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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFN112
Library VF
(Link to library)
Clone ID VFN112
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13423-1
Original site URL
Representative seq. ID VFN112E
(Link to Original site)
Representative DNA sequence 
>VFN112 (VFN112Q) /CSM/VF/VFN1-A/VFN112Q.Seq.d/
GAGCTCACAATCAAAATTTATTTAAATATTTAAAATGTTAAAGAATCTTTCAAAAGGATT
TCCATCTCTTATAAATAAGAGATCATTTTCAACAATTAATGAAAATCCATTAACAAGAAT
TCATCATGGTTCACGTACACAAACAACAGGATTAGTAGCAACAGTATTTGGAGCAACAGG
ATTCACTGGTAGATATTTAGTACAATTATTAGCACGTACAGGTATTCAAGTAGTTGTACC
ATACAGATGTGAAGATGAAGGTTTTCGTGATCTCAAGGTGTTGGGCGAATTAGGTCAAAT
CATTCCAGTTCGTTTCGATATTAGAGATAGCGAATCAATTGAAAGAGCAATTTCACACTC
AAACATTGTCATCAATATGGCTGGTCGTGATTATGAAACTCGTAATTTCTCACTCGACGA
TATCAATGTTCATGCAGCATCTCGTATCGCTGATTTAAGTAAAAATGTTGAGAAATACAT
TCACGTATCAACCTTGAGAGCATCCGAAGACTCTCCATCCCATTTTTTCACGTTCAAAAG
CAATCGGTGAAAAATTAACAAGAGAAATCATTCCAAATTGTACAGTAGTTAGACCATCAA
TCATCTTTGGTGATGAAGATAAATTCATTAACAAATGGTCAAAAGTCTCTCAAAATTGGC
CATTCATTCCAAGATATAATCAACAACATAAAATTCAACCACTTCATTGTTACGATTTAG
CAAGTGGTATTTTATCAATTTTGGAAACACCAGGTACAAGTGGTAAAGTTTATGAATTTG
CAGGTGATGAAGTATTTACATGGGATGAATTTTTAGATATGATTATTGATGGTACAGCTC
AATACAGTAAATTAAATATTCCAGTTTCAAATGATTTCATGAAATTCATCTCTGAACATT
TATTAGAAAGATTCGCTCGTAATCCAAATTTCATTAAAGATCAAATCGATTATCATAATC
AAGATATGACCACTACTGTTGGTGCATTAACTTTGAAAGATTTAAATGTTACAACTACCC
CAATTCAAGAAAAATTAATTAGACTTTCTAGAATGTACAGACCTGGTAAATTCTTCAATG
CTATTGCAAATCCACAAAATAAATAAGAAATAGTAAAATTAATAATAATATTAAATAATA
ATAAAAAAAATAATTCATATACATAAATCAATTTAAATTAAA
sequence update 2001.11.24
Translated Amino Acid sequence 
ahnqnlfkylkc*rifqkdfhll*irdhfqqlmkih*qefimvhvhkqqd**qqyleqqd
slvdi*yny*hvqvfk*lyhtdvkmkvfvisrcwan*vksfqfvsileianqlkeqfhtq
tlssiwlvvimklvishstismfmqhlvsli*vkmlrntftyqp*EHPKTLHPIFSRSKA
IGEKLTREIIPNCTVVRPSIIFGDEDKFINKWSKVSQNWPFIPRYNQQHKIQPLHCYDLA
SGILSILETPGTSGKVYEFAGDEVFTWDEFLDMIIDGTAQYSKLNIPVSNDFMKFISEHL
LERFARNPNFIKDQIDYHNQDMTTTVGALTLKDLNVTTTPIQEKLIRLSRMYRPGKFFNA
IANPQNK*eivkliiilnnnkknnsyt*inln*
Translated Amino Acid sequence (All Frames) 
Frame A:
eltikiylni*nvkesfkrisisyk*eiifnn**ksinknsswftytnnrissnsiwsnr
ihw*ifstiistyrysssctiqm*r*rfs*sqgvgrirsnhsssfry*r*rin*ksnftl
khchqygws*l*ns*fltrryqcscsisyr*fk*kc*eihsrinlesirrlsipffhvqk
qsvkn*qeksfqivq*ldhqsslvmkinsltngqkslkighsfqdiinnikfnhfivti*
qvvfyqfwkhqvqvvkfmnlqvmkylhgmnf*i*llmvqlntvn*ifqfqmis*nsslni
y*kdslviqislkiksiiiiki*plllvh*l*ki*mlqlpqfkkn*ldflectdlvnssm
llqihkinkk**n***y*iiikkiihihksi*ik


Frame B:
ssqskfi*ifkmlknlskgfpslinkrsfstinenpltrihhgsrtqttglvatvfgatg
ftgrylvqllartgiqvvvpyrcedegfrdlkvlgelgqiipvrfdirdsesieraishs
nivinmagrdyetrnfslddinvhaasriadlsknvekyihvstlrasedspshfftfks
nr*kinkrnhsklyss*tinhlw**r*ih*qmvkslsklaihski*stt*nsttsllrfs
kwyfinfgntrykw*sl*icr**siymg*ifrydy*wyssiq*ikyssfk*fheihl*tf
irkirs*skfh*rsnrls*srydhycwcinferfkcynypnsrkin*tf*nvqtw*ilqc
yckstk*irnskinnnik***kk*fiyinqfkl


Frame C:
ahnqnlfkylkc*rifqkdfhll*irdhfqqlmkih*qefimvhvhkqqd**qqyleqqd
slvdi*yny*hvqvfk*lyhtdvkmkvfvisrcwan*vksfqfvsileianqlkeqfhtq
tlssiwlvvimklvishstismfmqhlvsli*vkmlrntftyqp*EHPKTLHPIFSRSKA
IGEKLTREIIPNCTVVRPSIIFGDEDKFINKWSKVSQNWPFIPRYNQQHKIQPLHCYDLA
SGILSILETPGTSGKVYEFAGDEVFTWDEFLDMIIDGTAQYSKLNIPVSNDFMKFISEHL
LERFARNPNFIKDQIDYHNQDMTTTVGALTLKDLNVTTTPIQEKLIRLSRMYRPGKFFNA
IANPQNK*eivkliiilnnnkknnsyt*inln*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFN112 (VFN112Q) /CSM/VF/VFN1-A/VFN112Q.Seq.d/                       2171   0.0
VFJ402 (VFJ402Q) /CSM/VF/VFJ4-A/VFJ402Q.Seq.d/                       2145   0.0
VFO396 (VFO396Q) /CSM/VF/VFO3-D/VFO396Q.Seq.d/                       2141   0.0
VFF837 (VFF837Q) /CSM/VF/VFF8-B/VFF837Q.Seq.d/                       2135   0.0
AFJ469 (AFJ469Q) /CSM/AF/AFJ4-C/AFJ469Q.Seq.d/                       2105   0.0
VFN231 (VFN231Q) /CSM/VF/VFN2-B/VFN231Q.Seq.d/                       2093   0.0
VFF805 (VFF805Q) /CSM/VF/VFF8-A/VFF805Q.Seq.d/                       2087   0.0
VFK257 (VFK257Q) /CSM/VF/VFK2-C/VFK257Q.Seq.d/                       2070   0.0
VFK142 (VFK142Q) /CSM/VF/VFK1-B/VFK142Q.Seq.d/                       2030   0.0
VFJ347 (VFJ347Q) /CSM/VF/VFJ3-B/VFJ347Q.Seq.d/                       2006   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ416719) Dictyostelium discoideum cDNA clone:ddv27g03, 5' ...  1283   0.0    1
(BJ435420) Dictyostelium discoideum cDNA clone:ddv27g03, 3' ...  1134   0.0    2
(BJ432551) Dictyostelium discoideum cDNA clone:ddv19d02, 3' ...  1134   0.0    2
(BJ432147) Dictyostelium discoideum cDNA clone:ddv17f20, 3' ...  1134   0.0    2
(BJ428483) Dictyostelium discoideum cDNA clone:ddv12j02, 3' ...  1134   0.0    2
(BJ372007) Dictyostelium discoideum cDNA clone:ddc10i23, 3' ...  1134   0.0    2
(BJ436101) Dictyostelium discoideum cDNA clone:ddv29p23, 3' ...  1126   0.0    2
(BJ428544) Dictyostelium discoideum cDNA clone:ddv12j10, 3' ...  1126   0.0    2
(BJ434314) Dictyostelium discoideum cDNA clone:ddv16c14, 3' ...  1104   0.0    2
(BJ344526) Dictyostelium discoideum cDNA clone:dda19j18, 3' ...  1078   0.0    2
dna update 2009. 4.28
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q559Z0) RecName: Full=NADH dehydrogenase [ubiquinone] 1 alpha s...   394   0.0
AC115607_16(AC115607|pid:none) Dictyostelium discoideum chromoso...   394   0.0
AP004028_2(AP004028|pid:none) Oryza sativa Japonica Group genomi...   143   2e-53
BT052059_1(BT052059|pid:none) Medicago truncatula clone MTYF9_FA...   140   1e-50
BT040768_1(BT040768|pid:none) Zea mays full-length cDNA clone ZM...   135   3e-50
EU961956_1(EU961956|pid:none) Zea mays clone 239283 NADH-ubiquin...   135   4e-50
EF146622_1(EF146622|pid:none) Populus trichocarpa clone WS01210_...   135   5e-49
AK317648_1(AK317648|pid:none) Arabidopsis thaliana AT2G20360 mRN...   140   2e-48
L04490_1(L04490|pid:none) Homo sapiens (clone CC6) NADH-ubiquino...   144   7e-48
DQ885721_1(DQ885721|pid:none) Gorilla gorilla mitochondrial comp...   144   9e-48
protein update 2009. 7.11
PSORT 

 psg: 0.71  gvh: 0.36  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 28.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system

>> prediction for VFN112 is cyt
5' end seq. ID VFN112F
5' end seq. 
>VFN112F.Seq
GAGCTCACAATCAAAATTTATTTAAATATTTAAAATGTTAAAGAATCTTTCAAAAGGATT
TCCATCTCTTATAAATAAGAGATCATTTTCAACAATTAATGAAAATCCATTAACAAGAAT
TCATCATGGTTCACGTACACAAACAACAGGATTAGTAGCAACAGTATTTGGAGCAACAGG
ATTCACTGGTAGATATTTAGTACAATTATTAGCACGTACAGGTATTCAAGTAGTTGTACC
ATACAGATGTGAAGATGAAGGTTTTCGTGATCTCAAGGTGTTGGGCGAATTAGGTCAAAT
CATTCCAGTTCGTTTCGATATTAGAGATAGCGAATCAATTGAAAGAGCAATTTCACACTC
AAACATTGTCATCAATATGGCTGGTCGTGATTATGAAACTCGTAATTTCTCACTCGACGA
TATCAATGTTCATGCAGCATCTCGTATCGCTGATTTAAGTAAAAATGTTGAGAAATACAT
TCACGTATCAACCTTGAGAGCATCCGAAGACTCTCCATCCCATTTTTTCACGTTCAAAAG
CAATCGGTGAAAAATTAACAAGAGAAATCATTCCAAATTGTACAGTAGTTAGACCATCAA
TCATCTTTGGTGATGAAGATAAATTCATTAACAAATGGTCAAAAGTCNNNNNNNNNN
Length of 5' end seq. 657
3' end seq. ID VFN112Z
3' end seq. 
>VFN112Z.Seq
NNNNNNNNNNTTAAGTAAAAATGTTGAGAAATACATTCACGTATCAACCTTGAGAGCATC
CGAAGACTCTCCATCCCATTTTTCACGTTCAAAAGCAATCGGTGAAAAATTAACAAGAGA
AATCATTCCAAATTGTACAGTAGTTAGACCATCAATCATCTTTGGTGATGAAGATAAATT
CATTAACAAATGGTCAAAAGTCTCTCAAAATTGGCCATTCATTCCAAGATATAATCAACA
ACATAAAATTCAACCACTTCATTGTTACGATTTAGCAAGTGGTATTTTATCAATTTTGGA
AACACCAGGTACAAGTGGTAAAGTTTATGAATTTGCAGGTGATGAAGTATTTACATGGGA
TGAATTTTTAGATATGATTATTGATGGTACAGCTCAATACAGTAAATTAAATATTCCAGT
TTCAAATGATTTCATGAAATTCATCTCTGAACATTTATTAGAAAGATTCGCTCGTAATCC
AAATTTCATTAAAGATCAAATCGATTATCATAATCAAGATATGACCACTACTGTTGGTGC
ATTAACTTTGAAAGATTTAAATGTTACAACTACCCCAATTCAAGAAAAATTAATTAGACT
TTCTAGAATGTACAGACCTGGTAAATTCTTCAATGCTATTGCAAATCCACAAAATAAATA
AGAAATAGTAAAATTAATAATAATATTAAATAATAATAAAAAAAATAATTCATATACATA
AATCAATTTAAATTAAA
Length of 3' end seq. 737
Connected seq. ID VFN112P
Connected seq. 
