NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFN176
Library AF
(Link to library)
Clone ID AFN176
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID AFN176P
(Link to Original site)
Representative DNA sequence 
>AFN176 (AFN176Q) /CSM/AF/AFN1-D/AFN176Q.Seq.d/
GTTTGAGTTAAATTACAAATTCCACTTCACACTCAATACCACACAAATAGAAATTTAAAT
AAATAAAAATTTTTTATTATTTTTATTTTAATTTTTTTTTTTATTTTCAAATTTAAATTC
AACTCTGTTTCATATTAAAATTATTATTATTACCAACCATCATTAATAAATAAATAAATA
AAATTTTTTTAAAAAAAAAAXXXXXXXXXXTCACCACTTCTCAATGTGAAAGTTTAATCC
AAGCAGGTGTAGATGGTCTTANAGTTGGTATGGGTGTTGGTTCCATTTGCACCACTCAAG
AGGTTANGGCATGTGGTCGTCCTCAAGCCGCCGCCGTATTCAAATGTGCCCTCTACTNTA
GTCAATACAATGNACCAATCATTGCCGNCGGTGGTATTNGTACCATCGGTCATATCATTA
AAGGTCTCTCATTGGGCGCTTCCTCTGTAATGATGGGCAGTATGTTGGCCGGTACCGAAG
AGGCTCCAGGTGATTATTTCTACAAGGATGGTATGCGTTTAAAGAAATATCGTGGTATGG
GTTCATTGGAAGCAATGGTTAAAGGTGGTGATCAAANATACTTTAGTGAAACCGATAAAA
TTAAAGTCGCTCAAGGTGTTAGTGGTAGTGTTGTAGATAAAGGTTCCGTAAANAAATTCG
TCCCATATCTCATTCAAGGTATTAAACATGGTCTTCAACATCTTGGTTGTAATTCTGTCA
CAAATTTACGTGAAAGTGTTTATGGTGGTAAAGTTAGATTCGAAGTTAGAACCGCTGCCG
CTCAAGCTGAAGGCTCTGTACATAGTTTATTCTCATATAAAAACNTTTTATTTAAATTAA
ATT
sequence update 2009. 4. 3
Translated Amino Acid sequence 
ls*itnstshsiphk*kfk*ikifyyfyfnfffyfqi*iqlcfilkllllptiink*INK
IFLKKK---

---TTSQCESLIQAGVDGLXVGMGVGSICTTQEVXACGRPQAAAVFKCALYXSQYNXPII
AXGGIXTIGHIIKGLSLGASSVMMGSMLAGTEEAPGDYFYKDGMRLKKYRGMGSLEAMVK
GGDQXYFSETDKIKVAQGVSGSVVDKGSVXKFVPYLIQGIKHGLQHLGCNSVTNLRESVY
GGKVRFEVRTAAAQAEGSVHSLFSYKNXLFKLN
Translated Amino Acid sequence (All Frames) 
Frame A:
v*vklqiplhtqyhtnrnlnk*kffiifilifffifkfkfnsvsy*nyyyyqpslink*i
kff*kk---

---spllnvkv*skqv*mvlxlvwvlvpfaplkrlxhvvvlkpppysnvpstxvntmxqs
lpxvvxvpsvislkvshwalpl**wavcwpvpkrlqviistrmvcv*rnivvwvhwkqwl
kvvikxtlvkpiklkslkvlvvvl*ikvp*xnsshisfkvlnmvfnilvvilsqiyvkvf
mvvkldskleplplklkalyivyshiktfyln*i

Frame B:
felnykfhftlnttqiei*inknfllflf*ffflfsnlnstlfhikiiiitnhh**ink*
nffkkk---

---hhfsm*kfnpsrcrwsxswygcwfhlhhsrgxgmwssssrrriqmcpll*siqxtnh
crrwyxyhrsyh*rsligrflcndgqyvgryrrgsr*lflqgwyafkeiswygfigsng*
rw*sxil**nr*n*srsrc*w*ccr*rfrkxirpishsry*twsstswl*fchkft*kcl
ww*s*irs*nrcrss*rlct*fili*kxfi*ik

Frame C:
ls*itnstshsiphk*kfk*ikifyyfyfnfffyfqi*iqlcfilkllllptiink*INK
IFLKKK---

---TTSQCESLIQAGVDGLXVGMGVGSICTTQEVXACGRPQAAAVFKCALYXSQYNXPII
AXGGIXTIGHIIKGLSLGASSVMMGSMLAGTEEAPGDYFYKDGMRLKKYRGMGSLEAMVK
GGDQXYFSETDKIKVAQGVSGSVVDKGSVXKFVPYLIQGIKHGLQHLGCNSVTNLRESVY
GGKVRFEVRTAAAQAEGSVHSLFSYKNXLFKLN
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFN176 (AFN176Q) /CSM/AF/AFN1-D/AFN176Q.Seq.d/                       1201   0.0
SFE109 (SFE109Q) /CSM/SF/SFE1-A/SFE109Q.Seq.d/                       1170   0.0
AFD295 (AFD295Q) /CSM/AF/AFD2-D/AFD295Q.Seq.d/                       1146   0.0
AFD809 (AFD809Q) /CSM/AF/AFD8-A/AFD809Q.Seq.d/                       1108   0.0
SLB515 (SLB515Q) /CSM/SL/SLB5-A/SLB515Q.Seq.d/                       1092   0.0
SFF770 (SFF770Q) /CSM/SF/SFF7-C/SFF770Q.Seq.d/                       1074   0.0
AFO154 (AFO154Q) /CSM/AF/AFO1-C/AFO154Q.Seq.d/                       1074   0.0
CHD170 (CHD170Q) /CSM/CH/CHD1-C/CHD170Q.Seq.d/                       1072   0.0
AFM653 (AFM653Q) /CSM/AF/AFM6-C/AFM653Q.Seq.d/                       1072   0.0
AFM510 (AFM510Q) /CSM/AF/AFM5-A/AFM510Q.Seq.d/                       1037   0.0
own update 2009. 4. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ347675) Dictyostelium discoideum cDNA clone:dda27g19, 3' ...  1201   0.0    1
(BJ400150) Dictyostelium discoideum cDNA clone:dds9a03, 3' e...  1170   0.0    1
(BJ341724) Dictyostelium discoideum cDNA clone:dda7m24, 3' e...  1146   0.0    1
(BJ341742) Dictyostelium discoideum cDNA clone:dda8b04, 3' e...  1078   0.0    3
(AU033846) Dictyostelium discoideum slug cDNA, clone SLB515.      995   0.0    3
(BJ398494) Dictyostelium discoideum cDNA clone:dds12l17, 3' ...  1074   0.0    1
(BJ345962) Dictyostelium discoideum cDNA clone:dda29k13, 3' ...  1074   0.0    1
(BJ376464) Dictyostelium discoideum cDNA clone:ddc28k17, 3' ...  1072   0.0    1
(BJ347268) Dictyostelium discoideum cDNA clone:dda26i14, 3' ...  1072   0.0    1
(BJ347069) Dictyostelium discoideum cDNA clone:dda26c03, 3' ...  1023   0.0    2
dna update 2009. 4.16
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR382331_3(CR382331|pid:none) Zebrafish DNA sequence from clone ...   189   1e-46
AJ851396_1(AJ851396|pid:none) Gallus gallus mRNA for hypothetica...   188   2e-46
(P12268) RecName: Full=Inosine-5'-monophosphate dehydrogenase 2;...   186   8e-46
(P24547) RecName: Full=Inosine-5'-monophosphate dehydrogenase 2;...   186   8e-46
AK143505_1(AK143505|pid:none) Mus musculus 8 cells embryo 8 cell...   186   8e-46
JT0565(JT0565;A34375;S42724) IMP dehydrogenase (EC 1.1.1.205) - ...   186   1e-45
BC080955_1(BC080955|pid:none) Xenopus tropicalis IMP (inosine mo...   184   3e-45
BC044122_1(BC044122|pid:none) Xenopus laevis inosine 5'-phosphat...   184   3e-45
BT058882_1(BT058882|pid:none) Salmo salar clone ssal-rgf-510-256...   183   7e-45
AK054640_1(AK054640|pid:none) Homo sapiens cDNA FLJ30078 fis, cl...   182   1e-44
protein update 2009. 4. 6
PSORT 

 psg: 0.00  gvh: 0.00  alm: 0.00  top: 0.00  tms: 0.00  mit: 0.00  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	100.0 %: 

