VFN613
Library VF
(Link to library)
Clone ID VFN613
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U09420-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>VFN613 (VFN613Q) /CSM/VF/VFN6-A/VFN613Q.Seq.d/
ATTTTTTGTTTTTATCACGTTTTGAAAAAATAGACGATTGTCATAAATAACAAATGAACA
ACCAATCACTCCAAAGAGCTGCTATGATATCTGAACACTTAGCTCCAACTTCAGAATTAA
ACATGAACCAAACATCAGCACCAATAAAGACAGCAAAAGAAGAATTAGCAGATTTTGTGG
AGATTTTCCCAATTTTAACCAATGAAATCTTAAAGGAATTACCAGGTATGGACATGCCAC
CACAAACAATTGCATGGGTTGAAAAGATGATCAATGTTAATGTTTCAGGTGGTAAAATGA
ATCGTGGTCTCACCGTACTCCACTCACTTCAATTATTAGTTGAAGGTCGTCAATTATCAC
GTAGCGAAATCTTTTTAGCAAATGTTTTAGGTTGGTGTGTCGAATGGCTTCAAGCATTCT
TTTTAGTTGCTGATGATATTATGGATCAATCGATCACTCGTAGAGGTCAACCATGTTGGT
ATAGACAAGCAAATCCAATCTCAAACAATGGTACCATTGGTTCAATTGCAATTAATGATT
CTTTCATCTTGGAATCTTGCATCTATATCCTCATTAAAAAATACTTTAGAAATGAACCAT
ACTATGCTGATATCTTAGATATTTTCCATGAAACATCTTATCAAACTGAATTAGGXXXXX
XXXXX
sequence update 2001.11.22
Translated Amino Acid sequence
flflsrfekiddchk*QMNNQSLQRAAMISEHLAPTSELNMNQTSAPIKTAKEELADFVE
IFPILTNEILKELPGMDMPPQTIAWVEKMINVNVSGGKMNRGLTVLHSLQLLVEGRQLSR
SEIFLANVLGWCVEWLQAFFLVADDIMDQSITRRGQPCWYRQANPISNNGTIGSIAINDS
FILESCIYILIKKYFRNEPYYADILDIFHETSYQTEL---


Translated Amino Acid sequence (All Frames)
Frame A:
ifcfyhvlkk*tivinnk*ttnhskell*ylnt*lqlqn*t*tkhqhq*rqqkkn*qilw
rfsqf*pmks*rnyqvwtchhkqlhglkr*smlmfqvvk*ivvspysthfny*lkvvnyh
vaksf*qmf*vgvsngfkhsf*llmilwinrslvevnhvgidkqiqsqtmvplvqlqlmi
lsswnlasisslkntlemnhtmlis*ifsmkhlikln*---


Frame B:
ffvfitf*knrrls*itneqpitpkscydi*tlssnfrikhepnistnkdskrrisrfcg
dfpnfnq*nlkgitryghattnncmg*kddqc*cfrw*neswshrtpltsiis*rssiit
*rnlfskcfrlvcrmassilfsc**yygsidhs*rstmlv*tsksnlkqwyhwfncn**f
fhlgilhlyph*kil*k*tilc*ylryfp*nilsn*i---


Frame C:
flflsrfekiddchk*QMNNQSLQRAAMISEHLAPTSELNMNQTSAPIKTAKEELADFVE
IFPILTNEILKELPGMDMPPQTIAWVEKMINVNVSGGKMNRGLTVLHSLQLLVEGRQLSR
SEIFLANVLGWCVEWLQAFFLVADDIMDQSITRRGQPCWYRQANPISNNGTIGSIAINDS
FILESCIYILIKKYFRNEPYYADILDIFHETSYQTEL---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFN613 (VFN613Q) /CSM/VF/VFN6-A/VFN613Q.Seq.d/ 1273 0.0
VFI312 (VFI312Q) /CSM/VF/VFI3-A/VFI312Q.Seq.d/ 1237 0.0
VFL358 (VFL358Q) /CSM/VF/VFL3-C/VFL358Q.Seq.d/ 1215 0.0
VFL169 (VFL169Q) /CSM/VF/VFL1-C/VFL169Q.Seq.d/ 1197 0.0
VFI674 (VFI674Q) /CSM/VF/VFI6-D/VFI674Q.Seq.d/ 1170 0.0
VFI323 (VFI323Q) /CSM/VF/VFI3-A/VFI323Q.Seq.d/ 1166 0.0
VFI452 (VFI452Q) /CSM/VF/VFI4-C/VFI452Q.Seq.d/ 1126 0.0
VFI732 (VFI732Q) /CSM/VF/VFI7-B/VFI732Q.Seq.d/ 1096 0.0
VFK663 (VFK663Q) /CSM/VF/VFK6-C/VFK663Q.Seq.d/ 357 1e-97
VSE761 (VSE761Q) /CSM/VS/VSE7-C/VSE761Q.Seq.d/ 60 5e-08

own update 2001.11.28
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ417591) Dictyostelium discoideum cDNA clone:ddv28i04, 5' ... 1269 0.0 1
(BJ413825) Dictyostelium discoideum cDNA clone:ddv17h03, 5' ... 1233 0.0 1
(BJ415727) Dictyostelium discoideum cDNA clone:ddv23d15, 5' ... 1211 0.0 1
(BJ415753) Dictyostelium discoideum cDNA clone:ddv23i17, 5' ... 1197 0.0 1
(AF234168) Dictyostelium discoideum farnesyl diphosphate syn... 1189 0.0 1
(BJ413855) Dictyostelium discoideum cDNA clone:ddv17n05, 5' ... 1166 0.0 1
(BJ414321) Dictyostelium discoideum cDNA clone:ddv18c20, 5' ... 1150 0.0 1
(BJ413972) Dictyostelium discoideum cDNA clone:ddv17h14, 5' ... 1126 0.0 1
(BJ414226) Dictyostelium discoideum cDNA clone:ddv18p07, 5' ... 1096 0.0 1
(BJ415468) Dictyostelium discoideum cDNA clone:ddv22m16, 5' ... 325 4e-95 2
dna update 2009. 5. 9
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P49349) RecName: Full=Farnesyl pyrophosphate synthetase; ... 182 1e-44
EU399544_1(EU399544|pid:none) Ganoderma lucidum farnesyl-diphosp... 178 1e-43
AY083165_1(AY083165|pid:none) Malus x domestica farnesyl pyropho... 177 2e-43
AB017371_1(AB017371|pid:none) Gentiana lutea mRNA for Farnesyl p... 174 2e-42
DQ087959_1(DQ087959|pid:none) Panax ginseng farnesyl diphosphate... 174 2e-42
AB052681_1(AB052681|pid:none) Eucommia ulmoides EUFPS2 mRNA for ... 173 5e-42
AP007162_302(AP007162|pid:none) Aspergillus oryzae RIB40 genomic... 172 1e-41
AB176846_1(AB176846|pid:none) Lactarius chrysorrheus LcFPS mRNA ... 171 1e-41
CU640366_1133(CU640366|pid:none) Podospora anserina genomic DNA ... 171 2e-41
EF593108_1(EF593108|pid:none) Hevea brasiliensis farnesyl diphos... 171 2e-41
protein update 2009. 6.25
PSORT

psg: 0.77 gvh: 0.29 alm: 0.34 top: 0.53 tms: 0.00 mit: 0.29 mip: 0.03
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
32.0 %: nuclear
16.0 %: mitochondrial
8.0 %: plasma membrane
4.0 %: cytoskeletal

>> prediction for VFN613 is cyt

5' end seq. ID VFN613F
5' end seq.
>VFN613F.Seq
ATTTTTTGTTTTTATCACGTTTTGAAAAAATAGACGATTGTCATAAATAACAAATGAACA
ACCAATCACTCCAAAGAGCTGCTATGATATCTGAACACTTAGCTCCAACTTCAGAATTAA
ACATGAACCAAACATCAGCACCAATAAAGACAGCAAAAGAAGAATTAGCAGATTTTGTGG
AGATTTTCCCAATTTTAACCAATGAAATCTTAAAGGAATTACCAGGTATGGACATGCCAC
CACAAACAATTGCATGGGTTGAAAAGATGATCAATGTTAATGTTTCAGGTGGTAAAATGA
ATCGTGGTCTCACCGTACTCCACTCACTTCAATTATTAGTTGAAGGTCGTCAATTATCAC
GTAGCGAAATCTTTTTAGCAAATGTTTTAGGTTGGTGTGTCGAATGGCTTCAAGCATTCT
TTTTAGTTGCTGATGATATTATGGATCAATCGATCACTCGTAGAGGTCAACCATGTTGGT
ATAGACAAGCAAATCCAATCTCAAACAATGGTACCATTGGTTCAATTGCAATTAATGATT
CTTTCATCTTGGAATCTTGCATCTATATCCTCATTAAAAAATACTTTAGAAATGAACCAT
ACTATGCTGATATCTTAGATATTTTCCATGAAACATCTTATCAAACTGAATTAGGNNNNN
NNNNN
Length of 5' end seq. 665
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -