VFM738
Library VF
(Link to library)
Clone ID VFM738
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U15031-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>VFM738 (VFM738Q) /CSM/VF/VFM7-B/VFM738Q.Seq.d/
CTTTTTCTTTCATCCACATAATGTCTGAACAAATCAAAAAGCGTACTTTCAAAAAGTTCA
CATACTCTGGTGTTGCCTTAGAGAGTCTCCTTGACTTAAAGGAAGAACAATTAATTTCAT
TATTGAGATGTCGTGCTCGTAGAAAGTTAAGACGTGAAACCCCAATCAAACACGTCAACT
TCTTAAAGAAATGCAGAGCCTCAAAAGCCGCCGTTACCCAAGTCGGTGAAAAACCAGCCC
TCGTCAAAACCCACGCTCGTAACATTTTAATTGTTCCAGAAATGATCGGTTCTGTCATTG
GTATCTACAACGGTAAAGTTTTCAATCAAGTTGAAGTTAAACCAGAAATGATTGGTCACT
ACACTGGTGAATTCTCACTCTCATACAAGAGTGTCAACCATGGTCGTCCAGGTATTGGTG
CTACTCACTCTTCAAGATTCATCCCATTGAAGTAGATTTTTTATATATCTCTTGTAGCTT
TGTTTTAAAATAATAAAGTGATAAAGTTATAAACAGTAGTAATAGTAGAAAAAGAAAAAA
AAAANAAAANAAAANNNNNNNANNNNANNNNNNNNNANNNNAANANNAAAANNNTTTTTT
TTTTTTTTTNAAAXXXXXXXXXX
sequence update 2001.11.22
Translated Amino Acid sequence
FSFIHIMSEQIKKRTFKKFTYSGVALESLLDLKEEQLISLLRCRARRKLRRETPIKHVNF
LKKCRASKAAVTQVGEKPALVKTHARNILIVPEMIGSVIGIYNGKVFNQVEVKPEMIGHY
TGEFSLSYKSVNHGRPGIGATHSSRFIPLK*ifyislvalf*nnkvikl*tvvivekekk
xkxkxxxxxxxxxxxkxxffffx---


Translated Amino Acid sequence (All Frames)
Frame A:
lflsst*clnksksvlsksshtlvlp*rvslt*rknn*fhy*dvvlves*dvkpqsntst
s*rnaepqkpplpksvknqpsskptlvtf*lfqk*svlslvsttvkfsiklklnqk*lvt
tlvnshshtrvstmvvqvlvlltlqdssh*srffiyll*lcfkiik**sykq****kkkk
kxkxxxxxxxxxxxxxkxfffffx---


Frame B:
fffhphnv*tnqkayfqkvhilwcclresp*lkgrtinfiiemscs*kvkt*npnqtrql
lkemqslksrrypsr*ktsprqnprs*hfncsrndrfchwylqr*sfqss*s*trndwsl
hw*iltliqecqpwssrywcyslfkihpievdflyiscsfvlk**sdkvinssnsrkrkk
kxxkxxxxxxxxxxxxxxffffx---


Frame C:
FSFIHIMSEQIKKRTFKKFTYSGVALESLLDLKEEQLISLLRCRARRKLRRETPIKHVNF
LKKCRASKAAVTQVGEKPALVKTHARNILIVPEMIGSVIGIYNGKVFNQVEVKPEMIGHY
TGEFSLSYKSVNHGRPGIGATHSSRFIPLK*ifyislvalf*nnkvikl*tvvivekekk
xkxkxxxxxxxxxxxkxxffffx---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFM738 (VFM738Q) /CSM/VF/VFM7-B/VFM738Q.Seq.d/ 1047 0.0
FC-AM19 (FC-AM19Q) /CSM/FC/FC-AM/FC-AM19Q.Seq.d/ 1017 0.0
FC-230 (FC-230Q) /CSM/CG/CG-FC/FC-230Q.Seq.d/ 1017 0.0
VSF361 (VSF361Q) /CSM/VS/VSF3-C/VSF361Q.Seq.d/ 1003 0.0
VSA505 (VSA505Q) /CSM/VS/VSA5-A/VSA505Q.Seq.d/ 1001 0.0
VSB707 (VSB707Q) /CSM/VS/VSB7-A/VSB707Q.Seq.d/ 999 0.0
VSF290 (VSF290Q) /CSM/VS/VSF2-D/VSF290Q.Seq.d/ 995 0.0
VSE589 (VSE589Q) /CSM/VS/VSE5-D/VSE589Q.Seq.d/ 995 0.0
VSE495 (VSE495Q) /CSM/VS/VSE4-D/VSE495Q.Seq.d/ 995 0.0
VSE759 (VSE759Q) /CSM/VS/VSE7-C/VSE759Q.Seq.d/ 985 0.0

