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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFN192
Library VF
(Link to library)
Clone ID VFN192
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15589-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>VFN192 (VFN192Q) /CSM/VF/VFN1-D/VFN192Q.Seq.d/
TGGAATTTTTCTAATTTTTAATTTTTTTATATATATACATAAATATTTATTTTTATTTTT
ATTTTTTTTATAATTTTCCAACATAACAATATCTAATTATAATTTGGTATTAATAGTGTA
ATATTTGTTTTTTTTTTTTTTNAAAAAXXXXXXXXXX
sequence update 2001.11.22
Translated Amino Acid sequence 
GIFLIFNFFIYIHKYLFLFLFFL*fsnitisnynlvliv*ylffffxk---
Translated Amino Acid sequence (All Frames) 
Frame A:
wnfsnf*ffyiyt*ififififfiifqhnni*l*fginsvifvffffx---


Frame B:
GIFLIFNFFIYIHKYLFLFLFFL*fsnitisnynlvliv*ylffffxk---


Frame C:
eff*fliflyiyiniyfyfyffynfpt*qyliiiwy**cnicffffxk---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFN192 (VFN192Q) /CSM/VF/VFN1-D/VFN192Q.Seq.d/                        100   1e-20
VFN105 (VFN105Q) /CSM/VF/VFN1-A/VFN105Q.Seq.d/                        100   1e-20
VFL703 (VFL703Q) /CSM/VF/VFL7-A/VFL703Q.Seq.d/                        100   1e-20
VFJ870 (VFJ870Q) /CSM/VF/VFJ8-C/VFJ870Q.Seq.d/                        100   1e-20
VFJ151 (VFJ151Q) /CSM/VF/VFJ1-C/VFJ151Q.Seq.d/                        100   1e-20
VFA731 (VFA731Q) /CSM/VF/VFA7-B/VFA731Q.Seq.d/                        100   1e-20
SSC647 (SSC647Q) /CSM/SS/SSC6-B/SSC647Q.Seq.d/                        100   1e-20
SFI646 (SFI646Q) /CSM/SF/SFI6-B/SFI646Q.Seq.d/                        100   1e-20
SFG838 (SFG838Q) /CSM/SF/SFG8-B/SFG838Q.Seq.d/                        100   1e-20
CFK151 (CFK151Q) /CSM/CF/CFK1-C/CFK151Q.Seq.d/                        100   1e-20
own update 2003.10.15
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(L16578) Dictyostelium discoideum HIV1 TAT-binding protein h...   100   3e-17  1
(AU071858) Dictyostelium discoideum slug cDNA, clone SSC647.      100   3e-17  1
(BJ416937) Dictyostelium discoideum cDNA clone:ddv27g23, 5' ...   100   3e-17  1
(BJ416728) Dictyostelium discoideum cDNA clone:ddv27i01, 5' ...   100   3e-17  1
(BJ415883) Dictyostelium discoideum cDNA clone:ddv24f01, 5' ...   100   3e-17  1
(BJ414862) Dictyostelium discoideum cDNA clone:ddv20l18, 5' ...   100   3e-17  1
(BJ414543) Dictyostelium discoideum cDNA clone:ddv19e13, 5' ...   100   3e-17  1
(BJ410940) Dictyostelium discoideum cDNA clone:ddv2n07, 5' e...   100   3e-17  1
(BJ390958) Dictyostelium discoideum cDNA clone:dds14l10, 5' ...   100   3e-17  1
(BJ389340) Dictyostelium discoideum cDNA clone:dds18k12, 5' ...   100   3e-17  1
dna update 2009. 4.30
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 97,399,615
protein update 2009. 6.24
PSORT 

 psg: 0.95  gvh: 0.25  alm: 0.33  top: 0.57  tms: 0.00  mit: 0.31  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 36.0 %: nuclear
	 12.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  8.0 %: plasma membrane

>> prediction for VFN192 is cyt
5' end seq. ID VFN192F
5' end seq. 
>VFN192F.Seq
TGGAATTTTTCTAATTTTTAATTTTTTTATATATATACATAAATATTTATTTTTATTTTT
ATTTTTTTTATAATTTTCCAACATAACAATATCTAATTATAATTTGGTATTAATAGTGTA
ATATTTGTTTTTTTTTTTTTTNAAAAANNNNNNNNNN
Length of 5' end seq. 157
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -