>VFM511 (VFM511Q) /CSM/VF/VFM5-A/VFM511Q.Seq.d/
XXXXXXXXXXANCCGCTCATATTCCAGCATATACTTCATTAAATTCATCATCCTCATCCA
CCATCTCAAAGAGTAATAGCAATCAAAGCCTTGCAAAGGAAACCAGTAGTAACAACCTCT
TGCAATATCAATCACCAGTTAGAGTAGCCAGCTCAACATCATCTGAGAATTTAGTCGATA
GTGCTTCCATTATGAACAACGTTGATTCTCATACCTCTGAAGAGAAAATGAAGCAAGAGG
CAAAGAGATTAGAAAGATGGGGTTTAAAGATTAACTCACCAACTGCTACCTCACCAAGCA
CTACCTCACCACCAGTCTCTAGTACCACTCCGGTTGCACCAGTGACTCCAACCGAACAAT
CTGTACCACAATCTCCATTCTCAACTGGTGCTGCCGTCTCTGTCAATCAAAGTCATAGCA
ATCTCCCAATCGCTACTACCCAACAATTCCTTGATCGTATCGTTCTCTCTGCTAAATCCG
TTAAACAAATCATTCAAAAGAAAACCTCTAATCGTGATATTGTCATCTCTATTCTCATGG
ATTTAGTAAAGGAATCTGCAAACTTTGGTATGACTCTCTCTTCAACTA

---XAHIPAYTSLNSSSSSTISKSNSNQSLAKETSSNNLLQYQSPVRVASSTSSENLVDS
ASIMNNVDSHTSEEKMKQEAKRLERWGLKINSPTATSPSTTSPPVSSTTPVAPVTPTEQS
VPQSPFSTGAAVSVNQSHSNLPIATTQQFLDRIVLSAKSVKQIIQKKTSNRDIVISILMD
LVKESANFGMTLSST

Frame A:
---XAHIPAYTSLNSSSSSTISKSNSNQSLAKETSSNNLLQYQSPVRVASSTSSENLVDS
ASIMNNVDSHTSEEKMKQEAKRLERWGLKINSPTATSPSTTSPPVSSTTPVAPVTPTEQS
VPQSPFSTGAAVSVNQSHSNLPIATTQQFLDRIVLSAKSVKQIIQKKTSNRDIVISILMD
LVKESANFGMTLSST


Frame B:
---plifqhilh*ihhphppsqrviaikalqrkpvvttscninhqle*paqhhlri*siv
lpl*ttliliplkrk*skrqrd*kdgv*rlthqllphqalphhqslvplrlhq*lqpnnl
yhnlhsqlvlpslsikviaisqsllpnnslivsfsllnplnksfkrkplivilsslfswi
**rnlqtlv*lslql


Frame C:
---rsyssiyfikfiilihhlke**qskpckgnq**qplaisits*ssqlnii*efsr*c
fhyeqr*fsyl*reneargkeirkmgfkd*ltncyltkhylttsl*yhsgctsdsnrtic
ttisilnwccrlcqsks*qspnryyptip*syrslc*ir*tnhskenl*s*ychlyshgf
skgicklwydslfn

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFM511 (VFM511Q) /CSM/VF/VFM5-A/VFM511Q.Seq.d/                       1142   0.0
CFA872 (CFA872Q) /CSM/CF/CFA8-C/CFA872Q.Seq.d/                       1142   0.0
SFG704 (SFG704Q) /CSM/SF/SFG7-A/SFG704Q.Seq.d/                       1136   0.0
AFO548 (AFO548Q) /CSM/AF/AFO5-B/AFO548Q.Seq.d/                       1136   0.0
SFC268 (SFC268Q) /CSM/SF/SFC2-C/SFC268Q.Seq.d/                       1134   0.0
CHD103 (CHD103Q) /CSM/CH/CHD1-A/CHD103Q.Seq.d/                       1120   0.0
VFL163 (VFL163Q) /CSM/VF/VFL1-C/VFL163Q.Seq.d/                       1116   0.0
SSC538 (SSC538Q) /CSM/SS/SSC5-B/SSC538Q.Seq.d/                       1092   0.0
SSC534 (SSC534Q) /CSM/SS/SSC5-B/SSC534Q.Seq.d/                       1092   0.0
CFB439 (CFB439Q) /CSM/CF/CFB4-B/CFB439Q.Seq.d/                       1086   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF222688|AF222688.1 Dictyostelium discoideum dynacortin (dct) mRNA, complete cds.  1142   0.0    1
AC122688|AC122688.5 Homo sapiens 12 BAC RP11-158L12 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    46   0.53   1
AC005722|AC005722.1 Homo sapiens chromosome 17, clone  hRPK.311_F_12, complete sequence.    38   0.75   2
AL161564|AL161564.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 64.    36   0.80   4
BB161213|BB161213.1 Mus musculus 16 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A130058L06, 3' end partial sequence.    36   1.4    2
AC026735|AC026735.4 Homo sapiens chromosome 5 clone CTD-2347K12, WORKING DRAFT SEQUENCE, 3 ordered pieces.    30   1.6    7
AC083781|AC083781.2 Homo sapiens chromosome 1 clone RP11-225N18 map 1, WORKING DRAFT SEQUENCE, 11 unordered pieces.    44   2.1    1
AC094024|AC094024.7 Rattus norvegicus clone CH230-5O11, WORKING DRAFT SEQUENCE, 1 ordered piece.    44   2.1    1
AC114441|AC114441.5 Rattus norvegicus clone CH230-116K24, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    44   2.1    1
AC019295|AC019295.3 Homo sapiens clone RP11-24O11, WORKING DRAFT SEQUENCE, 5 unordered pieces.    44   2.1    1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF222688_1(AF222688|pid:none) Dictyostelium discoideum dynacorti...   263   2e-69
A53856(A53856) aryl-acylamidase (EC 3.5.1.13) - human  &AX214548...    33   7.5
AP008232_576(AP008232|pid:none) Sodalis glossinidius str. 'morsi...    32   9.7

 psg: 0.84  gvh: 0.44  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.39  mip: 0.08
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: mitochondrial
	 40.0 %: nuclear
	 12.0 %: cytoplasmic
	  4.0 %: cytoskeletal

>> prediction for VFM511 is mit

>VFM511Z.Seq
NNNNNNNNNNANCCGCTCATATTCCAGCATATACTTCATTAAATTCATCATCCTCATCCA
CCATCTCAAAGAGTAATAGCAATCAAAGCCTTGCAAAGGAAACCAGTAGTAACAACCTCT
TGCAATATCAATCACCAGTTAGAGTAGCCAGCTCAACATCATCTGAGAATTTAGTCGATA
GTGCTTCCATTATGAACAACGTTGATTCTCATACCTCTGAAGAGAAAATGAAGCAAGAGG
CAAAGAGATTAGAAAGATGGGGTTTAAAGATTAACTCACCAACTGCTACCTCACCAAGCA
CTACCTCACCACCAGTCTCTAGTACCACTCCGGTTGCACCAGTGACTCCAACCGAACAAT
CTGTACCACAATCTCCATTCTCAACTGGTGCTGCCGTCTCTGTCAATCAAAGTCATAGCA
ATCTCCCAATCGCTACTACCCAACAATTCCTTGATCGTATCGTTCTCTCTGCTAAATCCG
TTAAACAAATCATTCAAAAGAAAACCTCTAATCGTGATATTGTCATCTCTATTCTCATGG
ATTTAGTAAAGGAATCTGCAAACTTTGGTATGACTCTCTCTTCAACTA