>> prediction for AFN176 is

5' end seq. ID AFN176F
5' end seq. 
>AFN176F.Seq
GTTTGAGTTAAATTACAAATTCCACTTCACACTCAATACCACACAAATAGAAATTTAAAT
AAATAAAAATTTTTTATTATTTTTATTTTAATTTTTTTTTTTATTTTCAAATTTAAATTC
AACTCTGTTTCATATTAAAATTATTATTATTACCAACCATCATTAATAAATAAATAAATA
AAATTTTTTTAAAAAAAAAAXXXXXXXXXX
Length of 5' end seq. 210
3' end seq. ID AFN176Z
3' end seq. 
>AFN176Z.Seq
XXXXXXXXXXTCACCACTTCTCAATGTGAAAGTTTAATCCAAGCAGGTGTAGATGGTCTT
ANAGTTGGTATGGGTGTTGGTTCCATTTGCACCACTCAAGAGGTTANGGCATGTGGTCGT
CCTCAAGCCGCCGCCGTATTCAAATGTGCCCTCTACTNTAGTCAATACAATGNACCAATC
ATTGCCGNCGGTGGTATTNGTACCATCGGTCATATCATTAAAGGTCTCTCATTGGGCGCT
TCCTCTGTAATGATGGGCAGTATGTTGGCCGGTACCGAAGAGGCTCCAGGTGATTATTTC
TACAAGGATGGTATGCGTTTAAAGAAATATCGTGGTATGGGTTCATTGGAAGCAATGGTT
AAAGGTGGTGATCAAANATACTTTAGTGAAACCGATAAAATTAAAGTCGCTCAAGGTGTT
AGTGGTAGTGTTGTAGATAAAGGTTCCGTAAANAAATTCGTCCCATATCTCATTCAAGGT
ATTAAACATGGTCTTCAACATCTTGGTTGTAATTCTGTCACAAATTTACGTGAAAGTGTT
TATGGTGGTAAAGTTAGATTCGAAGTTAGAACCGCTGCCGCTCAAGCTGAAGGCTCTGTA
CATAGTTTATTCTCATATAAAAACNTTTTATTTAAATTAAATT
Length of 3' end seq. 643
Connected seq. ID AFN176P
Connected seq. 
>AFN176P.Seq
GTTTGAGTTAAATTACAAATTCCACTTCACACTCAATACCACACAAATAGAAATTTAAAT
AAATAAAAATTTTTTATTATTTTTATTTTAATTTTTTTTTTTATTTTCAAATTTAAATTC
AACTCTGTTTCATATTAAAATTATTATTATTACCAACCATCATTAATAAATAAATAAATA
AAATTTTTTTAAAAAAAAAA----------TCACCACTTCTCAATGTGAAAGTTTAATCC
AAGCAGGTGTAGATGGTCTTANAGTTGGTATGGGTGTTGGTTCCATTTGCACCACTCAAG
AGGTTANGGCATGTGGTCGTCCTCAAGCCGCCGCCGTATTCAAATGTGCCCTCTACTNTA
GTCAATACAATGNACCAATCATTGCCGNCGGTGGTATTNGTACCATCGGTCATATCATTA
AAGGTCTCTCATTGGGCGCTTCCTCTGTAATGATGGGCAGTATGTTGGCCGGTACCGAAG
AGGCTCCAGGTGATTATTTCTACAAGGATGGTATGCGTTTAAAGAAATATCGTGGTATGG
GTTCATTGGAAGCAATGGTTAAAGGTGGTGATCAAANATACTTTAGTGAAACCGATAAAA
TTAAAGTCGCTCAAGGTGTTAGTGGTAGTGTTGTAGATAAAGGTTCCGTAAANAAATTCG
TCCCATATCTCATTCAAGGTATTAAACATGGTCTTCAACATCTTGGTTGTAATTCTGTCA
CAAATTTACGTGAAAGTGTTTATGGTGGTAAAGTTAGATTCGAAGTTAGAACCGCTGCCG
CTCAAGCTGAAGGCTCTGTACATAGTTTATTCTCATATAAAAACNTTTTATTTAAATTAA
ATT
Length of connected seq. 833
Full length Seq ID -
Full length Seq. -
Length of full length seq. -