VFM647
Library VF
(Link to library)
Clone ID VFM647
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16285-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>VFM647 (VFM647Q) /CSM/VF/VFM6-B/VFM647Q.Seq.d/
XXXXXXXXXXGNANNNNNNNNNNNNNNNNNNANGTNNNNAANNNNGGNTGNNANGGTGGT
NNNNNNNNNAATGNNTNNNNNTACATCATCAAAAANGNAGGTATNCAAACNNAAGCTACC
TATCCATACNNTGCTGTTGATGGAGAATGTAAATTTAACTCTGCNCAAGTTGGTGCTAAA
ATTTCATCTTTCACTATGGTTCCACAAAATGAAACTCAAATTGCTTCCTACTTATTCAAC
AATGGTCCATTAGCTATTGCAGCTGATGCTGAAGAATGGCAATTNTATATGGGAGGTGTT
TTCGATTTCCCATGTGGTCAAACTTTAGATCACGGTATCTTAATTGTTGGTTATGGTGCT
CAAGATACCATCGTCGGTAAAAATACTCCATACTGGATCATTAAAAACTCATGGGGTGCC
GATTGGGGTGAAGCTGGTTACTTAAAAGTTG
sequence update 2001.11.22
Translated Amino Acid sequence
---XXXXXXXVXXXGXXGGXXXNXXXYIIKXXGXQTXATYPYXAVDGECKFNSAQVGAKI
SSFTMVPQNETQIASYLFNNGPLAIAADAEEWQXYMGGVFDFPCGQTLDHGILIVGYGAQ
DTIVGKNTPYWIIKNSWGADWGEAGYLKV


Translated Amino Acid sequence (All Frames)
Frame A:
---xxxxxxxxxxxxxxxwxxxxxxxxhhqkxryxnxsylsixcc*wrm*i*lcxswc*n
fifhygstk*nsncflliqqwsisycs*c*rmaixygrcfrfpmwsnfrsrylncwlwcs
ryhrr*kysildh*klmgcrlg*swllks


Frame B:
---XXXXXXXVXXXGXXGGXXXNXXXYIIKXXGXQTXATYPYXAVDGECKFNSAQVGAKI
SSFTMVPQNETQIASYLFNNGPLAIAADAEEWQXYMGGVFDFPCGQTLDHGILIVGYGAQ
DTIVGKNTPYWIIKNSWGADWGEAGYLKV


Frame C:
---xxxxxxxxxxxxxxvvxxxmxxxtsskxxvxkxklpihtxllmenvnltlxklvlkf
hlslwfhkmklkllptystmvh*llqlmlkngnxiwevfsishvvkl*itvs*llvmvlk
ipssvkilhtgslkthgvpigvklvt*kl


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFO892 (VFO892Q) /CSM/VF/VFO8-D/VFO892Q.Seq.d/ 680 0.0
VFO806 (VFO806Q) /CSM/VF/VFO8-A/VFO806Q.Seq.d/ 680 0.0
VFO638 (VFO638Q) /CSM/VF/VFO6-B/VFO638Q.Seq.d/ 680 0.0
VFO290 (VFO290Q) /CSM/VF/VFO2-D/VFO290Q.Seq.d/ 680 0.0
VFO273 (VFO273Q) /CSM/VF/VFO2-D/VFO273Q.Seq.d/ 680 0.0
VFN663 (VFN663Q) /CSM/VF/VFN6-C/VFN663Q.Seq.d/ 680 0.0
VFN529 (VFN529Q) /CSM/VF/VFN5-B/VFN529Q.Seq.d/ 680 0.0
VFN261 (VFN261Q) /CSM/VF/VFN2-C/VFN261Q.Seq.d/ 680 0.0
VFN103 (VFN103Q) /CSM/VF/VFN1-A/VFN103Q.Seq.d/ 680 0.0
VFM871 (VFM871Q) /CSM/VF/VFM8-C/VFM871Q.Seq.d/ 680 0.0

own update 2004. 5.21
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BG523152|BG523152.1 29-47 Stevia field grown leaf cDNA Stevia rebaudiana cDNA 5', mRNA sequence. 60 2e-05 1
BG525215|BG525215.1 45-7 Stevia field grown leaf cDNA Stevia rebaudiana cDNA 5', mRNA sequence. 60 2e-05 1
BG524692|BG524692.1 6-13 Stevia field grown leaf cDNA Stevia rebaudiana cDNA 5', mRNA sequence. 60 2e-05 1
BG524924|BG524924.1 1-26 Stevia field grown leaf cDNA Stevia rebaudiana cDNA 5', mRNA sequence. 60 2e-05 1
BG524136|BG524136.1 39-26 Stevia field grown leaf cDNA Stevia rebaudiana cDNA 5', mRNA sequence. 60 2e-05 1
U72746|U72746.1 Dictyostelium discoideum cysteine proteinase (cprG) mRNA, complete cds. 46 6e-04 2
L36204|L36204.1 Dictyostelium discoideum cysteine proteinase (CP4) mRNA, complete cds. 46 0.001 3
CB929185|CB929185.1 ABA1_40_F05.b1_A012 Abscisic acid-treated seedlings Sorghum bicolor cDNA clone ABA1_40_F05_A012 3', mRNA sequence. 50 0.023 1
BE610915|BE610915.1 sq68c07.y1 Gm-c1048 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1048-613 5' similar to TR:Q96454 Q96454 THIOL PROTEASE ISOFORM B ;, mRNA sequence. 44 0.026 2
BQ514757|BQ514757.1 EST622172 Generation of a set of potato cDNA clones for microarray analyses mixed potato tissues Solanum tuberosum cDNA clone STMIN86 3' end, mRNA sequence. 42 0.060 2
dna update 2003. 7.18
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P04988) RecName: Full=Cysteine proteinase 1; EC=3.4.22... 183 1e-45
U42758_1(U42758|pid:none) Naegleria fowleri cysteine proteinase ... 134 7e-31
AB270920_1(AB270920|pid:none) Phaseolus vulgaris CP2 gene for cy... 132 4e-30
T12040(T12040) cysteine proteinase (EC 3.4.22.-) 2 precursor - k... 129 2e-29
AL663007_3(AL663007|pid:none) Oryza sativa genomic DNA, chromoso... 129 4e-29
FB844544_1(FB844544|pid:none) Sequence 63817 from Patent WO20080... 127 9e-29
AF167986_1(AF167986|pid:none) Glycine max putative cysteine prot... 127 9e-29
BT041678_1(BT041678|pid:none) Zea mays full-length cDNA clone ZM... 127 1e-28
AF411121_1(AF411121|pid:none) Sandersonia aurantiaca cysteine pr... 127 1e-28
FB844670_1(FB844670|pid:none) Sequence 63943 from Patent WO20080... 127 1e-28
protein update 2009. 4.19
PSORT

psg: 0.80 gvh: 0.36 alm: 0.45 top: 0.53 tms: 0.00 mit: 0.17 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: nuclear
32.0 %: cytoplasmic
24.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: peroxisomal

>> prediction for VFM647 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VFM647Z
3' end seq.
>VFM647Z.Seq
NNNNNNNNNNGNANNNNNNNNNNNNNNNNNNANGTNNNNAANNNNGGNTGNNANGGTGGT
NNNNNNNNNAATGNNTNNNNNTACATCATCAAAAANGNAGGTATNCAAACNNAAGCTACC
TATCCATACNNTGCTGTTGATGGAGAATGTAAATTTAACTCTGCNCAAGTTGGTGCTAAA
ATTTCATCTTTCACTATGGTTCCACAAAATGAAACTCAAATTGCTTCCTACTTATTCAAC
AATGGTCCATTAGCTATTGCAGCTGATGCTGAAGAATGGCAATTNTATATGGGAGGTGTT
TTCGATTTCCCATGTGGTCAAACTTTAGATCACGGTATCTTAATTGTTGGTTATGGTGCT
CAAGATACCATCGTCGGTAAAAATACTCCATACTGGATCATTAAAAACTCATGGGGTGCC
GATTGGGGTGAAGCTGGTTACTTAAAAGTTG
Length of 3' end seq. 451
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -