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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFN193
Library AF
(Link to library)
Clone ID AFN193
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID AFN193P
(Link to Original site)
Representative DNA sequence 
>AFN193 (AFN193Q) /CSM/AF/AFN1-D/AFN193Q.Seq.d/
TTTCATTTATTAATAATACATCCACAAAGAATGAAAATATTATTATTTGTTACATTAATT
GCATTGGCATTTGTTGCCTTATGCTCAGCAGAAGGAAATGTTGTGTGTTTTATCACCAGA
CAACTTTGATACAGTTGTTGATGGTTCAAAAACTGTATTTGTAAAATTCTATGCACCATG
GTGTGGCCATTGTAAAAAACTTGCACCAGATTTTGAAATCCTTGCTGACACATTCGCACC
AGTTTCCAACAAAGTTGTAATTGCCAAAGTTGATTGTGACCAAGCTGACAACAAAGCTCT
CTGTAGTAAATATGATGTTTCTGGTTATCCAACCCTCAAAATCTTTGACAAATCAACCAC
TGCCAAAGATTACAACGGTGCTAGATCAGTTGATGAATTATTAACTTATATCAATAATCA
CGCCAAAACCAACGTTAAAGTAAAGAAAGCACCATCAAATGTTGTTGATTTATCACCATC
AAATTTTGATTCAGTTGTTTTAGATAAATCAAAGAATGTTTTAGTTGAATTCTATGCACC
ATGGTGTGGTCATTGCAAAAAGTTAATGCCAGATTATGAAATCCTTGGTAACACCTACGC
CAATGAAAAAGATGTTGTCATCGCCAAAATTGATTGCGATGCTGCTGATAACAAAGCCAT
CTGCTNCAAATATGGNGTCACTGGNTTNCCAACACTCAAAXXXXXXXXXXCATCAAATTT
TGATTCAGTTGTTTTAGATAAATCAAAGAATGTTTTAGTTGAATTCTATGCACCATGGTG
TGGTCANTGCAAAAAGTTAATGCCAGATTATGAAATCCTTGGTAACACNTACGCCAATGA
AAAAGATGTTGTCATCGCCAAAATTGATTGCGATGCTGCTGATAACAAAGCCATCTGCTC
CAAATATGGTGTCACTGGTTTCCCAACACTCAAATGGTTCGGTAAACAAAGCAAAGACGG
TGAAAAATATGAACAAGGTCGTGATCTTGATACTTTCATCAACTACATCAACAAACAAGC
TGGTGTTAACCGTGTCAAAGGTGGTAAACTCGCTGTTGGTGCTGGTCGTGTTGAACAACT
CGATACTATTGCCACTGAATTCATCGCTGCCGCTGCTGAAGTCCGTAAGGAACTCGTCAA
GAAAGCTCAAACCGTCGTTGATTCTCTCCCAGAAGAATTAAGAACTGAAGGTTCATACTA
CGTCAAAGTCATGAAAACCATTGCTGAAAAATCAATCGATTTTGTAACCACTGAAATCGC
TCGTATCACCAAATTAGTCTCTGGTTCAATGTCTGGAAAGAAAGCTGATGAATTTGCCAA
GAAACTCAATATTTTAGAATCTTTCAAATCAAAATAAATTAAATTTAATTTAGAAAATAA
GAAAATAAAATAAAAGAAAAAAAATAAAATATAAAATAAAATTTTAAAAAAA
sequence update 2009. 4. 3
Translated Amino Acid sequence 
fiy**yihke*kyyyllh*LHWHLLPYAQQKEMLCVLSPDNFDTVVDGSKTVFVKFYAPW
CGHCKKLAPDFEILADTFAPVSNKVVIAKVDCDQADNKALCSKYDVSGYPTLKIFDKSTT
AKDYNGARSVDELLTYINNHAKTNVKVKKAPSNVVDLSPSNFDSVVLDKSKNVLVEFYAP
WCGHCKKLMPDYEILGNTYANEKDVVIAKIDCDAADNKAICXKYGVTGXPTLK---

---SNFDSVVLDKSKNVLVEFYAPWCGXCKKLMPDYEILGNTYANEKDVVIAKIDCDAAD
NKAICSKYGVTGFPTLKWFGKQSKDGEKYEQGRDLDTFINYINKQAGVNRVKGGKLAVGA
GRVEQLDTIATEFIAAAAEVRKELVKKAQTVVDSLPEELRTEGSYYVKVMKTIAEKSIDF
VTTEIARITKLVSGSMSGKKADEFAKKLNILESFKSK*ikfnlenkkik*kkknki*nki
lkk
Translated Amino Acid sequence (All Frames) 
Frame A:
fhlliihpqrmkillfvtlialafvalcsaegnvvcfitrql*ysc*wfkncickilctm
vwpl*ktctrf*npc*hirtsfqqscncqs*l*ps*qqssl**i*cfwlsnpqnl*qinh
cqrlqrc*is**iinlyq*srqnqr*skestikcc*fitikf*fscfr*ikecfs*ilct
mvwslqkvnarl*npw*hlrq*krcchrqn*lrcc**qshllqiwxhwxxntq---

---hqiliqlf*inqrmf*lnsmhhgvvxaks*cqimkslvtxtpmkkmlsspkliamll
itkpsapnmvslvsqhsngsvnkaktvknmnkvvililssttstnklvltvskvvnsllv
lvvlnnsillplnsslpllksvrnssrklkpslilsqkn*elkvhttsks*kpllknqsi
l*plkslvspn*slvqclerklmnlprnsif*nlsnqnklnli*kirk*nkrkkikykik
f*k

Frame B:
fiy**yihke*kyyyllh*LHWHLLPYAQQKEMLCVLSPDNFDTVVDGSKTVFVKFYAPW
CGHCKKLAPDFEILADTFAPVSNKVVIAKVDCDQADNKALCSKYDVSGYPTLKIFDKSTT
AKDYNGARSVDELLTYINNHAKTNVKVKKAPSNVVDLSPSNFDSVVLDKSKNVLVEFYAP
WCGHCKKLMPDYEILGNTYANEKDVVIAKIDCDAADNKAICXKYGVTGXPTLK---

---ikf*fscfr*ikecfs*ilctmvwsxqkvnarl*npw*hxrq*krcchrqn*lrcc*
*qshllqiwchwfpntqmvr*tkqrr*ki*trs*s*yfhqlhqqtswc*pcqrw*trcwc
wsc*ttryych*ihrcrc*sp*gtrqessnrr*fsprrikn*rfilrqshenhc*kinrf
cnh*nrsyhqislwfnvwkes**icqetqyfrifqikin*i*frk*enkikekk*nik*n
fkk

Frame C:
sfinntstkneniiicyincigicclmlsrrkccvfyhqttliqllmvqklyl*nsmhhg
vaivknlhqilksllthshqfptkl*lpklivtklttklsvvnmmflviqpsksltnqpl
pkittvldqlmny*lisiitpkptlk*rkhhqmlliyhhqiliqlf*inqrmf*lnsmhh
gvviaks*cqimkslvtptpmkkmlsspkliamllitkpsaxnmxslxxqhs---

---SNFDSVVLDKSKNVLVEFYAPWCGXCKKLMPDYEILGNTYANEKDVVIAKIDCDAAD
NKAICSKYGVTGFPTLKWFGKQSKDGEKYEQGRDLDTFINYINKQAGVNRVKGGKLAVGA
GRVEQLDTIATEFIAAAAEVRKELVKKAQTVVDSLPEELRTEGSYYVKVMKTIAEKSIDF
VTTEIARITKLVSGSMSGKKADEFAKKLNILESFKSK*ikfnlenkkik*kkknki*nki
lkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFN193 (AFN193Q) /CSM/AF/AFN1-D/AFN193Q.Seq.d/                       2571   0.0
VFI769 (VFI769Q) /CSM/VF/VFI7-C/VFI769Q.Seq.d/                       1348   0.0
VFF762 (VFF762Q) /CSM/VF/VFF7-C/VFF762Q.Seq.d/                       1348   0.0
VFF615 (VFF615Q) /CSM/VF/VFF6-A/VFF615Q.Seq.d/                       1348   0.0
VFD262 (VFD262Q) /CSM/VF/VFD2-C/VFD262Q.Seq.d/                       1348   0.0
SFI534 (SFI534Q) /CSM/SF/SFI5-B/SFI534Q.Seq.d/                       1348   0.0
SFC595 (SFC595Q) /CSM/SF/SFC5-D/SFC595Q.Seq.d/                       1348   0.0
CFF448 (CFF448Q) /CSM/CF/CFF4-B/CFF448Q.Seq.d/                       1348   0.0
CFD722 (CFD722Q) /CSM/CF/CFD7-A/CFD722Q.Seq.d/                       1348   0.0
AHB158 (AHB158Q) /CSM/AH/AHB1-C/AHB158Q.Seq.d/                       1348   0.0
own update 2009. 4. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ330244) Dictyostelium discoideum cDNA clone:dda27i23, 5' ...  1364   0.0    1
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720...  1211   0.0    1
(BJ436145) Dictyostelium discoideum cDNA clone:ddv30j06, 3' ...  1211   0.0    1
(BJ435983) Dictyostelium discoideum cDNA clone:ddv29a12, 3' ...  1211   0.0    1
(BJ435573) Dictyostelium discoideum cDNA clone:ddv27f15, 3' ...  1211   0.0    1
(BJ435442) Dictyostelium discoideum cDNA clone:ddv27k02, 3' ...  1211   0.0    1
(BJ435358) Dictyostelium discoideum cDNA clone:ddv26k19, 3' ...  1211   0.0    1
(BJ435186) Dictyostelium discoideum cDNA clone:ddv26i09, 3' ...  1211   0.0    1
(BJ434954) Dictyostelium discoideum cDNA clone:ddv25e13, 3' ...  1211   0.0    1
(BJ434338) Dictyostelium discoideum cDNA clone:ddv16g18, 3' ...  1211   0.0    1
dna update 2009. 4.16
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q86IA3) RecName: Full=Protein disulfide-isomerase 1;          S...   488   e-136
AF019112_1(AF019112|pid:none) Dictyostelium discoideum protein d...   486   e-136
EF086125_1(EF086125|pid:none) Picea sitchensis clone WS0285_I21 ...   254   5e-66
AY730725_1(AY730725|pid:none) Entamoeba histolytica protein disu...   246   1e-63
(O22263) RecName: Full=Probable protein disulfide-isomerase A6; ...   242   2e-62
DQ222488_1(DQ222488|pid:none) Solanum tuberosum clone 098B03 dis...   238   3e-61
AY739288_1(AY739288|pid:none) Zea mays protein disulfide isomera...   238   4e-61
EU966127_1(EU966127|pid:none) Zea mays clone 291908 PDIL2-2 - Ze...   238   4e-61
AC087425_4(AC087425|pid:none) Oryza sativa (japonica cultivar-gr...   238   5e-61
AE017341_67(AE017341|pid:none) Cryptococcus neoformans var. neof...   237   8e-61
protein update 2009. 4. 6
PSORT 

 psg: 0.00  gvh: 0.00  alm: 0.00  top: 0.00  tms: 0.00  mit: 0.00  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	100.0 %: 

>> prediction for AFN193 is

5' end seq. ID AFN193F
5' end seq. 
>AFN193F.Seq
TTTCATTTATTAATAATACATCCACAAAGAATGAAAATATTATTATTTGTTACATTAATT
GCATTGGCATTTGTTGCCTTATGCTCAGCAGAAGGAAATGTTGTGTGTTTTATCACCAGA
CAACTTTGATACAGTTGTTGATGGTTCAAAAACTGTATTTGTAAAATTCTATGCACCATG
GTGTGGCCATTGTAAAAAACTTGCACCAGATTTTGAAATCCTTGCTGACACATTCGCACC
AGTTTCCAACAAAGTTGTAATTGCCAAAGTTGATTGTGACCAAGCTGACAACAAAGCTCT
CTGTAGTAAATATGATGTTTCTGGTTATCCAACCCTCAAAATCTTTGACAAATCAACCAC
TGCCAAAGATTACAACGGTGCTAGATCAGTTGATGAATTATTAACTTATATCAATAATCA
CGCCAAAACCAACGTTAAAGTAAAGAAAGCACCATCAAATGTTGTTGATTTATCACCATC
AAATTTTGATTCAGTTGTTTTAGATAAATCAAAGAATGTTTTAGTTGAATTCTATGCACC
ATGGTGTGGTCATTGCAAAAAGTTAATGCCAGATTATGAAATCCTTGGTAACACCTACGC
CAATGAAAAAGATGTTGTCATCGCCAAAATTGATTGCGATGCTGCTGATAACAAAGCCAT
CTGCTNCAAATATGGNGTCACTGGNTTNCCAACACTCAAAXXXXXXXXXX
Length of 5' end seq. 710
3' end seq. ID AFN193Z
3' end seq. 
>AFN193Z.Seq
XXXXXXXXXXCATCAAATTTTGATTCAGTTGTTTTAGATAAATCAAAGAATGTTTTAGTT
GAATTCTATGCACCATGGTGTGGTCANTGCAAAAAGTTAATGCCAGATTATGAAATCCTT
GGTAACACNTACGCCAATGAAAAAGATGTTGTCATCGCCAAAATTGATTGCGATGCTGCT
GATAACAAAGCCATCTGCTCCAAATATGGTGTCACTGGTTTCCCAACACTCAAATGGTTC
GGTAAACAAAGCAAAGACGGTGAAAAATATGAACAAGGTCGTGATCTTGATACTTTCATC
AACTACATCAACAAACAAGCTGGTGTTAACCGTGTCAAAGGTGGTAAACTCGCTGTTGGT
GCTGGTCGTGTTGAACAACTCGATACTATTGCCACTGAATTCATCGCTGCCGCTGCTGAA
GTCCGTAAGGAACTCGTCAAGAAAGCTCAAACCGTCGTTGATTCTCTCCCAGAAGAATTA
AGAACTGAAGGTTCATACTACGTCAAAGTCATGAAAACCATTGCTGAAAAATCAATCGAT
TTTGTAACCACTGAAATCGCTCGTATCACCAAATTAGTCTCTGGTTCAATGTCTGGAAAG
AAAGCTGATGAATTTGCCAAGAAACTCAATATTTTAGAATCTTTCAAATCAAAATAAATT
AAATTTAATTTAGAAAATAAGAAAATAAAATAAAAGAAAAAAAATAAAATATAAAATAAA
ATTTTAAAAAAA
Length of 3' end seq. 732
Connected seq. ID AFN193P
Connected seq. 
>AFN193P.Seq
TTTCATTTATTAATAATACATCCACAAAGAATGAAAATATTATTATTTGTTACATTAATT
GCATTGGCATTTGTTGCCTTATGCTCAGCAGAAGGAAATGTTGTGTGTTTTATCACCAGA
CAACTTTGATACAGTTGTTGATGGTTCAAAAACTGTATTTGTAAAATTCTATGCACCATG
GTGTGGCCATTGTAAAAAACTTGCACCAGATTTTGAAATCCTTGCTGACACATTCGCACC
AGTTTCCAACAAAGTTGTAATTGCCAAAGTTGATTGTGACCAAGCTGACAACAAAGCTCT
CTGTAGTAAATATGATGTTTCTGGTTATCCAACCCTCAAAATCTTTGACAAATCAACCAC
TGCCAAAGATTACAACGGTGCTAGATCAGTTGATGAATTATTAACTTATATCAATAATCA
CGCCAAAACCAACGTTAAAGTAAAGAAAGCACCATCAAATGTTGTTGATTTATCACCATC
AAATTTTGATTCAGTTGTTTTAGATAAATCAAAGAATGTTTTAGTTGAATTCTATGCACC
ATGGTGTGGTCATTGCAAAAAGTTAATGCCAGATTATGAAATCCTTGGTAACACCTACGC
CAATGAAAAAGATGTTGTCATCGCCAAAATTGATTGCGATGCTGCTGATAACAAAGCCAT
CTGCTNCAAATATGGNGTCACTGGNTTNCCAACACTCAAA----------CATCAAATTT
TGATTCAGTTGTTTTAGATAAATCAAAGAATGTTTTAGTTGAATTCTATGCACCATGGTG
TGGTCANTGCAAAAAGTTAATGCCAGATTATGAAATCCTTGGTAACACNTACGCCAATGA
AAAAGATGTTGTCATCGCCAAAATTGATTGCGATGCTGCTGATAACAAAGCCATCTGCTC
CAAATATGGTGTCACTGGTTTCCCAACACTCAAATGGTTCGGTAAACAAAGCAAAGACGG
TGAAAAATATGAACAAGGTCGTGATCTTGATACTTTCATCAACTACATCAACAAACAAGC
TGGTGTTAACCGTGTCAAAGGTGGTAAACTCGCTGTTGGTGCTGGTCGTGTTGAACAACT
CGATACTATTGCCACTGAATTCATCGCTGCCGCTGCTGAAGTCCGTAAGGAACTCGTCAA
GAAAGCTCAAACCGTCGTTGATTCTCTCCCAGAAGAATTAAGAACTGAAGGTTCATACTA
CGTCAAAGTCATGAAAACCATTGCTGAAAAATCAATCGATTTTGTAACCACTGAAATCGC
TCGTATCACCAAATTAGTCTCTGGTTCAATGTCTGGAAAGAAAGCTGATGAATTTGCCAA
GAAACTCAATATTTTAGAATCTTTCAAATCAAAATAAATTAAATTTAATTTAGAAAATAA
GAAAATAAAATAAAAGAAAAAAAATAAAATATAAAATAAAATTTTAAAAAAA
Length of connected seq. 1422
Full length Seq ID -
Full length Seq. -
Length of full length seq. -