NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFN194
Library AF
(Link to library)
Clone ID AFN194
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID AFN194P
(Link to Original site)
Representative DNA sequence 
>AFN194 (AFN194Q) /CSM/AF/AFN1-D/AFN194Q.Seq.d/
ATTTTTTATTTTAATACAATAATACTTAATTAAAAAGAGAATGTTAAGAGCAGGTAAAAA
AACAAATAGCCAAACATCTACATCAAATGATGCTTGTAGTTTATTATATATAAATGTTCC
AGATTTCAATTGCAATATGTCGCAAATTGAAAACTATTGTATAGATAGATTTAATTTATT
AAATGAGGTATCAAAATTAAAAGATACACTTTCAGCACAAAAATCCAATACAAGTAAGGA
TAATGAAGATTTTCGTAATTTATCAAGCAGATTTTTAGGCTCAACTAAAGATGAACAATT
TAAGATTAAAGATGAATTATCACATTATTGTCTTAGATTGGCAATGTGTGACTCGACTGA
TAGGAATTGGTTTATCACAACAGAGTCAATATTATTAGCAAATAGATTAAATCAATCAGA
TTTAACAACAATAATATCATCATTCAAAGGATTTGGTTGGTCACCAGTTTCACAAGAAGA
ATATGAACAATATCAAGATGATTTAGGTTATTTAGTAAAGAAGGCAAATTTAAATTTAAA
TGAAGTAAATAATACTCATTTCTATAAATTACCATTTCAAGATATACCAAAATTAATTGA
TACAAAGAXXXXXXXXXXGTTAATTCAATTCTTTACAACCTTACCAAAAGCAGGTGATGG
TACAAATAAACCACAACTTGGAAATACCAAACATATTAGAAAGGAAGATGTATCACCATT
ATCAAAGACATCTTTCCCAATGTGTATGAGGGTAATGTATGATTCATTGGTTGAGACTAG
TTCACTTAAATATGAAGGTCGTTTACAATTTGGAACTTTTTTAAAGGGTATTGGTTTACC
CTATGATGAAGCTATCAACTTTTGGAGAATTGCCTTCTCAAAGAGAGTTTCAAACACTGA
TTTCGATAAGGAATATCTTTATAACATTCGTCATAACTATGGGTTAGAAGGTAAATCCAC
AAATTATTCACCATACTCTTGTCCTAGAATCATCTCAAAATCACCTCACAATGGTGATAA
GCTAGTTCATGGTTGTCCTTATATACAAAGTTTAGAGAGATTGGAACAAAAACTCTTGGA
TTTAGGTATTGATGATTTCCAAAGAATTCAAATCCTTGAAGCAACCAAAACTTCTCCAAA
TGTAGCTTGTACAAAACATTTCAATTTTCTTCATCCAAATAATACTTTAACAAAATTAAT
TAATCATCCAAATCAATTCTATGATCAAAGTATGGAATATTATAAAACTTTAGAAGAAAA
GAAATCTGCAAAACAATCAAACAATAAAGAAAANAAAATCAATCAAT
sequence update 2009. 4. 3
Translated Amino Acid sequence 
ffiliq*YLIKKRMLRAGKKTNSQTSTSNDACSLLYINVPDFNCNMSQIENYCIDRFNLL
NEVSKLKDTLSAQKSNTSKDNEDFRNLSSRFLGSTKDEQFKIKDELSHYCLRLAMCDSTD
RNWFITTESILLANRLNQSDLTTIISSFKGFGWSPVSQEEYEQYQDDLGYLVKKANLNLN
EVNNTHFYKLPFQDIPKLIDTK---

---LIQFFTTLPKAGDGTNKPQLGNTKHIRKEDVSPLSKTSFPMCMRVMYDSLVETSSLK
YEGRLQFGTFLKGIGLPYDEAINFWRIAFSKRVSNTDFDKEYLYNIRHNYGLEGKSTNYS
PYSCPRIISKSPHNGDKLVHGCPYIQSLERLEQKLLDLGIDDFQRIQILEATKTSPNVAC
TKHFNFLHPNNTLTKLINHPNQFYDQSMEYYKTLEEKKSAKQSNNKEXKINQ
Translated Amino Acid sequence (All Frames) 
Frame A:
ifyfntiiln*kenvksr*knk*pniyik*cl*fiiykcsrfqlqyvan*kllyr*i*fi
k*gikikrytfstkiqyk*g**rfs*fikqifrln*r*ti*d*r*iitlls*ignv*ld*
*elvyhnrvniisk*iksirfnnnniiiqriwlvtsftrri*tisr*frlfskegkfkfk
*sk*ysfl*itisrytkin*yk---

---vnsilynltksr*wyk*tttwkyqty*kgrcitiikdifpnvyegnv*fig*d*ft*
i*rsftiwnffkgywftl**syqllencllkesfkh*fr*gisl*hss*lwvrr*ihklf
tills*nhlkitsqw**asswlslytkfreigtktlgfry**fpknsnp*snqnfskcsl
yktfqfsssk*yfnkin*ssksil*skygil*nfrrkeicktikq*rkxnqs

Frame B:
ffiliq*YLIKKRMLRAGKKTNSQTSTSNDACSLLYINVPDFNCNMSQIENYCIDRFNLL
NEVSKLKDTLSAQKSNTSKDNEDFRNLSSRFLGSTKDEQFKIKDELSHYCLRLAMCDSTD
RNWFITTESILLANRLNQSDLTTIISSFKGFGWSPVSQEEYEQYQDDLGYLVKKANLNLN
EVNNTHFYKLPFQDIPKLIDTK---

---LIQFFTTLPKAGDGTNKPQLGNTKHIRKEDVSPLSKTSFPMCMRVMYDSLVETSSLK
YEGRLQFGTFLKGIGLPYDEAINFWRIAFSKRVSNTDFDKEYLYNIRHNYGLEGKSTNYS
PYSCPRIISKSPHNGDKLVHGCPYIQSLERLEQKLLDLGIDDFQRIQILEATKTSPNVAC
TKHFNFLHPNNTLTKLINHPNQFYDQSMEYYKTLEEKKSAKQSNNKEXKINQ

Frame C:
flf*ynnt*lkrec*eqvkkqiakhlhqmmlvvyyi*mfqisiaicrklktiv*idliy*
mryqn*kihfqhknpiqvrimkifviyqadf*aqlkmnnlrlkmnyhiivldwqcvtrli
giglsqqsqyy*qid*inqi*qq*yhhskdlvghqfhkknmnnikmi*vi**rrqi*i*m
k*iilisinyhfkiyqn*liqr---

---*fnslqpyqkqvmvqinhnleipnilerkmyhhyqrhlsqcv*g*cmihwlrlvhln
mkvvynlelf*rvlvypmmklstfgelpsqrefqtlisirnifitfvitmg*kvnpqiih
htlvlessqnhltmvis*fmvvliykv*rdwnknswi*vlmiskefkslkqpkllqm*lv
qnisiffiqiil*qn*liiqinsmikvwniikl*kkrnlqnnqtikkxksin
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFN194 (AFN194Q) /CSM/AF/AFN1-D/AFN194Q.Seq.d/                       2377   0.0
SFB423 (SFB423Q) /CSM/SF/SFB4-A/SFB423Q.Seq.d/                       1243   0.0
SFK838 (SFK838Q) /CSM/SF/SFK8-B/SFK838Q.Seq.d/                       1233   0.0
SFG145 (SFG145Q) /CSM/SF/SFG1-B/SFG145Q.Seq.d/                       1231   0.0
SSE886 (SSE886Q) /CSM/SS/SSE8-D/SSE886Q.Seq.d/                       1207   0.0
AFF128 (AFF128Q) /CSM/AF/AFF1-B/AFF128Q.Seq.d/                       1203   0.0
AFH166 (AFH166Q) /CSM/AF/AFH1-C/AFH166Q.Seq.d/                       1199   0.0
SSK623 (SSK623Q) /CSM/SS/SSK6-A/SSK623Q.Seq.d/                       1053   0.0
AFF771 (AFF771Q) /CSM/AF/AFF7-C/AFF771Q.Seq.d/                       1013   0.0
SSC479 (SSC479Q) /CSM/SS/SSC4-D/SSC479Q.Seq.d/                        967   0.0
own update 2009. 4. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ347701) Dictyostelium discoideum cDNA clone:dda27k23, 3' ...  1237   0.0    1
(BJ398930) Dictyostelium discoideum cDNA clone:dds3n06, 3' e...  1229   0.0    1
(BJ401179) Dictyostelium discoideum cDNA clone:dds22l10, 3' ...  1219   0.0    1
(BJ400455) Dictyostelium discoideum cDNA clone:dds13i11, 3' ...  1215   0.0    1
(BJ340019) Dictyostelium discoideum cDNA clone:dda11g07, 3' ...  1189   0.0    1
(BJ342943) Dictyostelium discoideum cDNA clone:dda15c17, 3' ...  1156   0.0    2
(BJ330254) Dictyostelium discoideum cDNA clone:dda27k23, 5' ...  1082   0.0    2
(BJ323595) Dictyostelium discoideum cDNA clone:dda11g07, 5' ...  1082   0.0    2
(BJ391342) Dictyostelium discoideum cDNA clone:dds13i11, 5' ...  1080   0.0    3
(BJ387532) Dictyostelium discoideum cDNA clone:dds3n06, 5' e...  1074   0.0    2
dna update 2009. 4.16
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q55BM5) RecName: Full=DNA primase large subunit;          EC=2....   824   0.0
AK228152_1(AK228152|pid:none) Arabidopsis thaliana mRNA for hypo...   196   1e-48
BT045358_1(BT045358|pid:none) Salmo salar clone ssal-rgf-519-075...   192   2e-47
AC144644_16(AC144644|pid:none) Medicago truncatula clone mth2-14...   190   8e-47
AK101812_1(AK101812|pid:none) Oryza sativa Japonica Group cDNA c...   187   5e-46
AY398398_1(AY398398|pid:none) Danio rerio clone RK137A2F09 prima...   185   3e-45
CR792449_1(CR792449|pid:none) Zebrafish DNA sequence from clone ...   184   4e-45
S45631(S45631) DNA primase chain p58 - human  &X74331_1(X74331|p...   183   1e-44
BT066804_1(BT066804|pid:none) Zea mays full-length cDNA clone ZM...   182   3e-44
(P49643) RecName: Full=DNA primase large subunit;          EC=2....   181   4e-44
protein update 2009. 4. 6
PSORT 

 psg: 0.00  gvh: 0.00  alm: 0.00  top: 0.00  tms: 0.00  mit: 0.00  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	100.0 %: 

>> prediction for AFN194 is

5' end seq. ID AFN194F
5' end seq. 
>AFN194F.Seq
ATTTTTTATTTTAATACAATAATACTTAATTAAAAAGAGAATGTTAAGAGCAGGTAAAAA
AACAAATAGCCAAACATCTACATCAAATGATGCTTGTAGTTTATTATATATAAATGTTCC
AGATTTCAATTGCAATATGTCGCAAATTGAAAACTATTGTATAGATAGATTTAATTTATT
AAATGAGGTATCAAAATTAAAAGATACACTTTCAGCACAAAAATCCAATACAAGTAAGGA
TAATGAAGATTTTCGTAATTTATCAAGCAGATTTTTAGGCTCAACTAAAGATGAACAATT
TAAGATTAAAGATGAATTATCACATTATTGTCTTAGATTGGCAATGTGTGACTCGACTGA
TAGGAATTGGTTTATCACAACAGAGTCAATATTATTAGCAAATAGATTAAATCAATCAGA
TTTAACAACAATAATATCATCATTCAAAGGATTTGGTTGGTCACCAGTTTCACAAGAAGA
ATATGAACAATATCAAGATGATTTAGGTTATTTAGTAAAGAAGGCAAATTTAAATTTAAA
TGAAGTAAATAATACTCATTTCTATAAATTACCATTTCAAGATATACCAAAATTAATTGA
TACAAAGAXXXXXXXXXX
Length of 5' end seq. 618
3' end seq. ID AFN194Z
3' end seq. 
>AFN194Z.Seq
XXXXXXXXXXGTTAATTCAATTCTTTACAACCTTACCAAAAGCAGGTGATGGTACAAATA
AACCACAACTTGGAAATACCAAACATATTAGAAAGGAAGATGTATCACCATTATCAAAGA
CATCTTTCCCAATGTGTATGAGGGTAATGTATGATTCATTGGTTGAGACTAGTTCACTTA
AATATGAAGGTCGTTTACAATTTGGAACTTTTTTAAAGGGTATTGGTTTACCCTATGATG
AAGCTATCAACTTTTGGAGAATTGCCTTCTCAAAGAGAGTTTCAAACACTGATTTCGATA
AGGAATATCTTTATAACATTCGTCATAACTATGGGTTAGAAGGTAAATCCACAAATTATT
CACCATACTCTTGTCCTAGAATCATCTCAAAATCACCTCACAATGGTGATAAGCTAGTTC
ATGGTTGTCCTTATATACAAAGTTTAGAGAGATTGGAACAAAAACTCTTGGATTTAGGTA
TTGATGATTTCCAAAGAATTCAAATCCTTGAAGCAACCAAAACTTCTCCAAATGTAGCTT
GTACAAAACATTTCAATTTTCTTCATCCAAATAATACTTTAACAAAATTAATTAATCATC
CAAATCAATTCTATGATCAAAGTATGGAATATTATAAAACTTTAGAAGAAAAGAAATCTG
CAAAACAATCAAACAATAAAGAAAANAAAATCAATCAAT
Length of 3' end seq. 699
Connected seq. ID AFN194P
Connected seq. 
>AFN194P.Seq
ATTTTTTATTTTAATACAATAATACTTAATTAAAAAGAGAATGTTAAGAGCAGGTAAAAA
AACAAATAGCCAAACATCTACATCAAATGATGCTTGTAGTTTATTATATATAAATGTTCC
AGATTTCAATTGCAATATGTCGCAAATTGAAAACTATTGTATAGATAGATTTAATTTATT
AAATGAGGTATCAAAATTAAAAGATACACTTTCAGCACAAAAATCCAATACAAGTAAGGA
TAATGAAGATTTTCGTAATTTATCAAGCAGATTTTTAGGCTCAACTAAAGATGAACAATT
TAAGATTAAAGATGAATTATCACATTATTGTCTTAGATTGGCAATGTGTGACTCGACTGA
TAGGAATTGGTTTATCACAACAGAGTCAATATTATTAGCAAATAGATTAAATCAATCAGA
TTTAACAACAATAATATCATCATTCAAAGGATTTGGTTGGTCACCAGTTTCACAAGAAGA
ATATGAACAATATCAAGATGATTTAGGTTATTTAGTAAAGAAGGCAAATTTAAATTTAAA
TGAAGTAAATAATACTCATTTCTATAAATTACCATTTCAAGATATACCAAAATTAATTGA
TACAAAGA----------GTTAATTCAATTCTTTACAACCTTACCAAAAGCAGGTGATGG
TACAAATAAACCACAACTTGGAAATACCAAACATATTAGAAAGGAAGATGTATCACCATT
ATCAAAGACATCTTTCCCAATGTGTATGAGGGTAATGTATGATTCATTGGTTGAGACTAG
TTCACTTAAATATGAAGGTCGTTTACAATTTGGAACTTTTTTAAAGGGTATTGGTTTACC
CTATGATGAAGCTATCAACTTTTGGAGAATTGCCTTCTCAAAGAGAGTTTCAAACACTGA
TTTCGATAAGGAATATCTTTATAACATTCGTCATAACTATGGGTTAGAAGGTAAATCCAC
AAATTATTCACCATACTCTTGTCCTAGAATCATCTCAAAATCACCTCACAATGGTGATAA
GCTAGTTCATGGTTGTCCTTATATACAAAGTTTAGAGAGATTGGAACAAAAACTCTTGGA
TTTAGGTATTGATGATTTCCAAAGAATTCAAATCCTTGAAGCAACCAAAACTTCTCCAAA
TGTAGCTTGTACAAAACATTTCAATTTTCTTCATCCAAATAATACTTTAACAAAATTAAT
TAATCATCCAAATCAATTCTATGATCAAAGTATGGAATATTATAAAACTTTAGAAGAAAA
GAAATCTGCAAAACAATCAAACAATAAAGAAAANAAAATCAATCAAT
Length of connected seq. 1297
Full length Seq ID -
Full length Seq. -
Length of full length seq. -