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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFN254
Library AF
(Link to library)
Clone ID AFN254
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID AFN254P
(Link to Original site)
Representative DNA sequence 
>AFN254 (AFN254Q) /CSM/AF/AFN2-C/AFN254Q.Seq.d/
GGCAAAGGAAAATAAAAAAAATATTTTATATTTTCATAAAAAATAAAAAAAACAAAACAA
AATAAAATAAAACAAAACAAAATAAAACAAAACAATTACTTTACTAAATGTAAATAAAAA
ATATTTTATTTTTATTAATCCATAATAAAATTAAAAATATCTTTTTTATATTTTTTTATT
TTTTTTTTATATTTAAAAATATAAATACCATATATATACATATCTAAAANGATAAAATCA
ATTTTATCATTACAAAATTTTAAATTTATAAAACCTTGTNCAAATTCATCAATTTTAAAA
TATAATAATAATAATAATACTAATAATAATAATAATAATAANGGTNTAAATAAATATAAT
AGTNCATTTAATAATAATAATTCAAATTTTTCAAATAAAAATTTATTTTCATCAAAACAA
TATCAACANCAATCTATTTGTAATATACCAATTTTATCTACAATTTCATATCATAATAAA
AATAATACAAATATAAATACTATTATTAATAATAATAATAGTAGTAATAATAATTTAATT
AATTTAAANGATAAATTTAATAATTTAAATAATAAAACATCACCAATAATATTTAATAAA
AATTATTCAXXXXXXXXXXCTGATTATAAATTTGATTCAAAAGTTGAACGTACAAAAACT
AGACCAATAGCTTCAAAACAATTAACTCATAAACAAAGTTTAATATTTTTAGGTGGTCAA
TTATTAGCTTCTTTTGGTTTAATTTTATCAAGTTTAAATTATTATACTATTGCATTATGT
GCATCATCATTACCAATTGTGGTATTGTATCCATTTATGAAAAGATTTACATATTATCCA
CAATTTGTATTAGGATTAGCATTTAATTGGGGAGCATTGGCTGGATATTCAGCGATTGCA
GGATCATGTAATTGGTCAATCGTTGCACCATTATATTTGGCAGGTATTAGTTGGACGATG
GTTTATGATACAATCTATGCACATCAAGATAAAAGGGATGATATTTTAGTTGGTGTTAAA
TCTACTGCATTGAAATTTGCAGAAAAGAGTCGTATTATTTTATCAGTTTTCTCTGGTCTA
GTTATATCTGGTATGTTTTTAACTGGTATCGCTGCAAATATGCCATTGTTTTATTATTTG
GGTACTGCTGCTTGTAGTAGTCATTTAATTTGGCAATTGAAAACTGTAGATTTCAATAAT
CCTTCCTCTTGTCTTGAAAAATTCATTTCCAATAAGAATTTCGGTCTTTATTTCCTTTTA
ATCATTATAGTTTCAAAATTATTACAAGATAAAGAAAATAAAANAAATTCAAAAAAAATA
AAACTTTATCT
sequence update 2009. 4. 3
Translated Amino Acid sequence 
gkgk*kkyfifs*kikktkqnkikqnkikqnnyftkck*kifyfy*siiklkisflyffi
fflylki*IPYIYISKXIKSILSLQNFKFIKPCXNSSILKYNNNNNTNNNNNNXGXNKYN
SXFNNNNSNFSNKNLFSSKQYQXQSICNIPILSTISYHNKNNTNINTIINNNNSSNNNLI
NLXDKFNNLNNKTSPIIFNKNYS---

---DYKFDSKVERTKTRPIASKQLTHKQSLIFLGGQLLASFGLILSSLNYYTIALCASSL
PIVVLYPFMKRFTYYPQFVLGLAFNWGALAGYSAIAGSCNWSIVAPLYLAGISWTMVYDT
IYAHQDKRDDILVGVKSTALKFAEKSRIILSVFSGLVISGMFLTGIAANMPLFYYLGTAA
CSSHLIWQLKTVDFNNPSSCLEKFISNKNFGLYFLLIIIVSKLLQDKENKXNSKKIKLY
Translated Amino Acid sequence (All Frames) 
Frame A:
gkgk*kkyfifs*kikktkqnkikqnkikqnnyftkck*kifyfy*siiklkisflyffi
fflylki*IPYIYISKXIKSILSLQNFKFIKPCXNSSILKYNNNNNTNNNNNNXGXNKYN
SXFNNNNSNFSNKNLFSSKQYQXQSICNIPILSTISYHNKNNTNINTIINNNNSSNNNLI
NLXDKFNNLNNKTSPIIFNKNYS---

---liinliqklnvqkldq*lqnn*linkv*yf*vvny*lllv*fyqv*iiillhyvhhh
yqlwycihl*kdlhiihnly*d*hligehwldiqrlqdhvigqslhhyiwqvlvgrwfmi
qsmhikikgmif*lvlnllh*nlqkrvvlfyqfslv*lylvcf*lvslqichcfiiwvll
lvvvi*fgn*kl*isiilplvlknsfpirisvfisf*sl*fqnyykikkikxiqkk*nfi

Frame B:
akenkknilyfhkk*kkqnkik*nktk*nktitllnvnkkyfifinp**n*kylfyiflf
ffyi*kykyhiytylkx*nqfyhykilnl*nlvqihqf*niiiiiiliiiiiixv*inii
vhliiiiqifqikiyfhqnninxnlfviyqfylqfhiiikiiqi*illliiiivviii*l
i*xinlii*iikhhq*ylikii---

---*l*i*fks*tykn*tnsfktins*tkfnifrwsiisffwfnfikfkllyycimciii
tncgivsiyekiyilsticirisi*lgsigwifsdcrim*lvnrctiifgry*lddgl*y
nlctsr*kg*yfswc*iycieicrkesyyfisflwssyiwyvfnwyrckyaivllfgycc
l**sfnlaiencrfq*sflls*kihfq*efrslfpfnhysfkiitr*rk*xkfkknktls

Frame C:
qrkikkifyifiknkknktk*nktkqnktkqlly*m*iknilfllihnkikniffiffyf
ffifknintiyihi*xdkinfiitkf*iyktlxkfinfki*****y*******xxk*i**
xi****fkffk*kfifiktistxiyl*ytnfiynfis**k*ykykyyy*********fn*
fkx*i**fk**nitnni**klf---

