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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFN192
Library AF
(Link to library)
Clone ID AFN192
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig -
Original site URL
Representative seq. ID AFN192P
(Link to Original site)
Representative DNA sequence 
>AFN192 (AFN192Q) /CSM/AF/AFN1-D/AFN192Q.Seq.d/
AATTTTTAATTCAAATAAATATAAATATATAATATACAAATAATGGTTAAAAGTAGAGAT
TCTGATTCCGATGATGATTTGGATGAGGAGTTATTTCAATTAACTGAAAAGAAATCAAAT
AAAAGAATTAAATCAAATGAATCAAGTGATGAAGATTTTGAAGAAAATAAAAATAAAAAA
AAGAAAACATCAGGACCAGGTAGAAAGAAAGGTTCAACATCAATGCAACAATCAACTATA
AACTATGGTAGTAGTCGTAGGAATAGAGGTGCATCAATTGAGAATGATGATGATTTTAAT
GATGGTTATGATGAAGATTTATATAAAGATGATAATGATAGATATGAACTTTCATTATTA
CCAGAAATTGATAGAGAAAATATATTATCAGAAAGATATGAAAAGAGAAAAGAAGCAAGA
GAACTTTGGTTACAACAAAAATCAATTAGAGATAGAGAAAAGAAATCTGGTTCACAAGTT
GACAATAAATTAAAATCACAATCATCAACTAGAGGACGTAGTGAAAAAGAGGATAGACAA
AGAGAAGCATTAAAAGATTTAXXXXXXXXXXCAAGAATATAGAACCATTTGTGAGAAAAT
TGAAGAGTTGACAAAGTTGGCAATAAGCATTAAAGAAGAGAATGTTTCAAAGGTTGATCA
ATTAATTCAAACCATTAATAAAAAGAATAAATCATTAAACTTTAAATATCAATCAACTAC
TCAAACTTCAACTGAACAAGTTTCAAATGAATTTGATCCATTTGCAAGAAGAAAAACTAG
AAATTGTGCTGTAGTTGCTGCTGATACTTCAAGTATAGTCATTTCACCAACCAATTNTAC
AACTCCAACTACTACCAGTCCAATTAATGCTACTTTATCACCATCTGNTCAATTTTTAGA
GAAATCAAAAAATTCAACTACCACCACTTCCACTAATGATTCTAATAATACTCGTTCNCT
TTATGACGNTCATAGATCAATCGATTTAAATATTCATATTCCTGATCATCCAAATAAAAT
TTTATCAATGCAACCAAAAAGGAAAAGACAAATCATTCCTGCAAATATTGTTAAAAATGA
TCATTCAATGTTTAAAAATATTTTATCATTAAATGAATATTTAATTAAAAGAGATTCAAT
GGTTCAATAAAATAAAATAATAAAAAAAATAAATAAAAAAAAAAGAATA
sequence update 2009. 4. 3
Translated Amino Acid sequence 
nf*fk*i*IYNIQIMVKSRDSDSDDDLDEELFQLTEKKSNKRIKSNESSDEDFEENKNKK
KKTSGPGRKKGSTSMQQSTINYGSSRRNRGASIENDDDFNDGYDEDLYKDDNDRYELSLL
PEIDRENILSERYEKRKEARELWLQQKSIRDREKKSGSQVDNKLKSQSSTRGRSEKEDRQ
REALKDL---

---QEYRTICEKIEELTKLAISIKEENVSKVDQLIQTINKKNKSLNFKYQSTTQTSTEQV
SNEFDPFARRKTRNCAVVAADTSSIVISPTNXTTPTTTSPINATLSPSXQFLEKSKNSTT
TTSTNDSNNTRSLYDXHRSIDLNIHIPDHPNKILSMQPKRKRQIIPANIVKNDHSMFKNI
LSLNEYLIKRDSMVQ*nkiikkinkkkri
Translated Amino Acid sequence (All Frames) 
Frame A:
nf*fk*i*IYNIQIMVKSRDSDSDDDLDEELFQLTEKKSNKRIKSNESSDEDFEENKNKK
KKTSGPGRKKGSTSMQQSTINYGSSRRNRGASIENDDDFNDGYDEDLYKDDNDRYELSLL
PEIDRENILSERYEKRKEARELWLQQKSIRDREKKSGSQVDNKLKSQSSTRGRSEKEDRQ
REALKDL---

---QEYRTICEKIEELTKLAISIKEENVSKVDQLIQTINKKNKSLNFKYQSTTQTSTEQV
SNEFDPFARRKTRNCAVVAADTSSIVISPTNXTTPTTTSPINATLSPSXQFLEKSKNSTT
TTSTNDSNNTRSLYDXHRSIDLNIHIPDHPNKILSMQPKRKRQIIPANIVKNDHSMFKNI
LSLNEYLIKRDSMVQ*nkiikkinkkkri

Frame B:
ifnsnkykyiiyk*wlkveilipmmiwmrsyfn*lkrnqikelnqmnqvmkilkkikikk
rkhqdqverkvqhqcnnql*tmvvvvgievhqlrmmmilmmvmmkiyikmimidmnfhyy
qkliekiyyqkdmkrekkqenfgynknqleiekrnlvhkltin*nhnhqledvvkkridk
ekh*ki---

---kniepfvrklks*qswq*alkkrmfqrlin*fkplikrinh*tlninqllklqlnkf
qmnlihlqeekleivl*lllilqv*sfhqpixqlqllpvqlmllyhhlxnf*rnqkiqlp
plplmiliilvxfmtxidqsi*ififliiqikfyqcnqkgkdksflqillkmiiqclkif
yh*mni*lkeiqwfnkik**kk*ikkke

Frame C:
fliqinini*ytnng*k*rf*fr**fg*gvisin*keik*kn*ik*ik**rf*rk*k*kk
enirtr*kerfninatinyklw**s*e*rcin*e***f**wl**rfi*r****i*tfiit
rn**rkyiirki*kekrskrtlvttkin*r*rkeiwfts*q*ikitiin*rt**krg*tk
rsikrf---

---ri*nhl*en*rvdkvgnkh*rrecfkg*sinsnh**ke*iikl*isinysnfn*tsf
k*i*sickkkn*klccscc*yfkyshftnqxynsnyyqsn*cyfitixsifreikkfnyh
hfh**f**ysfxl*rs*inrfkysys*ssk*nfinatkkektnhsckyc*k*sfnv*kyf
iik*ifn*krfngsik*nnkknk*kkkn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFN192 (AFN192Q) /CSM/AF/AFN1-D/AFN192Q.Seq.d/                       1501   0.0
SLB263 (SLB263Q) /CSM/SL/SLB2-C/SLB263Q.Seq.d/                       1114   0.0
CFG242 (CFG242Q) /CSM/CF/CFG2-B/CFG242Q.Seq.d/                       1021   0.0
AFC455 (AFC455Q) /CSM/AF/AFC4-C/AFC455Q.Seq.d/                       1017   0.0
VHB413 (VHB413Q) /CSM/VH/VHB4-A/VHB413Q.Seq.d/                        412   e-114
VSD381 (VSD381Q) /CSM/VS/VSD3-D/VSD381Q.Seq.d/                        305   8e-82
SFE477 (SFE477Q) /CSM/SF/SFE4-D/SFE477Q.Seq.d/                        236   6e-61
CHM651 (CHM651Q) /CSM/CH/CHM6-C/CHM651Q.Seq.d/                         40   0.076
VHO185 (VHO185Q) /CSM/VH/VHO1-D/VHO185Q.Seq.d/                         38   0.30
VHH496 (VHH496Q) /CSM/VH/VHH4-D/VHH496Q.Seq.d/                         38   0.30
own update 2009. 4. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU033644) Dictyostelium discoideum slug cDNA, clone SLB263.     1114   0.0    1
(BJ347679) Dictyostelium discoideum cDNA clone:dda27g23, 3' ...  1114   0.0    1
(BJ372592) Dictyostelium discoideum cDNA clone:ddc13c12, 3' ...  1017   0.0    1
(BJ341211) Dictyostelium discoideum cDNA clone:dda5n14, 3' e...   991   0.0    2
(BJ330236) Dictyostelium discoideum cDNA clone:dda27g23, 5' ...   274   e-145  4
(BJ359196) Dictyostelium discoideum cDNA clone:ddc13c12, 5' ...   274   e-145  4
(BJ437077) Dictyostelium discoideum cDNA clone:ddv33j04, 3' ...   210   4e-86  4
(AU263936) Dictyostelium discoideum vegetative cDNA clone:VS...   274   7e-69  1
(AU263937) Dictyostelium discoideum vegetative cDNA clone:VS...   264   7e-66  1
(BJ400349) Dictyostelium discoideum cDNA clone:dds9j20, 3' e...   170   8e-38  1
dna update 2009. 4.16
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P53064) RecName: Full=RNA polymerase-associated protein RTF1;  ...    41   0.090
AP006852_69(AP006852|pid:none) Candida albicans genomic DNA, chr...    40   0.12
BX908812_14(BX908812|pid:none) Neurospora crassa DNA linkage gro...    40   0.15
(Q9W261) RecName: Full=RNA polymerase-associated protein Rtf1;  ...    40   0.20
AE014188_244(AE014188|pid:none) Plasmodium falciparum 3D7 chromo...    40   0.20
BT031278_1(BT031278|pid:none) Drosophila melanogaster LP07508 fu...    40   0.20
BT066034_1(BT066034|pid:none) Zea mays full-length cDNA clone ZM...    40   0.20
EU960124_1(EU960124|pid:none) Zea mays clone 222001 RING finger ...    40   0.20
AL928674_10(AL928674|pid:none) Zebrafish DNA sequence from clone...    39   0.26
BC121746_1(BC121746|pid:none) Danio rerio similar to Apoptotic c...    39   0.26
protein update 2009. 4. 6
PSORT 

 psg: 0.00  gvh: 0.00  alm: 0.00  top: 0.00  tms: 0.00  mit: 0.00  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	100.0 %: 

>> prediction for AFN192 is

5' end seq. ID AFN192F
5' end seq. 
>AFN192F.Seq
AATTTTTAATTCAAATAAATATAAATATATAATATACAAATAATGGTTAAAAGTAGAGAT
TCTGATTCCGATGATGATTTGGATGAGGAGTTATTTCAATTAACTGAAAAGAAATCAAAT
AAAAGAATTAAATCAAATGAATCAAGTGATGAAGATTTTGAAGAAAATAAAAATAAAAAA
AAGAAAACATCAGGACCAGGTAGAAAGAAAGGTTCAACATCAATGCAACAATCAACTATA
AACTATGGTAGTAGTCGTAGGAATAGAGGTGCATCAATTGAGAATGATGATGATTTTAAT
GATGGTTATGATGAAGATTTATATAAAGATGATAATGATAGATATGAACTTTCATTATTA
CCAGAAATTGATAGAGAAAATATATTATCAGAAAGATATGAAAAGAGAAAAGAAGCAAGA
GAACTTTGGTTACAACAAAAATCAATTAGAGATAGAGAAAAGAAATCTGGTTCACAAGTT
GACAATAAATTAAAATCACAATCATCAACTAGAGGACGTAGTGAAAAAGAGGATAGACAA
AGAGAAGCATTAAAAGATTTAXXXXXXXXXX
Length of 5' end seq. 571
3' end seq. ID AFN192Z
3' end seq. 
>AFN192Z.Seq
XXXXXXXXXXCAAGAATATAGAACCATTTGTGAGAAAATTGAAGAGTTGACAAAGTTGGC
AATAAGCATTAAAGAAGAGAATGTTTCAAAGGTTGATCAATTAATTCAAACCATTAATAA
AAAGAATAAATCATTAAACTTTAAATATCAATCAACTACTCAAACTTCAACTGAACAAGT
TTCAAATGAATTTGATCCATTTGCAAGAAGAAAAACTAGAAATTGTGCTGTAGTTGCTGC
TGATACTTCAAGTATAGTCATTTCACCAACCAATTNTACAACTCCAACTACTACCAGTCC
AATTAATGCTACTTTATCACCATCTGNTCAATTTTTAGAGAAATCAAAAAATTCAACTAC
CACCACTTCCACTAATGATTCTAATAATACTCGTTCNCTTTATGACGNTCATAGATCAAT
CGATTTAAATATTCATATTCCTGATCATCCAAATAAAATTTTATCAATGCAACCAAAAAG
GAAAAGACAAATCATTCCTGCAAATATTGTTAAAAATGATCATTCAATGTTTAAAAATAT
TTTATCATTAAATGAATATTTAATTAAAAGAGATTCAATGGTTCAATAAAATAAAATAAT
AAAAAAAATAAATAAAAAAAAAAGAATA
Length of 3' end seq. 628
Connected seq. ID AFN192P
Connected seq. 
>AFN192P.Seq
AATTTTTAATTCAAATAAATATAAATATATAATATACAAATAATGGTTAAAAGTAGAGAT
TCTGATTCCGATGATGATTTGGATGAGGAGTTATTTCAATTAACTGAAAAGAAATCAAAT
AAAAGAATTAAATCAAATGAATCAAGTGATGAAGATTTTGAAGAAAATAAAAATAAAAAA
AAGAAAACATCAGGACCAGGTAGAAAGAAAGGTTCAACATCAATGCAACAATCAACTATA
AACTATGGTAGTAGTCGTAGGAATAGAGGTGCATCAATTGAGAATGATGATGATTTTAAT
GATGGTTATGATGAAGATTTATATAAAGATGATAATGATAGATATGAACTTTCATTATTA
CCAGAAATTGATAGAGAAAATATATTATCAGAAAGATATGAAAAGAGAAAAGAAGCAAGA
GAACTTTGGTTACAACAAAAATCAATTAGAGATAGAGAAAAGAAATCTGGTTCACAAGTT
GACAATAAATTAAAATCACAATCATCAACTAGAGGACGTAGTGAAAAAGAGGATAGACAA
AGAGAAGCATTAAAAGATTTA----------CAAGAATATAGAACCATTTGTGAGAAAAT
TGAAGAGTTGACAAAGTTGGCAATAAGCATTAAAGAAGAGAATGTTTCAAAGGTTGATCA
ATTAATTCAAACCATTAATAAAAAGAATAAATCATTAAACTTTAAATATCAATCAACTAC
TCAAACTTCAACTGAACAAGTTTCAAATGAATTTGATCCATTTGCAAGAAGAAAAACTAG
AAATTGTGCTGTAGTTGCTGCTGATACTTCAAGTATAGTCATTTCACCAACCAATTNTAC
AACTCCAACTACTACCAGTCCAATTAATGCTACTTTATCACCATCTGNTCAATTTTTAGA
GAAATCAAAAAATTCAACTACCACCACTTCCACTAATGATTCTAATAATACTCGTTCNCT
TTATGACGNTCATAGATCAATCGATTTAAATATTCATATTCCTGATCATCCAAATAAAAT
TTTATCAATGCAACCAAAAAGGAAAAGACAAATCATTCCTGCAAATATTGTTAAAAATGA
TCATTCAATGTTTAAAAATATTTTATCATTAAATGAATATTTAATTAAAAGAGATTCAAT
GGTTCAATAAAATAAAATAATAAAAAAAATAAATAAAAAAAAAAGAATA
Length of connected seq. 1179
Full length Seq ID -
Full length Seq. -
Length of full length seq. -