VFN240
Library VF
(Link to library)
Clone ID VFN240
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16467-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>VFN240 (VFN240Q) /CSM/VF/VFN2-B/VFN240Q.Seq.d/
XXXXXXXXXXGTGAGCCATGCGCCATGTGCTCAGCTGCTCTTTTGTGGGCTGACTTCAAA
ACCATTGTCTGGGGTACCTTCAACAGTGATTTACTTTGCAAAATCTGTATGTCAAACATC
CCAATGGATTCCTCATACATCTTTGGTCGTTACTATGGTTTAAGAGCTAGCCCACCAAGA
GTTATCGGTGGTGTCTTACGTACTGAAGCTGACGCCTGGTTCGGTTCATACTGTAGCAGA
CCAACTTCAATCTATTACATTAAACCACAATGTGTCTGTACCAACACTACTTCACCATTA
AAGATTGATCAAACTCGTTACTCCTCATGGTTTGAAAACGGTAAAACTGTCTCTCAATTC
GGTGGTACAATTACCAACACTGGTTCAGTCACTGTTACCAACCCAACTTTCACCTCTTCT
CCAAATCGTCCAAACTCAATCTGGGGTCTCTCAGTCAATGAAGCCACTAACCTCTGGTCA
CTCCAATGGTACCCAGTCATCCAACCAGGTCAATCCTTCTCTTTCGGTTACATCATCGAT
GGTGAAGATACCATTGCTTTCCAACCAACTGCTTAAGCAATTAATTCATTTCCTCATATG
AATTTGTACCAATAATATTAACAACCATCCCCCCCTTACTGCGGTTATTATTTGGATGCT
CTATTTTTTTCTTTTTTTAAAAAACCTCTTCAAATAAATAA
sequence update 2001.11.22
Translated Amino Acid sequence
---EPCAMCSAALLWADFKTIVWGTFNSDLLCKICMSNIPMDSSYIFGRYYGLRASPPRV
IGGVLRTEADAWFGSYCSRPTSIYYIKPQCVCTNTTSPLKIDQTRYSSWFENGKTVSQFG
GTITNTGSVTVTNPTFTSSPNRPNSIWGLSVNEATNLWSLQWYPVIQPGQSFSFGYIIDG
EDTIAFQPTA*ainsfphmnlyq*y*qpsppycgyyldalffsffkkplqin


Translated Amino Acid sequence (All Frames)
Frame A:
---*amrhvlscsfvg*lqnhclgylqq*ftlqnlyvkhpngflihlwsllwfks*ptks
yrwclty*s*rlvrfil*qtnfnllh*ttmclyqhyftikd*snslllmv*kr*nclsir
wynyqhwfshcyqpnfhlfskssklnlgslsq*sh*plvtpmvpshptrsillfrlhhrw
*ryhcfptnclsn*fissyefvpiilttippllrllfgcsiffff*ktssnk*


Frame B:
---EPCAMCSAALLWADFKTIVWGTFNSDLLCKICMSNIPMDSSYIFGRYYGLRASPPRV
IGGVLRTEADAWFGSYCSRPTSIYYIKPQCVCTNTTSPLKIDQTRYSSWFENGKTVSQFG
GTITNTGSVTVTNPTFTSSPNRPNSIWGLSVNEATNLWSLQWYPVIQPGQSFSFGYIIDG
EDTIAFQPTA*ainsfphmnlyq*y*qpsppycgyyldalffsffkkplqin


Frame C:
---shapcaqllfcgltskplsgvpstviyfaksvcqtsqwiphtslvvtmv*elahqel
svvsyvlkltpgsvhtvadqlqsitlnhnvsvptllhh*rliklvtphglktvklslnsv
vqlptlvqsllptqlspllqivqtqsgvsqsmkpltsghsngtqssnqvnpslsvtssmv
kipllsnqllkqlihfli*ictnninnhppltaviiwmlyfflflknlfk*i


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFN240 (VFN240Q) /CSM/VF/VFN2-B/VFN240Q.Seq.d/ 1253 0.0
FCL-AA24 (FCL-AA24Q) /CSM/FCL/FCL-AA/FCL-AA24Q.Seq.d/ 1239 0.0
VFL528 (VFL528Q) /CSM/VF/VFL5-B/VFL528Q.Seq.d/ 1233 0.0
SSE733 (SSE733Q) /CSM/SS/SSE7-B/SSE733Q.Seq.d/ 1199 0.0
VFL767 (VFL767Q) /CSM/VF/VFL7-C/VFL767Q.Seq.d/ 1172 0.0
SFC348 (SFC348Q) /CSM/SF/SFC3-B/SFC348Q.Seq.d/ 1160 0.0
VFJ667 (VFJ667Q) /CSM/VF/VFJ6-C/VFJ667Q.Seq.d/ 1154 0.0
SFC842 (SFC842Q) /CSM/SF/SFC8-B/SFC842Q.Seq.d/ 1154 0.0
SFG535 (SFG535Q) /CSM/SF/SFG5-B/SFG535Q.Seq.d/ 1138 0.0
SFJ672 (SFJ672Q) /CSM/SF/SFJ6-C/SFJ672Q.Seq.d/ 1128 0.0

own update 2004.12.24
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(C22768) Dictyostelium discoideum gamete cDNA, clone FCL-AA24. 1239 0.0 2
(BJ435540) Dictyostelium discoideum cDNA clone:ddv27o10, 3' ... 1223 0.0 3
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173... 1213 0.0 3
(BJ434581) Dictyostelium discoideum cDNA clone:ddv24g07, 3' ... 1207 0.0 3
(BJ433026) Dictyostelium discoideum cDNA clone:ddv20e18, 3' ... 1154 0.0 1
(BJ434654) Dictyostelium discoideum cDNA clone:ddv24f17, 3' ... 1146 0.0 3
(BJ399507) Dictyostelium discoideum cDNA clone:dds6d12, 3' e... 1146 0.0 3
(BJ399327) Dictyostelium discoideum cDNA clone:dds5p11, 3' e... 1146 0.0 3
(BJ400679) Dictyostelium discoideum cDNA clone:dds14e09, 3' ... 1138 0.0 2
(BJ402169) Dictyostelium discoideum cDNA clone:dds20o18, 3' ... 1128 0.0 2
dna update 2009. 5. 1
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC116977_84(AC116977|pid:none) Dictyostelium discoideum chromoso... 398 e-110
AC116032_1(AC116032|pid:none) Dictyostelium discoideum chromosom... 72 2e-11
CU633453_11(CU633453|pid:none) Podospora anserina genomic DNA ch... 44 0.004
T18270(T18270) hypothetical protein - slime mold (Dictyostelium ... 44 0.006
CU633897_23(CU633897|pid:none) Podospora anserina genomic DNA ch... 43 0.008
AY710429_3(AY710429|pid:none) Cryptococcus gattii strain E566 MA... 42 0.018
AY710430_3(AY710430|pid:none) Cryptococcus gattii strain WM276 M... 42 0.024
AF538680_1(AF538680|pid:none) Gossypium hirsutum endo-1,4-beta-g... 41 0.040
EF591889_14(EF591889|pid:none) Uncultured planctomycete 13FN clo... 40 0.053
AF054615_1(AF054615|pid:none) Fragaria x ananassa cellulase (Cel... 40 0.069
protein update 2009. 6.24
PSORT

psg: 0.75 gvh: 0.48 alm: 0.39 top: 0.53 tms: 0.00 mit: 0.12 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: cytoplasmic
28.0 %: nuclear
8.0 %: vesicles of secretory system
4.0 %: mitochondrial
4.0 %: vacuolar
4.0 %: Golgi

>> prediction for VFN240 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VFN240Z
3' end seq.
>VFN240Z.Seq
NNNNNNNNNNGTGAGCCATGCGCCATGTGCTCAGCTGCTCTTTTGTGGGCTGACTTCAAA
ACCATTGTCTGGGGTACCTTCAACAGTGATTTACTTTGCAAAATCTGTATGTCAAACATC
CCAATGGATTCCTCATACATCTTTGGTCGTTACTATGGTTTAAGAGCTAGCCCACCAAGA
GTTATCGGTGGTGTCTTACGTACTGAAGCTGACGCCTGGTTCGGTTCATACTGTAGCAGA
CCAACTTCAATCTATTACATTAAACCACAATGTGTCTGTACCAACACTACTTCACCATTA
AAGATTGATCAAACTCGTTACTCCTCATGGTTTGAAAACGGTAAAACTGTCTCTCAATTC
GGTGGTACAATTACCAACACTGGTTCAGTCACTGTTACCAACCCAACTTTCACCTCTTCT
CCAAATCGTCCAAACTCAATCTGGGGTCTCTCAGTCAATGAAGCCACTAACCTCTGGTCA
CTCCAATGGTACCCAGTCATCCAACCAGGTCAATCCTTCTCTTTCGGTTACATCATCGAT
GGTGAAGATACCATTGCTTTCCAACCAACTGCTTAAGCAATTAATTCATTTCCTCATATG
AATTTGTACCAATAATATTAACAACCATCCCCCCCTTACTGCGGTTATTATTTGGATGCT
CTATTTTTTTCTTTTTTTAAAAAACCTCTTCAAATAAATAA
Length of 3' end seq. 701
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -