VFN190 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

VFN190
Library	VF (Link to library)
Clone ID	VFN190 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U16272-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/VF/VFN1-D/VFN190Q.Seq.d/
Representative seq. ID	VFN190P (Link to Original site)
Representative DNA sequence	>VFN190 (VFN190Q) /CSM/VF/VFN1-D/VFN190Q.Seq.d/ GTTAGTCACTTCTAAACAACAATAACAATATGAGTCATCGTAAATTTGAAGCTCCACGTC ACGGTAATCTCGGTTTCAGACCAAGAAAGAGAGCCGCCAGACATCAAGGTAAAGTCAAGT CATTCCCAAAGGATGACCGTACCCAAAAAGTCCACTTAACTGCATTCATGGGTTACAAAG CTGGTATGACTCACGTTGTCAGAGATTTAGAAAAACCAGGTTCAAAGATGCACAAAAAAG AAATCGTTGAAGCCGTCACCATCATTGAATGTCCACCAATGTACATTGTTGGTTTAGTTG GTTATGTTGAAACCGCTCAAGGTCTCAAAACCTACAAAACCGTCTGGGCTCAACATTTAA GTGATAACTTCCGTAGAAGATTATACAAAAACTGGTACAAATCAAAATCAAAGAAAGCTT TCACCAAATACGTTAAACAATACGAAACTGAAGAAGGTAAAAAATCAATTGAAGCCTCTC TCCAAGCCATCAAAAAGAGATGTTCAGTCGTCCGTGTCATTGCTCACACTCAAGTTCACA AATTAAAATTAACTCAAAAGAAAGCACACGTCCTTGAAATCCAAGTCAATGGTGGTTCAA TCGTCGAAAAAGXXXXXXXXXXCAAGTCAATGGTGGTTCAATCGTCGAAAAAGTTAACTT TGCTGTTGCCAACTTTGAAAAGACCGTCAACGTCACTGGTGTCTTTGCCGAAAATGAATT AATCGATGTTATCGGTGTAACCAAAGGTAAAGGTTTCAATGGTGTCATTAAAAGATGGGG TGTCCGTAAATTACCAAGAAAGACCCATAAAGGTTTAAGAAAGGTTGCCTGTATTGGTGC ATGGCATCCATCCCGTGTTAGTACCACCGTCCCAAGAGCTGGTCAACTCGGTTACCATCA TCGTGTCGAAAGAAACAAGAAGATTTACAGAATCGGTCAAGCTCAACCAGAAGACAGTAA ACAAATCTCAACCGGTAAGACTGAATTCGATTTAACTGAAAAGACTATCAATCCAATGGG TGGTTTCGCTCACTACGGTATGGTTAAACATGAATTCTTAATGCTTAAAGGTTGTGTTGC TGGTCCAAGAAAGAGAGCCTTAACCTTAAGAAAGAGTATCACCACTCAAACTGGTCGTGC TGCCCTCGAGAAAATCACTCTCAAATTCATCGATACCTCCAGCAAGTTTGGTCACGGTCT TCATCAAACCGCTGAAGATAAGACTAAATATTTCGGCGTCAAGAAATCAAGATCAACTAA GGCTTAAATTCAATAAATTAGATTTC
sequence update	2001.11.22
Translated Amino Acid sequence	SLLNNNNNMSHRKFEAPRHGNLGFRPRKRAARHQGKVKSFPKDDRTQKVHLTAFMGYKA GMTHVVRDLEKPGSKMHKKEIVEAVTIIECPPMYIVGLVGYVETAQGLKTYKTVWAQHLS DNFRRRLYKNWYKSKSKKAFTKYVKQYETEEGKKSIEASLQAIKKRCSVVRVIAHTQVHK LKLTQKKAHVLEIQVNGGSIVEK--- ---QVNGGSIVEKVNFAVANFEKTVNVTGVFAENELIDVIGVTKGKGFNGVIKRWGVRKL PRKTHKGLRKVACIGAWHPSRVSTTVPRAGQLGYHHRVERNKKIYRIGQAQPEDSKQIST GKTEFDLTEKTINPMGGFAHYGMVKHEFLMLKGCVAGPRKRALTLRKSITTQTGRAALEK ITLKFIDTSSKFGHGLHQTAEDKTKYFGVKKSRSTKAiq*irf