own update 2004.12.24
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ416428) Dictyostelium discoideum cDNA clone:ddv26l09, 5' ... 1047 0.0 1
(C23668) Dictyostelium discoideum gamete cDNA, clone FC-AM19. 1017 0.0 1
(AU265111) Dictyostelium discoideum vegetative cDNA clone:VS... 1003 0.0 1
(AU261524) Dictyostelium discoideum vegetative cDNA clone:VS... 1001 0.0 1
(AU265002) Dictyostelium discoideum vegetative cDNA clone:VS... 995 0.0 1
(AU263147) Dictyostelium discoideum vegetative cDNA clone:VS... 995 0.0 1
(AU262188) Dictyostelium discoideum vegetative cDNA clone:VS... 910 0.0 2
(AU263221) Dictyostelium discoideum vegetative cDNA clone:VS... 906 0.0 2
(AU263354) Dictyostelium discoideum vegetative cDNA clone:VS... 985 0.0 1
(AU262544) Dictyostelium discoideum vegetative cDNA clone:VS... 983 0.0 1
dna update 2009. 4.24
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AY741683_1(AY741683|pid:none) Aedes aegypti 40S ribosomal protei... 171 2e-41
EU195429_1(EU195429|pid:none) Mucor racemosus strain PTCC 5305 p... 170 3e-41
AM048956_1(AM048956|pid:none) Eucinetus sp. APV-2005 mRNA for ri... 168 1e-40
AY620991_1(AY620991|pid:none) Branchiostoma belcheri tsingtaunes... 167 2e-40
AM048967_1(AM048967|pid:none) Scarabaeus laticollis mRNA for rib... 167 3e-40
AF526224_1(AF526224|pid:none) Argopecten irradians isolate iolsa... 166 4e-40
AY561511_1(AY561511|pid:none) Danio rerio ribosomal protein S15 ... 166 5e-40
AY961526_1(AY961526|pid:none) Lysiphlebus testaceipes ribosomal ... 166 5e-40
AF400212_1(AF400212|pid:none) Spodoptera frugiperda ribosomal pr... 166 6e-40
EF207951_1(EF207951|pid:none) Heliconius melpomene ribosomal pro... 166 6e-40
protein update 2009. 6.24
PSORT

psg: 0.75 gvh: 0.37 alm: 0.38 top: 0.53 tms: 0.00 mit: 0.25 mip: 0.04
nuc: 0.06 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: cytoplasmic
40.0 %: nuclear
4.0 %: mitochondrial
4.0 %: plasma membrane
4.0 %: vesicles of secretory system

>> prediction for VFM738 is cyt

5' end seq. ID VFM738F
5' end seq.
>VFM738F.Seq
CTTTTTCTTTCATCCACATAATGTCTGAACAAATCAAAAAGCGTACTTTCAAAAAGTTCA
CATACTCTGGTGTTGCCTTAGAGAGTCTCCTTGACTTAAAGGAAGAACAATTAATTTCAT
TATTGAGATGTCGTGCTCGTAGAAAGTTAAGACGTGAAACCCCAATCAAACACGTCAACT
TCTTAAAGAAATGCAGAGCCTCAAAAGCCGCCGTTACCCAAGTCGGTGAAAAACCAGCCC
TCGTCAAAACCCACGCTCGTAACATTTTAATTGTTCCAGAAATGATCGGTTCTGTCATTG
GTATCTACAACGGTAAAGTTTTCAATCAAGTTGAAGTTAAACCAGAAATGATTGGTCACT
ACACTGGTGAATTCTCACTCTCATACAAGAGTGTCAACCATGGTCGTCCAGGTATTGGTG
CTACTCACTCTTCAAGATTCATCCCATTGAAGTAGATTTTTTATATATCTCTTGTAGCTT
TGTTTTAAAATAATAAAGTGATAAAGTTATAAACAGTAGTAATAGTAGAAAAAGAAAAAA
AAAANAAAANAAAANNNNNNNANNNNANNNNNNNNNANNNNAANANNAAAANNNTTTTTT
TTTTTTTTTNAAANNNNNNNNNN
Length of 5' end seq. 623
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -