CSM/SF/SFE5-C/SFE560Q.Seq.d/                        587   e-167
SFE462 (SFE462Q) /CSM/SF/SFE4-C/SFE462Q.Seq.d/                        587   e-167
CHN763 (CHN763Q) /CSM/CH/CHN7-C/CHN763Q.Seq.d/                        587   e-167
CHF724 (CHF724Q) /CSM/CH/CHF7-A/CHF724Q.Seq.d/                        587   e-167
CHE831 (CHE831Q) /CSM/CH/CHE8-B/CHE831Q.Seq.d/                        587   e-167
own update 2002.12.19
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ417571) Dictyostelium discoideum cDNA clone:ddv28e06, 5' ...   595   e-166  1
(BJ419431) Dictyostelium discoideum cDNA clone:ddv36h04, 5' ...   587   e-163  1
(BJ418157) Dictyostelium discoideum cDNA clone:ddv31h22, 5' ...   587   e-163  1
(BJ417958) Dictyostelium discoideum cDNA clone:ddv31m05, 5' ...   587   e-163  1
(BJ395921) Dictyostelium discoideum cDNA clone:dds40n13, 5' ...   587   e-163  1
(BJ388461) Dictyostelium discoideum cDNA clone:dds9l16, 5' e...   587   e-163  1
(BJ386768) Dictyostelium discoideum cDNA clone:dds10g15, 5' ...   587   e-163  1
(BJ369199) Dictyostelium discoideum cDNA clone:ddc49n15, 5' ...   587   e-163  1
(BJ364850) Dictyostelium discoideum cDNA clone:ddc33p05, 5' ...   587   e-163  1
(BJ364357) Dictyostelium discoideum cDNA clone:ddc31n08, 5' ...   587   e-163  1
dna update 2009. 5. 9
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U57081_2(U57081|pid:none) Dictyostelium discoideum Tdd-4 transpo...   165   4e-40
U57081_1(U57081|pid:none) Dictyostelium discoideum Tdd-4 transpo...   165   4e-40
AP008212_1155(AP008212|pid:none) Oryza sativa (japonica cultivar...    38   0.13
AM479657_2(AM479657|pid:none) Vitis vinifera contig VV78X062003....    37   0.22
AC096687_18(AC096687|pid:none) Oryza sativa chromosome 3 BAC OSJ...    37   0.28
M77661_2(M77661|pid:none) Magnaporthe grisea grh retroelement pu...    36   0.37
AJ893357_41(AJ893357|pid:none) Phytophthora infestans, clone PI-...    36   0.48
DQ645742_1(DQ645742|pid:none) Phytophthora sojae transposon Gyps...    35   1.1
EU810765_9(EU810765|pid:none) Sorghum bicolor clone BAC Sbb12448...    34   1.4
EU810765_14(EU810765|pid:none) Sorghum bicolor clone BAC Sbb1244...    33   3.1
protein update 2009. 2.20
PSORT 

 psg: 0.75  gvh: 0.40  alm: 0.51  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 32.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: vacuolar
	  4.0 %: endoplasmic reticulum
	  4.0 %: peroxisomal

>> prediction for VFN619 is nuc
5' end seq. ID VFN619F
5' end seq. 
>VFN619F.Seq
GGAGATGCGCGAATTTGTTACGTTGTTGAGCTCATACTAACTTTAAATTAATTTAGTTTT
GAGTCTTTAACAGTATCACTNTGGGAAGAAATGCATAAAGGTCATATAGGAAGAGATGCA
ACCTATGGGAACTACAAGACTAAATATTATAATATGGGATNGNATTCTTTTGTATCTGAT
GCAGTAGATACGTGTGACATTTGCCAACGAAATAGAATAAAAGGTNTAACAAAGGATTTT
GCTCCAATTGTANATACCGAGGAATACTCAAGATTGGTTTATGATNTAACATCAATTAAA
GGNGAACATAAAGAAAAAGTTNCNNNNNNNNNN
Length of 5' end seq. 333
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -