AFN233
Library AF
(Link to library)
Clone ID AFN233
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig -
Original site URL
Representative seq. ID AFN233P
(Link to Original site)
Representative DNA sequence
>AFN233 (AFN233Q) /CSM/AF/AFN2-B/AFN233Q.Seq.d/
ACCCCAAAATACTAATAATATCAAAGATGAATGGTGCAGATATTTCATTAATCGTTTTAG
CAGGTTTTGTTGGATTTATTGTGTTAATAATTATATTGAATCTTTTTTCAAAGATCTTTA
TAGTTGAAAAAGGCACATGTGTCATTGTAGAAAGATTTGGTAAATTTCACAAGAAATGTG
ATGCAGGTATTCATGTATTAGTACCATTCATTGATGAAATTAAACCATTACTTTGGAGAT
ATACAACAACTTATTATGATTCAAATATTTATACAACAGGTAAACAAAATTATAAAGTAA
CTCAAAAATTAATGTATAAAATTGATACAAGAGAGTCATTAATGGATTTTCCTTTACAAT
CAATTATTACACGTGATAATGTAAAGATTAAAGTACATCCAATGTTACTATATCGTATTG
TTGATCCGATTAGAGCAGTTTATGAAGTTTATGATTTAGCATTATGTGTAGAGAAATTGG
TTCAAACATCACTAAGATCAATCATTGGTGATATGGGTTTAGATGATACTTTAGCCTCAA
GAGAGGAAATTAATAAAACATTAATGTTAAAGATTAGTAGTATCTTTTTAAATTTTGGTC
TTAAATTAGAAAAAGTTGAAATTXXXXXXXXXXTATAAAGTAACTCAAAAATTAATGTAT
AAAATTGATACAAGAGAGTCATTAATGGATTTTCCTTTACAATCAATTATTACACGTGAT
AATGTAAAGATTAAAGTACATCCAATGTTACTATATCGTATTGTTGATCCGATTAGAGCA
GTTTATGAAGTTTATGATTTAGCATTATGTGTAGAGAAATTGGTTCAAACATCACTAAGA
TCAATCATTGGTGATATGGGTTTAGATGATACTTTAGCCTCAAGAGAGGAAATTAATAAA
ACATTAATGTTAAAGATTAGTAGTATCTTTTTAAATTTTGGTCTTAAATTAGAAAAAGTT
GAAATTTTAGAAATTTTACCTTCACAATCAATTCAAGATGCATTACATTTACAAATTTCA
TCAGAACGTGTACGTAGAGCAAATGTAATTTCAGCAGAAGGTTTTAGAGAACAAACTAAA
ACAGAAGCAGAAGGTGATTGTCAAGCTCAAATTTCATTATCAAGAGGAAGACAACAAGTT
TTAATTATATCTGCAAGAGCAGAGGCTGAATCAAAGATTATTGAAGCACAAGCTGAAGCT
GATTCAATTAAAATCATTGGTGATGCTTTAAAAGAATTTAACATTGAACCAACTCAATAT
ATAATTGGTACTAAATATATAACTACTTTAATTTCTATGGCTAAAAAATCAAAATCTGTT
AATATGGTTTACCTTATTCTTCTCAAATTTTAGGGTTCTGTTAAAAAA
sequence update 2009. 4. 3
Translated Amino Acid sequence
PKILIISKMNGADISLIVLAGFVGFIVLIIILNLFSKIFIVEKGTCVIVERFGKFHKKCD
AGIHVLVPFIDEIKPLLWRYTTTYYDSNIYTTGKQNYKVTQKLMYKIDTRESLMDFPLQS
IITRDNVKIKVHPMLLYRIVDPIRAVYEVYDLALCVEKLVQTSLRSIIGDMGLDDTLASR
EEINKTLMLKISSIFLNFGLKLEKVEI---

---YKVTQKLMYKIDTRESLMDFPLQSIITRDNVKIKVHPMLLYRIVDPIRAVYEVYDLA
LCVEKLVQTSLRSIIGDMGLDDTLASREEINKTLMLKISSIFLNFGLKLEKVEILEILPS
QSIQDALHLQISSERVRRANVISAEGFREQTKTEAEGDCQAQISLSRGRQQVLIISARAE
AESKIIEAQAEADSIKIIGDALKEFNIEPTQYIIGTKYITTLISMAKKSKSVNMVYLILL
KF*gsvkk


Translated Amino Acid sequence (All Frames)
Frame A:
tpky**yqr*mvqifh*sf*qvlldllc**ly*iffqrsl*lkkahvsl*kdlvnftrnv
mqvfmy*yhslmklnhyfgdiqqlimiqifiqqvnkiik*lkn*cikliqesh*wiflyn
qllhvim*rlkyiqcyyivllirleqfmkfmi*hyv*rnwfkhh*dqslviwv*mil*pq
erklikh*c*rlvvsf*ilvln*kklk---

---YKVTQKLMYKIDTRESLMDFPLQSIITRDNVKIKVHPMLLYRIVDPIRAVYEVYDLA
LCVEKLVQTSLRSIIGDMGLDDTLASREEINKTLMLKISSIFLNFGLKLEKVEILEILPS
QSIQDALHLQISSERVRRANVISAEGFREQTKTEAEGDCQAQISLSRGRQQVLIISARAE
AESKIIEAQAEADSIKIIGDALKEFNIEPTQYIIGTKYITTLISMAKKSKSVNMVYLILL
KF*gsvkk

Frame B:
pqntnnikdewcryfinrfsrfcwiycvnnyiesffkdlys*krhmchcrkiw*isqem*
cryscistih**n*titleiynnll*fkylynr*tkl*snskinv*n*ykrvingfsfti
nyyt**ckd*stsnvtisyc*sd*ssl*sl*fsimcreigsnitkinhw*ygfr*yfslk
rgn**ninvkd**ylfkfws*irks*n---

---ik*lkn*cikliqesh*wiflynqllhvim*rlkyiqcyyivllirleqfmkfmi*h
yv*rnwfkhh*dqslviwv*mil*pqerklikh*c*rlvvsf*ilvln*kklkf*kfylh
nqfkmhyiykfhqnvyveqm*fqqkvlenklkqkqkvivklkfhyqeednkf*lylqeqr
lnqrllkhklkliqlkslvml*knltlnqlni*lvlni*ll*flwlknqnlliwftlffs
nfrvllk

Frame C:
PKILIISKMNGADISLIVLAGFVGFIVLIIILNLFSKIFIVEKGTCVIVERFGKFHKKCD
AGIHVLVPFIDEIKPLLWRYTTTYYDSNIYTTGKQNYKVTQKLMYKIDTRESLMDFPLQS
IITRDNVKIKVHPMLLYRIVDPIRAVYEVYDLALCVEKLVQTSLRSIIGDMGLDDTLASR
EEINKTLMLKISSIFLNFGLKLEKVEI---

---*snskinv*n*ykrvingfsftinyyt**ckd*stsnvtisyc*sd*ssl*sl*fsi
mcreigsnitkinhw*ygfr*yfslkrgn**ninvkd**ylfkfws*irks*nfrnftft
insrcitftnfirtct*skcnfsrrf*rtn*nrsrr*lsssnfiikrkttsfnyicksrg
*ikdy*sts*s*fn*nhw*cfkri*h*tnsiynwy*iynyfnfyg*kikic*yglpyssq
ilgfc*k

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFN233 (AFN233Q) /CSM/AF/AFN2-B/AFN233Q.Seq.d/ 2652 0.0
VFA363 (VFA363Q) /CSM/VF/VFA3-C/VFA363Q.Seq.d/ 1312 0.0
SFF641 (SFF641Q) /CSM/SF/SFF6-B/SFF641Q.Seq.d/ 1285 0.0
VFF691 (VFF691Q) /CSM/VF/VFF6-D/VFF691Q.Seq.d/ 1265 0.0
SFD701 (SFD701Q) /CSM/SF/SFD7-A/SFD701Q.Seq.d/ 1185 0.0
SSK826 (SSK826Q) /CSM/SS/SSK8-B/SSK826Q.Seq.d/ 1174 0.0
AHE863 (AHE863Q) /CSM/AH/AHE8-C/AHE863Q.Seq.d/ 40 0.088
SSL761 (SSL761Q) /CSM/SS/SSL7-C/SSL761Q.Seq.d/ 38 0.35
SHF416 (SHF416Q) /CSM/SH/SHF4-A/SHF416Q.Seq.d/ 38 0.35
VSK140 (VSK140Q) /CSM/VS/VSK1-B/VSK140Q.Seq.d/ 36 1.4

own update 2009. 4. 3
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ347481) Dictyostelium discoideum cDNA clone:dda27a10, 3' ... 1457 0.0 1
(BJ428912) Dictyostelium discoideum cDNA clone:ddv1n15, 3' e... 1330 0.0 1
(BJ398382) Dictyostelium discoideum cDNA clone:dds12a12, 3' ... 1273 0.0 2
(BJ428672) Dictyostelium discoideum cDNA clone:ddv12e24, 3' ... 1265 0.0 1
(BJ330056) Dictyostelium discoideum cDNA clone:dda27a10, 5' ... 1235 0.0 1
(BJ387076) Dictyostelium discoideum cDNA clone:dds12a12, 5' ... 1187 0.0 1
(BJ410507) Dictyostelium discoideum cDNA clone:ddv12e24, 5' ... 1158 0.0 1
(C94313) Dictyostelium discoideum slug cDNA, clone SSK826. 1120 0.0 3
(BJ399906) Dictyostelium discoideum cDNA clone:dds8b01, 3' e... 1013 0.0 3
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 652 0.0 6
dna update 2009. 4.16
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC116986_71(AC116986|pid:none) Dictyostelium discoideum chromoso... 413 e-114
AE015924_1144(AE015924|pid:none) Porphyromonas gingivalis W83, c... 171 5e-41
CP001055_350(CP001055|pid:none) Elusimicrobium minutum Pei191, c... 166 2e-39
CU466930_1580(CU466930|pid:none) Candidatus Cloacamonas acidamin... 144 9e-33
CP000702_61(CP000702|pid:none) Thermotoga petrophila RKU-1, comp... 142 2e-32
CP000969_61(CP000969|pid:none) Thermotoga sp. RQ2, complete geno... 140 1e-31
CP000916_1709(CP000916|pid:none) Thermotoga neapolitana DSM 4359... 138 5e-31
CR931997_963(CR931997|pid:none) Corynebacterium jeikeium K411 co... 136 2e-30
CP000716_1297(CP000716|pid:none) Thermosipho melanesiensis BI429... 135 2e-30
CP001185_1641(CP001185|pid:none) Thermosipho africanus TCF52B, c... 134 6e-30
protein update 2009. 4. 6
PSORT

psg: 0.00 gvh: 0.00 alm: 0.00 top: 0.00 tms: 0.00 mit: 0.00 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

100.0 %:

>> prediction for AFN233 is

5' end seq. ID AFN233F
5' end seq.
>AFN233F.Seq
ACCCCAAAATACTAATAATATCAAAGATGAATGGTGCAGATATTTCATTAATCGTTTTAG
CAGGTTTTGTTGGATTTATTGTGTTAATAATTATATTGAATCTTTTTTCAAAGATCTTTA
TAGTTGAAAAAGGCACATGTGTCATTGTAGAAAGATTTGGTAAATTTCACAAGAAATGTG
ATGCAGGTATTCATGTATTAGTACCATTCATTGATGAAATTAAACCATTACTTTGGAGAT
ATACAACAACTTATTATGATTCAAATATTTATACAACAGGTAAACAAAATTATAAAGTAA
CTCAAAAATTAATGTATAAAATTGATACAAGAGAGTCATTAATGGATTTTCCTTTACAAT
CAATTATTACACGTGATAATGTAAAGATTAAAGTACATCCAATGTTACTATATCGTATTG
TTGATCCGATTAGAGCAGTTTATGAAGTTTATGATTTAGCATTATGTGTAGAGAAATTGG
TTCAAACATCACTAAGATCAATCATTGGTGATATGGGTTTAGATGATACTTTAGCCTCAA
GAGAGGAAATTAATAAAACATTAATGTTAAAGATTAGTAGTATCTTTTTAAATTTTGGTC
TTAAATTAGAAAAAGTTGAAATTXXXXXXXXXX
Length of 5' end seq. 633
3' end seq. ID AFN233Z
3' end seq.
>AFN233Z.Seq
XXXXXXXXXXTATAAAGTAACTCAAAAATTAATGTATAAAATTGATACAAGAGAGTCATT
AATGGATTTTCCTTTACAATCAATTATTACACGTGATAATGTAAAGATTAAAGTACATCC
AATGTTACTATATCGTATTGTTGATCCGATTAGAGCAGTTTATGAAGTTTATGATTTAGC
ATTATGTGTAGAGAAATTGGTTCAAACATCACTAAGATCAATCATTGGTGATATGGGTTT
AGATGATACTTTAGCCTCAAGAGAGGAAATTAATAAAACATTAATGTTAAAGATTAGTAG
TATCTTTTTAAATTTTGGTCTTAAATTAGAAAAAGTTGAAATTTTAGAAATTTTACCTTC
ACAATCAATTCAAGATGCATTACATTTACAAATTTCATCAGAACGTGTACGTAGAGCAAA
TGTAATTTCAGCAGAAGGTTTTAGAGAACAAACTAAAACAGAAGCAGAAGGTGATTGTCA
AGCTCAAATTTCATTATCAAGAGGAAGACAACAAGTTTTAATTATATCTGCAAGAGCAGA
GGCTGAATCAAAGATTATTGAAGCACAAGCTGAAGCTGATTCAATTAAAATCATTGGTGA
TGCTTTAAAAGAATTTAACATTGAACCAACTCAATATATAATTGGTACTAAATATATAAC
TACTTTAATTTCTATGGCTAAAAAATCAAAATCTGTTAATATGGTTTACCTTATTCTTCT
CAAATTTTAGGGTTCTGTTAAAAAA
Length of 3' end seq. 745
Connected seq. ID AFN233P
Connected seq.
>AFN233P.Seq
ACCCCAAAATACTAATAATATCAAAGATGAATGGTGCAGATATTTCATTAATCGTTTTAG
CAGGTTTTGTTGGATTTATTGTGTTAATAATTATATTGAATCTTTTTTCAAAGATCTTTA
TAGTTGAAAAAGGCACATGTGTCATTGTAGAAAGATTTGGTAAATTTCACAAGAAATGTG
ATGCAGGTATTCATGTATTAGTACCATTCATTGATGAAATTAAACCATTACTTTGGAGAT
ATACAACAACTTATTATGATTCAAATATTTATACAACAGGTAAACAAAATTATAAAGTAA
CTCAAAAATTAATGTATAAAATTGATACAAGAGAGTCATTAATGGATTTTCCTTTACAAT
CAATTATTACACGTGATAATGTAAAGATTAAAGTACATCCAATGTTACTATATCGTATTG
TTGATCCGATTAGAGCAGTTTATGAAGTTTATGATTTAGCATTATGTGTAGAGAAATTGG
TTCAAACATCACTAAGATCAATCATTGGTGATATGGGTTTAGATGATACTTTAGCCTCAA
GAGAGGAAATTAATAAAACATTAATGTTAAAGATTAGTAGTATCTTTTTAAATTTTGGTC
TTAAATTAGAAAAAGTTGAAATT----------TATAAAGTAACTCAAAAATTAATGTAT
AAAATTGATACAAGAGAGTCATTAATGGATTTTCCTTTACAATCAATTATTACACGTGAT
AATGTAAAGATTAAAGTACATCCAATGTTACTATATCGTATTGTTGATCCGATTAGAGCA
GTTTATGAAGTTTATGATTTAGCATTATGTGTAGAGAAATTGGTTCAAACATCACTAAGA
TCAATCATTGGTGATATGGGTTTAGATGATACTTTAGCCTCAAGAGAGGAAATTAATAAA
ACATTAATGTTAAAGATTAGTAGTATCTTTTTAAATTTTGGTCTTAAATTAGAAAAAGTT
GAAATTTTAGAAATTTTACCTTCACAATCAATTCAAGATGCATTACATTTACAAATTTCA
TCAGAACGTGTACGTAGAGCAAATGTAATTTCAGCAGAAGGTTTTAGAGAACAAACTAAA
ACAGAAGCAGAAGGTGATTGTCAAGCTCAAATTTCATTATCAAGAGGAAGACAACAAGTT
TTAATTATATCTGCAAGAGCAGAGGCTGAATCAAAGATTATTGAAGCACAAGCTGAAGCT
GATTCAATTAAAATCATTGGTGATGCTTTAAAAGAATTTAACATTGAACCAACTCAATAT
ATAATTGGTACTAAATATATAACTACTTTAATTTCTATGGCTAAAAAATCAAAATCTGTT
AATATGGTTTACCTTATTCTTCTCAAATTTTAGGGTTCTGTTAAAAAA
Length of connected seq. 1358
Full length Seq ID -
Full length Seq. -
Length of full length seq. -