---DYKFDSKVERTKTRPIASKQLTHKQSLIFLGGQLLASFGLILSSLNYYTIALCASSL
PIVVLYPFMKRFTYYPQFVLGLAFNWGALAGYSAIAGSCNWSIVAPLYLAGISWTMVYDT
IYAHQDKRDDILVGVKSTALKFAEKSRIILSVFSGLVISGMFLTGIAANMPLFYYLGTAA
CSSHLIWQLKTVDFNNPSSCLEKFISNKNFGLYFLLIIIVSKLLQDKENKXNSKKIKLY
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFO463 (AFO463Q) /CSM/AF/AFO4-C/AFO463Q.Seq.d/                       1330   0.0
AFN254 (AFN254Q) /CSM/AF/AFN2-C/AFN254Q.Seq.d/                       1330   0.0
SSI153 (SSI153Q) /CSM/SS/SSI1-C/SSI153Q.Seq.d/                        523   e-147
VSJ867 (VSJ867Q) /CSM/VS/VSJ8-C/VSJ867Q.Seq.d/                         40   0.085
VHP330 (VHP330Q) /CSM/VH/VHP3-B/VHP330Q.Seq.d/                         40   0.085
VHP318 (VHP318Q) /CSM/VH/VHP3-A/VHP318Q.Seq.d/                         40   0.085
VHN852 (VHN852Q) /CSM/VH/VHN8-C/VHN852Q.Seq.d/                         40   0.085
VHN340 (VHN340Q) /CSM/VH/VHN3-B/VHN340Q.Seq.d/                         40   0.085
VHN131 (VHN131Q) /CSM/VH/VHN1-B/VHN131Q.Seq.d/                         40   0.085
VHL633 (VHL633Q) /CSM/VH/VHL6-B/VHL633Q.Seq.d/                         40   0.085
own update 2009. 4. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ347618) Dictyostelium discoideum cDNA clone:dda27k14, 3' ...  1330   0.0    1
(BJ345976) Dictyostelium discoideum cDNA clone:dda29n16, 3' ...  1330   0.0    1
(C90153) Dictyostelium discoideum slug cDNA, clone SSI153.        523   e-144  1
(DY264372) IC0AAA14BE01RM1 CitNFL Citrus clementina cDNA 5',...    52   9e-11  2
(AB055079) Lithospermum erythrorhizon lepgt-2 mRNA, complete...    56   2e-07  2
(AB055078) Lithospermum erythrorhizon lepgt-1 mRNA, complete...    56   7e-07  2
(DW224449) GH_HYPS_01-01-10R_E03_InvR_14Apr04_023_R Stem - 7...    68   9e-07  1
(CU503833) Theobroma cacao, mRNA sequence (KZ0ACAK5YK22FM1).       68   9e-07  1
(CO074948) GR__Ea35F12.f GR__Ea Gossypium raimondii cDNA clo...    68   9e-07  1
(DY273682) IC0AAA34CE03RM1 CitNFL Citrus clementina cDNA 5',...    46   1e-06  2
dna update 2009. 4.16
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC134043_1(BC134043|pid:none) Danio rerio zgc:162600, mRNA (cDNA...   256   1e-66
BT049480_1(BT049480|pid:none) Salmo salar clone ssal-evf-534-048...   246   1e-63
BC020728_1(BC020728|pid:none) Homo sapiens coenzyme Q2 homolog, ...   231   4e-59
(Q2KIQ4) RecName: Full=Para-hydroxybenzoate--polyprenyltransfera...   231   4e-59
(Q96H96) RecName: Full=Para-hydroxybenzoate--polyprenyltransfera...   231   4e-59
(Q499N4) RecName: Full=Para-hydroxybenzoate--polyprenyltransfera...   225   2e-57
(Q9VHS7) RecName: Full=Para-hydroxybenzoate--polyprenyltransfera...   220   1e-55
(Q298G6) RecName: Full=Para-hydroxybenzoate--polyprenyltransfera...   219   1e-55
AB052553_1(AB052553|pid:none) Arabidopsis thaliana AtPPT1 mRNA f...   209   1e-52
CP000774_653(CP000774|pid:none) Parvibaculum lavamentivorans DS-...   208   4e-52
protein update 2009. 4. 6
PSORT 

 psg: 0.00  gvh: 0.00  alm: 0.00  top: 0.00  tms: 0.00  mit: 0.00  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	100.0 %: 

>> prediction for AFN254 is

5' end seq. ID AFN254F
5' end seq. 
>AFN254F.Seq
GGCAAAGGAAAATAAAAAAAATATTTTATATTTTCATAAAAAATAAAAAAAACAAAACAA
AATAAAATAAAACAAAACAAAATAAAACAAAACAATTACTTTACTAAATGTAAATAAAAA
ATATTTTATTTTTATTAATCCATAATAAAATTAAAAATATCTTTTTTATATTTTTTTATT
TTTTTTTTATATTTAAAAATATAAATACCATATATATACATATCTAAAANGATAAAATCA
ATTTTATCATTACAAAATTTTAAATTTATAAAACCTTGTNCAAATTCATCAATTTTAAAA
TATAATAATAATAATAATACTAATAATAATAATAATAATAANGGTNTAAATAAATATAAT
AGTNCATTTAATAATAATAATTCAAATTTTTCAAATAAAAATTTATTTTCATCAAAACAA
TATCAACANCAATCTATTTGTAATATACCAATTTTATCTACAATTTCATATCATAATAAA
AATAATACAAATATAAATACTATTATTAATAATAATAATAGTAGTAATAATAATTTAATT
AATTTAAANGATAAATTTAATAATTTAAATAATAAAACATCACCAATAATATTTAATAAA
AATTATTCAXXXXXXXXXX
Length of 5' end seq. 619
3' end seq. ID AFN254Z
3' end seq. 
>AFN254Z.Seq
XXXXXXXXXXCTGATTATAAATTTGATTCAAAAGTTGAACGTACAAAAACTAGACCAATA
GCTTCAAAACAATTAACTCATAAACAAAGTTTAATATTTTTAGGTGGTCAATTATTAGCT
TCTTTTGGTTTAATTTTATCAAGTTTAAATTATTATACTATTGCATTATGTGCATCATCA
TTACCAATTGTGGTATTGTATCCATTTATGAAAAGATTTACATATTATCCACAATTTGTA
TTAGGATTAGCATTTAATTGGGGAGCATTGGCTGGATATTCAGCGATTGCAGGATCATGT
AATTGGTCAATCGTTGCACCATTATATTTGGCAGGTATTAGTTGGACGATGGTTTATGAT
ACAATCTATGCACATCAAGATAAAAGGGATGATATTTTAGTTGGTGTTAAATCTACTGCA
TTGAAATTTGCAGAAAAGAGTCGTATTATTTTATCAGTTTTCTCTGGTCTAGTTATATCT
GGTATGTTTTTAACTGGTATCGCTGCAAATATGCCATTGTTTTATTATTTGGGTACTGCT
GCTTGTAGTAGTCATTTAATTTGGCAATTGAAAACTGTAGATTTCAATAATCCTTCCTCT
TGTCTTGAAAAATTCATTTCCAATAAGAATTTCGGTCTTTATTTCCTTTTAATCATTATA
GTTTCAAAATTATTACAAGATAAAGAAAATAAAANAAATTCAAAAAAAATAAAACTTTAT
CT
Length of 3' end seq. 722
Connected seq. ID AFN254P
Connected seq. 
>AFN254P.Seq
GGCAAAGGAAAATAAAAAAAATATTTTATATTTTCATAAAAAATAAAAAAAACAAAACAA
AATAAAATAAAACAAAACAAAATAAAACAAAACAATTACTTTACTAAATGTAAATAAAAA
ATATTTTATTTTTATTAATCCATAATAAAATTAAAAATATCTTTTTTATATTTTTTTATT
TTTTTTTTATATTTAAAAATATAAATACCATATATATACATATCTAAAANGATAAAATCA
ATTTTATCATTACAAAATTTTAAATTTATAAAACCTTGTNCAAATTCATCAATTTTAAAA
TATAATAATAATAATAATACTAATAATAATAATAATAATAANGGTNTAAATAAATATAAT
AGTNCATTTAATAATAATAATTCAAATTTTTCAAATAAAAATTTATTTTCATCAAAACAA
TATCAACANCAATCTATTTGTAATATACCAATTTTATCTACAATTTCATATCATAATAAA
AATAATACAAATATAAATACTATTATTAATAATAATAATAGTAGTAATAATAATTTAATT
AATTTAAANGATAAATTTAATAATTTAAATAATAAAACATCACCAATAATATTTAATAAA
AATTATTCA----------CTGATTATAAATTTGATTCAAAAGTTGAACGTACAAAAACT
AGACCAATAGCTTCAAAACAATTAACTCATAAACAAAGTTTAATATTTTTAGGTGGTCAA
TTATTAGCTTCTTTTGGTTTAATTTTATCAAGTTTAAATTATTATACTATTGCATTATGT
GCATCATCATTACCAATTGTGGTATTGTATCCATTTATGAAAAGATTTACATATTATCCA
CAATTTGTATTAGGATTAGCATTTAATTGGGGAGCATTGGCTGGATATTCAGCGATTGCA
GGATCATGTAATTGGTCAATCGTTGCACCATTATATTTGGCAGGTATTAGTTGGACGATG
GTTTATGATACAATCTATGCACATCAAGATAAAAGGGATGATATTTTAGTTGGTGTTAAA
TCTACTGCATTGAAATTTGCAGAAAAGAGTCGTATTATTTTATCAGTTTTCTCTGGTCTA
GTTATATCTGGTATGTTTTTAACTGGTATCGCTGCAAATATGCCATTGTTTTATTATTTG
GGTACTGCTGCTTGTAGTAGTCATTTAATTTGGCAATTGAAAACTGTAGATTTCAATAAT
CCTTCCTCTTGTCTTGAAAAATTCATTTCCAATAAGAATTTCGGTCTTTATTTCCTTTTA
ATCATTATAGTTTCAAAATTATTACAAGATAAAGAAAATAAAANAAATTCAAAAAAAATA
AAACTTTATCT
Length of connected seq. 1321
Full length Seq ID -
Full length Seq. -
Length of full length seq. -