>VFN112P.Seq
GAGCTCACAATCAAAATTTATTTAAATATTTAAAATGTTAAAGAATCTTTCAAAAGGATT
TCCATCTCTTATAAATAAGAGATCATTTTCAACAATTAATGAAAATCCATTAACAAGAAT
TCATCATGGTTCACGTACACAAACAACAGGATTAGTAGCAACAGTATTTGGAGCAACAGG
ATTCACTGGTAGATATTTAGTACAATTATTAGCACGTACAGGTATTCAAGTAGTTGTACC
ATACAGATGTGAAGATGAAGGTTTTCGTGATCTCAAGGTGTTGGGCGAATTAGGTCAAAT
CATTCCAGTTCGTTTCGATATTAGAGATAGCGAATCAATTGAAAGAGCAATTTCACACTC
AAACATTGTCATCAATATGGCTGGTCGTGATTATGAAACTCGTAATTTCTCACTCGACGA
TATCAATGTTCATGCAGCATCTCGTATCGCTGATTTAAGTAAAAATGTTGAGAAATACAT
TCACGTATCAACCTTGAGAGCATCCGAAGACTCTCCATCCCATTTTTTCACGTTCAAAAG
CAATCGGTGAAAAATTAACAAGAGAAATCATTCCAAATTGTACAGTAGTTAGACCATCAA
TCATCTTTGGTGATGAAGATAAATTCATTAACAAATGGTCAAAAGTC----------TTA
AGTAAAAATGTTGAGAAATACATTCACGTATCAACCTTGAGAGCATCCGAAGACTCTCCA
TCCCATTTTTCACGTTCAAAAGCAATCGGTGAAAAATTAACAAGAGAAATCATTCCAAAT
TGTACAGTAGTTAGACCATCAATCATCTTTGGTGATGAAGATAAATTCATTAACAAATGG
TCAAAAGTCTCTCAAAATTGGCCATTCATTCCAAGATATAATCAACAACATAAAATTCAA
CCACTTCATTGTTACGATTTAGCAAGTGGTATTTTATCAATTTTGGAAACACCAGGTACA
AGTGGTAAAGTTTATGAATTTGCAGGTGATGAAGTATTTACATGGGATGAATTTTTAGAT
ATGATTATTGATGGTACAGCTCAATACAGTAAATTAAATATTCCAGTTTCAAATGATTTC
ATGAAATTCATCTCTGAACATTTATTAGAAAGATTCGCTCGTAATCCAAATTTCATTAAA
GATCAAATCGATTATCATAATCAAGATATGACCACTACTGTTGGTGCATTAACTTTGAAA
GATTTAAATGTTACAACTACCCCAATTCAAGAAAAATTAATTAGACTTTCTAGAATGTAC
AGACCTGGTAAATTCTTCAATGCTATTGCAAATCCACAAAATAAATAAGAAATAGTAAAA
TTAATAATAATATTAAATAATAATAAAAAAAATAATTCATATACATAAATCAATTTAAAT
TAAA
Length of connected seq. 1374
Full length Seq ID VFN112E
Full length Seq. 
>VFN112E.Seq
GAGCTCACAATCAAAATTTATTTAAATATTTAAAATGTTAAAGAATCTTTCAAAAGGATT
TCCATCTCTTATAAATAAGAGATCATTTTCAACAATTAATGAAAATCCATTAACAAGAAT
TCATCATGGTTCACGTACACAAACAACAGGATTAGTAGCAACAGTATTTGGAGCAACAGG
ATTCACTGGTAGATATTTAGTACAATTATTAGCACGTACAGGTATTCAAGTAGTTGTACC
ATACAGATGTGAAGATGAAGGTTTTCGTGATCTCAAGGTGTTGGGCGAATTAGGTCAAAT
CATTCCAGTTCGTTTCGATATTAGAGATAGCGAATCAATTGAAAGAGCAATTTCACACTC
AAACATTGTCATCAATATGGCTGGTCGTGATTATGAAACTCGTAATTTCTCACTCGACGA
TATCAATGTTCATGCAGCATCTCGTATCGCTGATTTAAGTAAAAATGTTGAGAAATACAT
TCACGTATCAACCTTGAGAGCATCCGAAGACTCTCCATCCCATTTTTTCACGTTCAAAAG
CAATCGGTGAAAAATTAACAAGAGAAATCATTCCAAATTGTACAGTAGTTAGACCATCAA
TCATCTTTGGTGATGAAGATAAATTCATTAACAAATGGTCAAAAGTCTCTCAAAATTGGC
CATTCATTCCAAGATATAATCAACAACATAAAATTCAACCACTTCATTGTTACGATTTAG
CAAGTGGTATTTTATCAATTTTGGAAACACCAGGTACAAGTGGTAAAGTTTATGAATTTG
CAGGTGATGAAGTATTTACATGGGATGAATTTTTAGATATGATTATTGATGGTACAGCTC
AATACAGTAAATTAAATATTCCAGTTTCAAATGATTTCATGAAATTCATCTCTGAACATT
TATTAGAAAGATTCGCTCGTAATCCAAATTTCATTAAAGATCAAATCGATTATCATAATC
AAGATATGACCACTACTGTTGGTGCATTAACTTTGAAAGATTTAAATGTTACAACTACCC
CAATTCAAGAAAAATTAATTAGACTTTCTAGAATGTACAGACCTGGTAAATTCTTCAATG
CTATTGCAAATCCACAAAATAAATAAGAAATAGTAAAATTAATAATAATATTAAATAATA
ATAAAAAAAATAATTCATATACATAAATCAATTTAAATTAAA
Length of full length seq. 1182