Translated Amino Acid sequence (All Frames)	Frame A: vshfttitivivnlklhvtvisvsdqereppdikvksshsqrmtvpkkstlhswvtk lvltlseiknqvqrctkkkslkpspslnvhqctllvlvmlkplkvskptkpsglni* vitsvedytktgtnqnqrklspntlnntklkkvknqlkplskpskrdvqssvslltlkft nnlkrkhtslksksmvvqsskk--- ---QVNGGSIVEKVNFAVANFEKTVNVTGVFAENELIDVIGVTKGKGFNGVIKRWGVRKL PRKTHKGLRKVACIGAWHPSRVSTTVPRAGQLGYHHRVERNKKIYRIGQAQPEDSKQIST GKTEFDLTEKTINPMGGFAHYGMVKHEFLMLKGCVAGPRKRALTLRKSITTQTGRAALEK ITLKFIDTSSKFGHGLHQTAEDKTKYFGVKKSRSTKAiqirf Frame B: lvtskqqqyessisstsrsrfqtkkesrqtsrsqvipkgpypksplncihglqs wydsrcqrfrktrfkdaqkrnrsrhhhmstnvhcwfswlcnrsrsqnlqnrlgstfk lpkiiqklvqikikesfhqirtirnrrkinslspshqkemfsrpchcshsssq ikinskestrpnpsqwwfnrrk--- ---ksmvvqsskkltlllptlkrpstslvslpkmnsmlsvpkvkvsmvslkdgvsvny qerpikverlpvlvhgihpvlvppsqelvnsvtiivsketrrftesvklnqktvnksqp vrlnsilkrlsiqwvvslttvwlnmnsclkvvllvqereppervsplklvvlpsrk slsnssippaslvtvfikplkirlnisasrnqdqlrlkfnkldf Frame C: SLLNNNNNMSHRKFEAPRHGNLGFRPRKRAARHQGKVKSFPKDDRTQKVHLTAFMGYKA GMTHVVRDLEKPGSKMHKKEIVEAVTIIECPPMYIVGLVGYVETAQGLKTYKTVWAQHLS DNFRRRLYKNWYKSKSKKAFTKYVKQYETEEGKKSIEASLQAIKKRCSVVRVIAHTQVHK LKLTQKKAHVLEIQVNGGSIVEK--- ---sqwwfnrrkslcccqlkdrqrhwclcrkinrcyrcnqrrfqwchkmgcpit kkdprfkkgclywcmasipcyhrpkswstrlpsscrkkqedlqnrssstrrqtnlnr dirfnkdyqsngwfrslrygtilnarlccwskkeslnlkkeyhhsnwsccpren hsqihrylqqvwsrsssnrrdifrrqeikinglnsin*i
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value VFN190 (VFN190Q) /CSM/VF/VFN1-D/VFN190Q.Seq.d/ 2490 0.0 VFN470 (VFN470Q) /CSM/VF/VFN4-C/VFN470Q.Seq.d/ 1308 0.0 VFM481 (VFM481Q) /CSM/VF/VFM4-D/VFM481Q.Seq.d/ 1308 0.0 VFM390 (VFM390Q) /CSM/VF/VFM3-D/VFM390Q.Seq.d/ 1308 0.0 VFM291 (VFM291Q) /CSM/VF/VFM2-D/VFM291Q.Seq.d/ 1308 0.0 VFL721 (VFL721Q) /CSM/VF/VFL7-A/VFL721Q.Seq.d/ 1308 0.0 VFL717 (VFL717Q) /CSM/VF/VFL7-A/VFL717Q.Seq.d/ 1308 0.0 VFL402 (VFL402Q) /CSM/VF/VFL4-A/VFL402Q.Seq.d/ 1308 0.0 VFL302 (VFL302Q) /CSM/VF/VFL3-A/VFL302Q.Seq.d/ 1308 0.0 VFI836 (VFI836Q) /CSM/VF/VFI8-B/VFI836Q.Seq.d/ 1308 0.0
own update	2004.12.24
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N (BJ435642) Dictyostelium discoideum cDNA clone:ddv27c23, 3' ... 1316 0.0 1 (AU052238) Dictyostelium discoideum slug cDNA, clone SLA404. 1308 0.0 1 (AU040016) Dictyostelium discoideum slug cDNA, clone SLH448. 1308 0.0 1 (AU040010) Dictyostelium discoideum slug cDNA, clone SLH434. 1308 0.0 1 (AU039961) Dictyostelium discoideum slug cDNA, clone SLG843. 1308 0.0 1 (AU039914) Dictyostelium discoideum slug cDNA, clone SLG735. 1308 0.0 1 (AU039555) Dictyostelium discoideum slug cDNA, clone SLE743. 1308 0.0 1 (AU039545) Dictyostelium discoideum slug cDNA, clone SLE726. 1308 0.0 1 (AU039476) Dictyostelium discoideum slug cDNA, clone SLH858. 1308 0.0 1 (AU039341) Dictyostelium discoideum slug cDNA, clone SLH591. 1308 0.0 1
dna update	2009. 4.30
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value (P34113) RecName: Full=60S ribosomal protein L3; &JC4254(JC4254... 432 e-119 AM471157_1(AM471157\|pid:none) Vitis vinifera contig VV78X211407.... 286 8e-76 CR926481_1(CR926481\|pid:none) Pongo abelii mRNA; cDNA DKFZp468G0... 285 2e-75 BC008492_1(BC008492\|pid:none) Homo sapiens ribosomal protein L3,... 285 2e-75 (P39023) RecName: Full=60S ribosomal protein L3; AltName: Full=H... 285 2e-75 EF144245_1(EF144245\|pid:none) Populus trichocarpa clone PX0011_L... 285 2e-75 EF146052_1(EF146052\|pid:none) Populus trichocarpa clone WS0115_D... 285 3e-75 AK151142_1(AK151142\|pid:none) Mus musculus bone marrow macrophag... 283 7e-75 EF145479_1(EF145479\|pid:none) Populus trichocarpa clone WS01125_... 283 7e-75 AK151084_1(AK151084\|pid:none) Mus musculus bone marrow macrophag... 283 9e-75
protein update	2009. 6.24
PSORT	psg: 0.60 gvh: 0.20 alm: 0.36 top: 0.53 tms: 0.00 mit: 0.37 mip: 0.06 nuc: 0.27 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.50 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 80.0 %: cytoplasmic 16.0 %: mitochondrial 4.0 %: nuclear >> prediction for VFN190 is cyt
5' end seq. ID	VFN190F
5' end seq.	>VFN190F.Seq GTTAGTCACTTCTAAACAACAATAACAATATGAGTCATCGTAAATTTGAAGCTCCACGTC ACGGTAATCTCGGTTTCAGACCAAGAAAGAGAGCCGCCAGACATCAAGGTAAAGTCAAGT CATTCCCAAAGGATGACCGTACCCAAAAAGTCCACTTAACTGCATTCATGGGTTACAAAG CTGGTATGACTCACGTTGTCAGAGATTTAGAAAAACCAGGTTCAAAGATGCACAAAAAAG AAATCGTTGAAGCCGTCACCATCATTGAATGTCCACCAATGTACATTGTTGGTTTAGTTG GTTATGTTGAAACCGCTCAAGGTCTCAAAACCTACAAAACCGTCTGGGCTCAACATTTAA GTGATAACTTCCGTAGAAGATTATACAAAAACTGGTACAAATCAAAATCAAAGAAAGCTT TCACCAAATACGTTAAACAATACGAAACTGAAGAAGGTAAAAAATCAATTGAAGCCTCTC TCCAAGCCATCAAAAAGAGATGTTCAGTCGTCCGTGTCATTGCTCACACTCAAGTTCACA AATTAAAATTAACTCAAAAGAAAGCACACGTCCTTGAAATCCAAGTCAATGGTGGTTCAA TCGTCGAAAAAGNNNNNNNNNN
Length of 5' end seq.	622
3' end seq. ID	VFN190Z
3' end seq.	>VFN190Z.Seq NNNNNNNNNNCAAGTCAATGGTGGTTCAATCGTCGAAAAAGTTAACTTTGCTGTTGCCAA CTTTGAAAAGACCGTCAACGTCACTGGTGTCTTTGCCGAAAATGAATTAATCGATGTTAT CGGTGTAACCAAAGGTAAAGGTTTCAATGGTGTCATTAAAAGATGGGGTGTCCGTAAATT ACCAAGAAAGACCCATAAAGGTTTAAGAAAGGTTGCCTGTATTGGTGCATGGCATCCATC CCGTGTTAGTACCACCGTCCCAAGAGCTGGTCAACTCGGTTACCATCATCGTGTCGAAAG AAACAAGAAGATTTACAGAATCGGTCAAGCTCAACCAGAAGACAGTAAACAAATCTCAAC CGGTAAGACTGAATTCGATTTAACTGAAAAGACTATCAATCCAATGGGTGGTTTCGCTCA CTACGGTATGGTTAAACATGAATTCTTAATGCTTAAAGGTTGTGTTGCTGGTCCAAGAAA GAGAGCCTTAACCTTAAGAAAGAGTATCACCACTCAAACTGGTCGTGCTGCCCTCGAGAA AATCACTCTCAAATTCATCGATACCTCCAGCAAGTTTGGTCACGGTCTTCATCAAACCGC TGAAGATAAGACTAAATATTTCGGCGTCAAGAAATCAAGATCAACTAAGGCTTAAATTCA ATAAATTAGATTTC
Length of 3' end seq.	674
Connected seq. ID	VFN190P
Connected seq.	>VFN190P.Seq GTTAGTCACTTCTAAACAACAATAACAATATGAGTCATCGTAAATTTGAAGCTCCACGTC ACGGTAATCTCGGTTTCAGACCAAGAAAGAGAGCCGCCAGACATCAAGGTAAAGTCAAGT CATTCCCAAAGGATGACCGTACCCAAAAAGTCCACTTAACTGCATTCATGGGTTACAAAG CTGGTATGACTCACGTTGTCAGAGATTTAGAAAAACCAGGTTCAAAGATGCACAAAAAAG AAATCGTTGAAGCCGTCACCATCATTGAATGTCCACCAATGTACATTGTTGGTTTAGTTG GTTATGTTGAAACCGCTCAAGGTCTCAAAACCTACAAAACCGTCTGGGCTCAACATTTAA GTGATAACTTCCGTAGAAGATTATACAAAAACTGGTACAAATCAAAATCAAAGAAAGCTT TCACCAAATACGTTAAACAATACGAAACTGAAGAAGGTAAAAAATCAATTGAAGCCTCTC TCCAAGCCATCAAAAAGAGATGTTCAGTCGTCCGTGTCATTGCTCACACTCAAGTTCACA AATTAAAATTAACTCAAAAGAAAGCACACGTCCTTGAAATCCAAGTCAATGGTGGTTCAA TCGTCGAAAAAG----------CAAGTCAATGGTGGTTCAATCGTCGAAAAAGTTAACTT TGCTGTTGCCAACTTTGAAAAGACCGTCAACGTCACTGGTGTCTTTGCCGAAAATGAATT AATCGATGTTATCGGTGTAACCAAAGGTAAAGGTTTCAATGGTGTCATTAAAAGATGGGG TGTCCGTAAATTACCAAGAAAGACCCATAAAGGTTTAAGAAAGGTTGCCTGTATTGGTGC ATGGCATCCATCCCGTGTTAGTACCACCGTCCCAAGAGCTGGTCAACTCGGTTACCATCA TCGTGTCGAAAGAAACAAGAAGATTTACAGAATCGGTCAAGCTCAACCAGAAGACAGTAA ACAAATCTCAACCGGTAAGACTGAATTCGATTTAACTGAAAAGACTATCAATCCAATGGG TGGTTTCGCTCACTACGGTATGGTTAAACATGAATTCTTAATGCTTAAAGGTTGTGTTGC TGGTCCAAGAAAGAGAGCCTTAACCTTAAGAAAGAGTATCACCACTCAAACTGGTCGTGC TGCCCTCGAGAAAATCACTCTCAAATTCATCGATACCTCCAGCAAGTTTGGTCACGGTCT TCATCAAACCGCTGAAGATAAGACTAAATATTTCGGCGTCAAGAAATCAAGATCAACTAA GGCTTAAATTCAATAAATTAGATTTC
Length of connected seq.	1276
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas