VFM632
Library VF
(Link to library)
Clone ID VFM632
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16603-1
Original site URL
Representative seq. ID VFM632P
(Link to Original site)
Representative DNA sequence
>VFM632 (VFM632Q) /CSM/VF/VFM6-B/VFM632Q.Seq.d/
ACTGTTGGCCTACTGGATTACAAGCATTGAAAAAAATGAACAAATCAATTTTATTATTAG
TTTTAGTAATTGTATCAATTATTGGTTCAATTGACTCAAAGAAAGTATTCAATGTTCGTA
CTGATTTAAAAAATCAATTAAAATTTAGACATTTTGATGATAGTTTAGATTATGATGCAA
TCAATTATCAATGGTTCACTCAAAGTGTTGATCATTTTAATCCAGCAAACCCAACAACTT
TCCAACAAAGATATTTAATTAATGACCAATATTGGGATGGTACAGGTCCAGTTTTTATCA
TGATTAATGGTGAAGGTCCAATGGATATTAATACTGTAACCCAACTTCAATTTGTTGTTT
GGGCTAAACAAGTTAGTGCACTTGTTGTTTCTCTTGAACATCGTTATTATGGTGCTAGTT
TTGTAACTGAAGACCTTTCACTTGAAAATTTACAATGATTAAATTCAGCACAAGCATTAG
CAGATAATGCAGTTTTTAGAAATTTTGTAGCACAACAATATAATGTACCAAAAGAATCAA
AATGGATTTCATTTGGTGGTAGTTATTCAGGAGCATTAACTTCATGGTTTAGAATTAAAT
ATCCACATTTAGTTGATGCCACCATTGCATCAAGTGCACCAGTXXXXXXXXXXTGAAAAC
ATTAACATTGCAACTCAAAAGATTCAAGCACTCCTCAGTCAAGATAACTATGGTGGTGTT
GATCAAATGTTTAACCTTTGTACACCACTTGGTAATCAAAATGATGTTGCCACTTTTATG
CAATCACTTGCAGGTAATTTCATGGGTGTAGTTCAATATAACGATGAAGAACCAGGTCAA
ATCGATATCGATTACCTTTGCAATATCATGACTAATCAATCATCAGATCCATTGACAAAC
TATATCCAAATTTGGGATCAATATGCTGATGGTGAATGTGTTGATGTTTCATATGCTTCA
ATGATCGCTCAAAATCAAAATGTTACCAATGATGAAAATGCCATTGGTGGTAGAATGTGG
TTCTATCAAACTTGTGTTGAATTTGGTTATTATCAATCAAGTGATGCTCCATCTGCAAAT
CAACCATTTGGTAATTTATTCCCATTCCAACCATATCAAATTCAACAATGTGCCGATAGT
TTTGGTATTCCAAATATGTATCCAAACGTTAATTGGACAATCACTGAATATGGTGGTATT
AATCCAGAACCATCCTCTGTTGATAATACCTTATATGTAAATGGTTCAAATGATGAATGG
CACAATCTTGCAATCTTACCAGGTAATGCAAATGCTAAAAATACTTTATACATTATTGGT
ACAAGTCATTGTGCTGATATGATGATTCCAACTTCAGTATCACCTCCAACTCTGCTCAAG
CACAACAAATTATTTTNAATTCATCCAAGC
sequence update 2001.11.22
Translated Amino Acid sequence
cwptglqalkkmnksilllvlvivsiigsidskkvfnvrtdlknqlkfrhfddsldydai
nyqwftqsvdhfnpanpttfqqrylindqywdgtgpvfimingegpmdintvtqlqfvvw
akqvsalvvslehryygasfvtedlslenlq*LNSAQALADNAVFRNFVAQQYNVPKESK
WISFGGSYSGALTSWFRIKYPHLVDATIASSAP---

---ENINIATQKIQALLSQDNYGGVDQMFNLCTPLGNQNDVATFMQSLAGNFMGVVQYND
EEPGQIDIDYLCNIMTNQSSDPLTNYIQIWDQYADGECVDVSYASMIAQNQNVTNDENAI
GGRMWFYQTCVEFGYYQSSDAPSANQPFGNLFPFQPYQIQQCADSFGIPNMYPNVNWTIT
EYGGINPEPSSVDNTLYVNGSNDEWHNLAILPGNANAKNTLYIIGTSHCADMMIPTSVSP
PTLLKHNKLFXIHPS


Translated Amino Acid sequence (All Frames)
Frame A:
tvglldykh*kk*tnqfyy*f**lyqllvqltqrkysmfvli*kin*nldilmiv*immq
siingslkvliiliqqtqqlsnkdi*lmtnigmvqvqfls*lmvkvqwilil*pnfnllf
glnklvhllfllnivimvlvl*lktfhlkiynd*iqhkh*qimqfleil*hnnimyqknq
ngfhlvvviqeh*lhglelnihi*lmpplhqvhq---

---*kh*hcnskdsstpqsr*lwwc*snv*plyttw*sk*cchfyaitcr*fhgcssi*r
*rtrsnryrlplqyhd*siirsidklypnlgsic*w*mc*cficfndrskskcyq**kch
ww*nvvlsnlc*iwllsik*csickstiw*fipiptisnstmcr*fwyskyvskr*ldnh
*iwwy*srtilc**ylickwfk**maqscnltr*ckc*kyfihywykslc*yddsnfsit
snsaqaqqiixnssk

Frame B:
llaywitsiekneqinfiisfsncinywfn*lkesiqcsy*fkksiki*tf***frl*cn
qlsmvhskc*sf*sskpnnfptkifn**pilgwyrssfyhd*w*rsngy*ycnptsiccl
g*ts*ctccfs*tsllwc*fcn*rpft*kftmikfstsisr*csf*kfcstti*ctkrik
mdfiww*lfrsinfmv*n*istfs*chhcikcts---

---ENINIATQKIQALLSQDNYGGVDQMFNLCTPLGNQNDVATFMQSLAGNFMGVVQYND
EEPGQIDIDYLCNIMTNQSSDPLTNYIQIWDQYADGECVDVSYASMIAQNQNVTNDENAI
GGRMWFYQTCVEFGYYQSSDAPSANQPFGNLFPFQPYQIQQCADSFGIPNMYPNVNWTIT
EYGGINPEPSSVDNTLYVNGSNDEWHNLAILPGNANAKNTLYIIGTSHCADMMIPTSVSP
PTLLKHNKLFXIHPS

Frame C:
cwptglqalkkmnksilllvlvivsiigsidskkvfnvrtdlknqlkfrhfddsldydai
nyqwftqsvdhfnpanpttfqqrylindqywdgtgpvfimingegpmdintvtqlqfvvw
akqvsalvvslehryygasfvtedlslenlq*LNSAQALADNAVFRNFVAQQYNVPKESK
WISFGGSYSGALTSWFRIKYPHLVDATIASSAP---

---ktltlqlkrfkhssvkitmvvlikcltfvhhlvikmmlpllcnhlqviswv*fnitm
knqvksisitfais*linhqih*qtiskfginmlmvnvlmfhmlq*slkikmlpmmkmpl
vvecgsiklvlnlviinqvmlhlqinhlviyshsnhikfnnvpivlvfqiciqtligqsl
nmvvliqnhplliipym*mvqmmngtilqsyqvmqmlkilytllvqvivli**fqlqyhl
qlcssttnyfxfiq

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFM632 (VFM632Q) /CSM/VF/VFM6-B/VFM632Q.Seq.d/ 2688 0.0
VFF423 (VFF423Q) /CSM/VF/VFF4-A/VFF423Q.Seq.d/ 2103 0.0
VHC486 (VHC486Q) /CSM/VH/VHC4-D/VHC486Q.Seq.d/ 1495 0.0
VFJ392 (VFJ392Q) /CSM/VF/VFJ3-D/VFJ392Q.Seq.d/ 1495 0.0
VFE443 (VFE443Q) /CSM/VF/VFE4-B/VFE443Q.Seq.d/ 1495 0.0
SFH366 (SFH366Q) /CSM/SF/SFH3-C/SFH366Q.Seq.d/ 1495 0.0
SFD247 (SFD247Q) /CSM/SF/SFD2-B/SFD247Q.Seq.d/ 1491 0.0
VFF646 (VFF646Q) /CSM/VF/VFF6-B/VFF646Q.Seq.d/ 1489 0.0
VFC661 (VFC661Q) /CSM/VF/VFC6-C/VFC661Q.Seq.d/ 1489 0.0
SFD421 (SFD421Q) /CSM/SF/SFD4-A/SFD421Q.Seq.d/ 1487 0.0

own update 2004.12.24
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ435216) Dictyostelium discoideum cDNA clone:ddv26o08, 3' ... 1495 0.0 1
(BJ432798) Dictyostelium discoideum cDNA clone:ddv19h23, 3' ... 1495 0.0 1
(BJ430935) Dictyostelium discoideum cDNA clone:ddv9f12, 3' e... 1495 0.0 1
(BJ400945) Dictyostelium discoideum cDNA clone:dds15d17, 3' ... 1495 0.0 1
(BJ399772) Dictyostelium discoideum cDNA clone:dds7m12, 3' e... 1491 0.0 1
(BJ430255) Dictyostelium discoideum cDNA clone:ddv6i16, 3' e... 1489 0.0 1
(BJ428552) Dictyostelium discoideum cDNA clone:ddv12k12, 3' ... 1489 0.0 1
(BJ399709) Dictyostelium discoideum cDNA clone:dds7j06, 3' e... 1487 0.0 1
(BJ374129) Dictyostelium discoideum cDNA clone:ddc6k14, 3' e... 1487 0.0 1
(BJ373935) Dictyostelium discoideum cDNA clone:ddc5p08, 3' e... 1487 0.0 1
dna update 2009. 4.22
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

BC133755_1(BC133755|pid:none) Xenopus laevis hypothetical LOC495... 158 2e-68
BC108759_1(BC108759|pid:none) Xenopus laevis hypothetical protei... 158 2e-67
BC161646_1(BC161646|pid:none) Xenopus tropicalis hypothetical pr... 149 4e-65
BT080886_1(BT080886|pid:none) Caligus clemensi clone ccle-evs-50... 145 2e-59
S44851(S44851)K12H4.7 protein - Caenorhabditis elegans 134 2e-50
(P34528) RecName: Full=Putative serine protease K12H4.7; ... 134 2e-50
AE014297_2752(AE014297|pid:none) Drosophila melanogaster chromos... 112 4e-45
AM691747_1(AM691747|pid:none) Haemonchus contortus mRNA for inte... 114 2e-42
AE014297_2751(AE014297|pid:none) Drosophila melanogaster chromos... 120 9e-42
T16490(T16490)hypothetical protein F56F10.1 - Caenorhabditis ele... 132 9e-41
protein update 2009. 6.24
PSORT

psg: 0.75 gvh: 0.51 alm: 0.45 top: 0.53 tms: 0.00 mit: 0.21 mip: 0.08
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

32.0 %: cytoplasmic
28.0 %: nuclear
20.0 %: mitochondrial
8.0 %: cytoskeletal
4.0 %: Golgi
4.0 %: vacuolar
4.0 %: endoplasmic reticulum

>> prediction for VFM632 is cyt

5' end seq. ID VFM632F
5' end seq.
>VFM632F.Seq
ACTGTTGGCCTACTGGATTACAAGCATTGAAAAAAATGAACAAATCAATTTTATTATTAG
TTTTAGTAATTGTATCAATTATTGGTTCAATTGACTCAAAGAAAGTATTCAATGTTCGTA
CTGATTTAAAAAATCAATTAAAATTTAGACATTTTGATGATAGTTTAGATTATGATGCAA
TCAATTATCAATGGTTCACTCAAAGTGTTGATCATTTTAATCCAGCAAACCCAACAACTT
TCCAACAAAGATATTTAATTAATGACCAATATTGGGATGGTACAGGTCCAGTTTTTATCA
TGATTAATGGTGAAGGTCCAATGGATATTAATACTGTAACCCAACTTCAATTTGTTGTTT
GGGCTAAACAAGTTAGTGCACTTGTTGTTTCTCTTGAACATCGTTATTATGGTGCTAGTT
TTGTAACTGAAGACCTTTCACTTGAAAATTTACAATGATTAAATTCAGCACAAGCATTAG
CAGATAATGCAGTTTTTAGAAATTTTGTAGCACAACAATATAATGTACCAAAAGAATCAA
AATGGATTTCATTTGGTGGTAGTTATTCAGGAGCATTAACTTCATGGTTTAGAATTAAAT
ATCCACATTTAGTTGATGCCACCATTGCATCAAGTGCACCAGTNNNNNNNNNN
Length of 5' end seq. 653
3' end seq. ID VFM632Z
3' end seq.
>VFM632Z.Seq
NNNNNNNNNNTGAAAACATTAACATTGCAACTCAAAAGATTCAAGCACTCCTCAGTCAAG
ATAACTATGGTGGTGTTGATCAAATGTTTAACCTTTGTACACCACTTGGTAATCAAAATG
ATGTTGCCACTTTTATGCAATCACTTGCAGGTAATTTCATGGGTGTAGTTCAATATAACG
ATGAAGAACCAGGTCAAATCGATATCGATTACCTTTGCAATATCATGACTAATCAATCAT
CAGATCCATTGACAAACTATATCCAAATTTGGGATCAATATGCTGATGGTGAATGTGTTG
ATGTTTCATATGCTTCAATGATCGCTCAAAATCAAAATGTTACCAATGATGAAAATGCCA
TTGGTGGTAGAATGTGGTTCTATCAAACTTGTGTTGAATTTGGTTATTATCAATCAAGTG
ATGCTCCATCTGCAAATCAACCATTTGGTAATTTATTCCCATTCCAACCATATCAAATTC
AACAATGTGCCGATAGTTTTGGTATTCCAAATATGTATCCAAACGTTAATTGGACAATCA
CTGAATATGGTGGTATTAATCCAGAACCATCCTCTGTTGATAATACCTTATATGTAAATG
GTTCAAATGATGAATGGCACAATCTTGCAATCTTACCAGGTAATGCAAATGCTAAAAATA
CTTTATACATTATTGGTACAAGTCATTGTGCTGATATGATGATTCCAACTTCAGTATCAC
CTCCAACTCTGCTCAAGCACAACAAATTATTTTNAATTCATCCAAGC
Length of 3' end seq. 767
Connected seq. ID VFM632P
Connected seq.
>VFM632P.Seq
ACTGTTGGCCTACTGGATTACAAGCATTGAAAAAAATGAACAAATCAATTTTATTATTAG
TTTTAGTAATTGTATCAATTATTGGTTCAATTGACTCAAAGAAAGTATTCAATGTTCGTA
CTGATTTAAAAAATCAATTAAAATTTAGACATTTTGATGATAGTTTAGATTATGATGCAA
TCAATTATCAATGGTTCACTCAAAGTGTTGATCATTTTAATCCAGCAAACCCAACAACTT
TCCAACAAAGATATTTAATTAATGACCAATATTGGGATGGTACAGGTCCAGTTTTTATCA
TGATTAATGGTGAAGGTCCAATGGATATTAATACTGTAACCCAACTTCAATTTGTTGTTT
GGGCTAAACAAGTTAGTGCACTTGTTGTTTCTCTTGAACATCGTTATTATGGTGCTAGTT
TTGTAACTGAAGACCTTTCACTTGAAAATTTACAATGATTAAATTCAGCACAAGCATTAG
CAGATAATGCAGTTTTTAGAAATTTTGTAGCACAACAATATAATGTACCAAAAGAATCAA
AATGGATTTCATTTGGTGGTAGTTATTCAGGAGCATTAACTTCATGGTTTAGAATTAAAT
ATCCACATTTAGTTGATGCCACCATTGCATCAAGTGCACCAGT----------TGAAAAC
ATTAACATTGCAACTCAAAAGATTCAAGCACTCCTCAGTCAAGATAACTATGGTGGTGTT
GATCAAATGTTTAACCTTTGTACACCACTTGGTAATCAAAATGATGTTGCCACTTTTATG
CAATCACTTGCAGGTAATTTCATGGGTGTAGTTCAATATAACGATGAAGAACCAGGTCAA
ATCGATATCGATTACCTTTGCAATATCATGACTAATCAATCATCAGATCCATTGACAAAC
TATATCCAAATTTGGGATCAATATGCTGATGGTGAATGTGTTGATGTTTCATATGCTTCA
ATGATCGCTCAAAATCAAAATGTTACCAATGATGAAAATGCCATTGGTGGTAGAATGTGG
TTCTATCAAACTTGTGTTGAATTTGGTTATTATCAATCAAGTGATGCTCCATCTGCAAAT
CAACCATTTGGTAATTTATTCCCATTCCAACCATATCAAATTCAACAATGTGCCGATAGT
TTTGGTATTCCAAATATGTATCCAAACGTTAATTGGACAATCACTGAATATGGTGGTATT
AATCCAGAACCATCCTCTGTTGATAATACCTTATATGTAAATGGTTCAAATGATGAATGG
CACAATCTTGCAATCTTACCAGGTAATGCAAATGCTAAAAATACTTTATACATTATTGGT
ACAAGTCATTGTGCTGATATGATGATTCCAACTTCAGTATCACCTCCAACTCTGCTCAAG
CACAACAAATTATTTTNAATTCATCCAAGC
Length of connected seq. 1400
Full length Seq ID -
Full length Seq. -
Length of full length seq. -